JCM Catalogue

Sphingobium suberifaciens (van Bruggen et al. 1990) Chen et al. 2013
Taxonomy in NCBI database: Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae.
8521 <-- ATCC 49355 <-- A. H. C. van Bruggen CR-CA1 <-- R. Michelmore <-- C. Waters.
Accessioned in 1992.
=ATCC 49355 =CIP 105429 =DSM 7465 =ICMP 12535 =IFO 15211 =LMG 9830 =LMG 17323 =LMG 15591 =LMG 15574 =LMG 11026 =NBRC 15211 =NCPPB 3629.
Sphingobium suberifaciens.
Sphingomonas suberifaciens.
Rhizomonas suberifaciens.
Type strain [3072,7041,11652].
Medium: 222;  Temperature: 26°C; Rehydration fluid: 663.   more information +  Full / Short version of the cataloguepage top
Source: Lettuce roots, CA, USA [3095].
Biochemistry/Physiology: [3072,3095,9397,11652].
Fatty acid: n-C18:1, i-C16:0, n-C16:1, (2OH-C14:0) [3072,3095,9397].
Quinone: Q-10 [3072].
G+C (mol%): 58.9±0.3 (Bd) [3072].
DNA-DNA relatedness: [3072,11652].
Phylogeny: 16S rRNA gene (AB680813, D13737, KF437561) [3538,11652].
Taxonomy: [4873,9397,11652].
Genome sequence: JACHOV000000000.
More information: Causes corky root of lettuce [3095].
NCBI Assembly ID: GCA_014200045 (GenBank), GCF_014200045 (RefSeq).
BacDive ID: 14222.
NCBI Taxonomy ID: 13656.
 Related information on delivery / use of the strain
Biosafety level 1 -
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) Controlled
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
8522 <-- ATCC 49356 <-- A. H. C. van Bruggen CR-FL1.
Accessioned in 1992.
=ATCC 49356 =LMG 11117 =NCPPB 3628.
Sphingobium suberifaciens.
Sphingomonas suberifaciens.
Rhizomonas suberifaciens.
Medium: 222;  Temperature: 26°C; Rehydration fluid: 663.   more information +
Source: Soil with lettuce seedlings, FL, USA [3095].
Biochemistry/Physiology: [3072,3095].
Fatty acid: n-C18:1, i-C16:0, n-C16:1, (2OH-C14:0) [3072,3095].
Quinone: Q-10 [3072].
G+C (mol%): 58.9±0.3 (Bd) [3072].
DNA-DNA relatedness: [3072].
Phylogeny: 16S rRNA gene (LC379082).
Taxonomy: [3072].
More information: Causes corky root of lettuce [3095].
BacDive ID: 165803.
 Related information on delivery / use of the strain
Biosafety level 1 -
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) Controlled
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
8523 <-- ATCC 49381 <-- A. H. C. van Bruggen CR-WI3.
Accessioned in 1992.
=ATCC 49381 =KCTC 2842 =LMG 9837 =NCPPB 3630.
Sphingobium suberifaciens.
Sphingomonas suberifaciens.
Rhizomonas suberifaciens.
Medium: 222;  Temperature: 26°C; Rehydration fluid: 663.   more information +
Source: Soil with lettuce seedlings, WI, USA [3095].
Biochemistry/Physiology: [3072,3095,11652].
Fatty acid: n-C18:1, i-C16:0, n-C16:1, (2OH-C14:0) [3072,3095,11652].
Quinone: Q-10 [3072].
G+C (mol%): 58.9±0.3 (Bd) [3072].
Phylogeny: 16S rRNA gene (KF437550, LC379083) [11652].
Taxonomy: [3072,11652].
More information: Causes corky root of lettuce [3095].
BacDive ID: 165804.
 Related information on delivery / use of the strain
Biosafety level 1 -
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) Controlled
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
8524 <-- ATCC 49382 <-- A. H. C. van Bruggen CR-NY11.
Accessioned in 1992.
=ATCC 49382 =IFO 15212 =KCTC 2842 =LMG 9834 =NBRC 15212 =NCPPB 3631.
Sphingobium suberifaciens.
Sphingomonas suberifaciens.
Rhizomonas suberifaciens.
Medium: 222;  Temperature: 26°C; Rehydration fluid: 663.   more information +
Source: Soil with lettuce seedlings, New York, USA [3095].
Biochemistry/Physiology: [3072,3095,11652].
Fatty acid: n-C18:1, i-C16:0, n-C16:1, (2OH-C14:0) [3072,3095].
Quinone: Q-10 [3072].
G+C (mol%): 58.9±0.3 (Bd) [3072].
DNA-DNA relatedness: [3072].
Phylogeny: 16S rRNA gene (KF437554, LC379084) [11652].
Taxonomy: [3072,11652].
More information: Causes corky root of lettuce [3095].
BacDive ID: 165805.
 Related information on delivery / use of the strain
Biosafety level 1 -
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) Controlled
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
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