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JCM BLAST Search


You can search for JCM strains (or equivalent strains) with genome sequences homologous to your query sequences.


The following BLAST programs are available.

ProgramQueryDatabase
blastnNucleotideNucleotide
blastpProteinProtein
blastxProteinProtein
tblastnProteinNucleotide
tblastxNucleotideNucleotide

How to use

1. Input query sequences (FASTA format)

Input your query sequences in the box. Or, upload a text file with your query sequences.
Note: Up to 5 queries. Mixed bases other than N (e.g., R and Y) are not supported; if mixed bases other than N are included in the query sequence, replace them all with N before starting the search.


Examples:
>Query nucleotide sequence
atgcgaagtgaacagatttctggctcgtcactcaatccgtcttgtcgtttcagttctgcgtactctcctgtgaccaggcagcgaaaagacatgagtcgatga
>Query protein sequence
MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE

2. Select a reference database

Database Target region Source*
Genome sequence (GenBank; nucleotide) Whole genome sequence GenBank
Coding sequence (GenBank; nucleotide) Protein-coding regions GenBank
Coding sequence (RefSeq; nucleotide) Protein-coding regions RefSeq
Coding sequence (GenBank; protein) Protein-coding regions GenBank
Coding sequence (RefSeq; protein) Protein-coding regions RefSeq

*Prokaryotic genomes only. What is RefSeq/GenBank?

Last database update: Aug 20th, 2024


3. (Optional) Adjust advanced parameters


4. Click “send query” button

Please not close the window or press the back button until the results are displayed.
On the result page, click the JCM number, and jump to its online catalogue page.

Note: The results are dependent on the reference databases, and thus the presence/absence of the query sequences in the genomes of the JCM strains is not guaranteed.


If any problems, please let us know using this form.



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