|
|
|
Genome assembly: |
ALLPATHS-LG (ver. 51828) |
|
|
Genome assembly ver. 001 |
Estimated genome size |
|
53,093,854 |
Sequence coverage |
|
187 |
# of contigs |
|
135 |
Total length (contigs) |
|
48,183,370 |
N50 (contigs) |
|
653,539 |
# of scaffolds |
|
13 |
Total scaffold length (with gaps) |
|
48,230,023 |
% gaps |
|
0.1 |
N50 (scaffold) |
|
6,441,926 |
GC% |
|
51.6 |
|
|
Gene prediction: |
|
MAKER annotation pipeline (release 2.31.8) |
|
|
Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21) |
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|
Reference used: Daldinia eschscholzii |
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|
tRNAscan-SE (version 1.23) |
|
Infernal cmscan (version 1.1.1) |
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|
Database used: Rfam (Release 12.0) |
Functional annotaion: |
|
Sma3S: 2013-09-01 |
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|
Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11) |
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|
Gene prediction & funcational annotation ver. 001 |
# of predicted gene models |
|
14,987 |
# of predicted transcript models |
|
14,987 |
Average transcript length (bp) |
|
1,530 |
Average coding length (bp) |
|
1,379 |
Average protein length (aa) |
|
459 |
Average number of exons per gene model |
|
2.7 |
Average exon size (bp) |
|
513 |
Average intron size (bp) |
|
87 |
# of non-coding RNA |
|
398 |
# of functionally annotated genes trembl |
|
13,232 |
# of functionally annotated genes sprot |
|
3,202 |
CEGMA complete (%) |
|
96.37 |
CEGMA partial (%) |
|
97.58 |
|