Strain data

Search for keyword=[genome sequence].
Lactobacillus delbrueckii subsp. bulgaricus
JCM number: 1002 <-- T. Mitsuoka S1-3 <-- ISL <-- P. A. Hansen Lb 14 <-- S. Orla-Jensen 14 ("Thermobacterium bulgaricum").
Source: Bulgarian yogurt [496].
Biochemistry/Physiology: [107,1883].
Cell wall: [010].
Serology: Group E [014].
G+C (mol%): 50.3 [015].
DNA-DNA relatedness: [583,1883].
Phylogeny: 16S rRNA gene (AB007908).
Genome sequence: CR954253.
Quality control by DNA sequences: 16S rRNA gene (AB289080).
Publication(s) using this strain [A04010, A04059, A04168, A04172, A05049, A06222, A07006, A07011, A08194, A08195, A08221, A09214, A10062, B10126, A10239, A10266, A11003, A12061, A12347]
Fee category: Domestic, A or C; Overseas, A or C.
Lactobacillus sp.
JCM number: 1102 <-- T. Mitsuoka S8-40 <-- ATCC 27305 <-- H. Nonomura P-2 <-- E. Peynaud.
Source: Wine.
Genome sequence: ACGG00000000.
More information: 16S rRNA gene partial sequence of this strain has a high similarity (100 %) with L. hilgardii.
Quality control by DNA sequences: 16S rRNA gene (AB289051).
Fee category: Domestic, A or C; Overseas, A or C.
Lactobacillus reuteri
JCM number: 1112 <-- DSM 20016 <-- G. Reuter F275.
Source: Intestine of adult [022].
G+C (mol%): 41 [587], 39.7 [2433].
DNA-DNA relatedness: [373].
Phylogeny: 16S rRNA gene (L23507), [2983].
DNA typing: Amplified rRNA gene restriction analysis [4956].
Other taxonomic data: Restriction endonuclease analysis of chromosomal DNA [3527].
Genome sequence: AP007281 [8302].
Quality control by DNA sequences: 16S rRNA gene (AB289272).
Publication(s) using this strain [A04059, A04172, A06221, A07011, A08198, A08237, A08278, A09007, A09186, A09190, A09198, A10077, A10250, A11228, A11232, A11282, A12061, A12104]
Fee category: Domestic, A or C; Overseas, A or C.
Lactobacillus helveticus
JCM number: 1120 <-- ATCC 15009 <-- P. A. Hansen Lh12 <-- S. Orla-Jensen 12 ("Thermobacterium helveticum").
Source: Emmental (Swiss) cheese.
Cell wall: [010].
Serology: Group A [014].
G+C (mol%): 39.3 (Tm) [013].
Phylogeny: 16S rRNA gene (X61141) [2983].
DNA typing: AFLP [4724], RAPD-PCR [4724], ribotype [4925].
Other taxonomic data: SDS-PAGE [4724].
Genome sequence: ACLM00000000.
Quality control by DNA sequences: 16S rRNA gene (AB289155).
Publication(s) using this strain [A04059, A04075, A05009, A06222, A07011, A11280, A12004, A12061]
Fee category: Domestic, A or C; Overseas, A or C.
Lactobacillus gasseri
JCM number: 1131 <-- DSM 20243 <-- F. Gasser AM63 (Lactobacillus acidophilus).
Source: Human intestine.
Cell wall: [585].
G+C (mol%): 34.0 [106].
DNA-DNA relatedness: [584,585].
Phylogeny: 16S rRNA (M58820, X61137) [2983], 16S rRNA gene (AF519171).
DNA typing: Amplified rRNA gene restriction analysis [4956], AFLP [4724], RAPD-PCR [4724], ribotype [4925].
Other taxonomic data: SDS-PAGE [4724].
Genome sequence: CP000413.
More information: Isoflavonoid metabolism [6223]; Adherence to laminin [6388].
Quality control by DNA sequences: 16S rRNA gene (AB289134).
Publication(s) using this strain [A04034, A04041, A04059, A04075, A04081, A04168, A04170, A04172, A05039, A05049, A05053, A05059, A05197, A06195, A06221, A06222, A06228, A06249, A07006, A07011, A07022, A07179, A08194, A08270, A08278, A08291, A09013, A09019, A09189, A09273, A10092, A10266, A11280, A11309, A12061]
Fee category: Domestic, A or C; Overseas, A or C.
Lactobacillus plantarum subsp. plantarum
JCM number: 1149 <-- ATCC 14917 <-- P. A. Hansen Lp 39 <-- Roy. Techn. Coll., Copenhagen <-- S. Orla-Jensen No. 39 ("Streptobacterium plantarum").
Source: Pickled cabbage.
Cell wall: [587].
Serology: Group D [014].
G+C (mol%): 45.0 (Tm) [013], 44.0 (Tm) [2830].
DNA-DNA relatedness: [012,2830].
Phylogeny: 5S rRNA [2494], 16S rRNA gene (D79210, X52653) [2983].
Taxonomy: [2494].
Genome sequence: ACGZ00000000.
Quality control by DNA sequences: 16S rRNA gene (AB289253).
Publication(s) using this strain [A04059, A04075, A04150, A04154, A04172, A06010, A06221, A06222, A07011, A07242, A08246, A08258, A08260, A08271, A09025, A09186, A09198, A09228, A09237, A10063, A10230, A10249, A11065, A11238, A11255, A12048, A12070, A12090, A12306]
Fee category: Domestic, A or C; Overseas, A or C.
Lactobacillus hilgardii
JCM number: 1155 <-- ATCC 8290 <-- R. H. Vaughn 9.
Source: Wine.
Cell wall: [587].
G+C (mol%): 40.3 [220], 40.0 [2830].
Phylogeny: 16S rRNA (M58821) [2983], 16S rRNA gene (AB262962, AB429370) [7663].
Genome sequence: ACGP00000000.
Quality control by DNA sequences: 16S rRNA gene (AB289158).
Publication(s) using this strain [A07223, A08260]
Fee category: Domestic, A or C; Overseas, A or C.
Lactobacillus brevis
JCM number: 1170 <-- T. Mitsuoka S8-64 <-- ATCC 367 <-- E. B. Fred ("Lactobacillus pentoaceticus").
Source: Silage.
DNA typing: Amplified rRNA gene restriction analysis [4956].
Genome sequence: CP000416.
More information: Tyrosine decarboxylase activity [4648].
Quality control by DNA sequences: 16S rRNA gene (AB289049).
Assay: cytosine and uracil [041].
Publication(s) using this strain [A04075, A07006]
Fee category: Domestic, A or C; Overseas, A or C.
Lactobacillus fermentum
JCM number: 1173 <-- ATCC 14931 <-- P. A. Hansen Bl 28 <-- Roy. Techn. Coll., Copenhagen <-- S. Orla-Jensen 28 ("Betabacterium longum").
Source: Fermented beets.
Cell wall: [251].
Serology: Group F [014].
G+C (mol%): 53.4 (Tm) [013], 50.0 (Tm) [2433].
Phylogeny: 16S rRNA (M58819), 16S rRNA gene (JN175331, X61142) [2983].
DNA typing: Amplified rRNA gene restriction analysis [4956].
Genome sequence: ACGI00000000.
More information: L-Serine dehydrotase [2907].
Quality control by DNA sequences: 16S rRNA gene (AB289105).
Publication(s) using this strain [A04059, A04065, A04154, A04167, A05009, A06038, A06222, A07011, A07242, A08221, A08260, A09019, A09186, A12004]
Fee category: Domestic, A or C; Overseas, A or C.
Bifidobacterium breve
JCM number: 1192 <-- ATCC 15700 <-- G. Reuter S1 (Variant a).
Source: Intestine of infant [110].
Biochemistry/Physiology: [3126,4424].
Cell wall: Lys-Gly [010,2925,3126].
Enzyme electrophoretic profile: [1865,3126,4425].
G+C (mol%): 58.4 (Tm) [181].
DNA-DNA relatedness: [023,3126].
Phylogeny: 16S rRNA (M58731) [1273,3126], 16S rRNA gene (AB006658, GU361815).
DNA typing: RELP pattern [4423], rRNA gene restriction pattern [4597].
Taxonomy: [3126].
Genome sequence: ACCG00000000.
More information: Species-specific primer [4521].
Quality control by DNA sequences: 16S rRNA gene (AB507084).
Publication(s) using this strain [A04071, A04075, A04079, A04152, A04184, A04196, A05048, A05174, A06015, A06016, A06033, A06196, A06239, A07023, A08019, A08190, A08201, A08221, A09019, A09026, A09198, A09275, A10085, A10101, A10251, A10294, A11008, A11050, A11235, A11236, A11237, A11252, A12039, A12287, A12293]
Fee category: Domestic, A or C; Overseas, A or C.
Bifidobacterium pseudocatenulatum
JCM number: 1200 <-- ATCC 27919 <-- V. Scardovi B1279.
Source: Feces of infant [1297,3126].
Biochemistry/Physiology: [3093,3126,4424].
Cell wall: Lys-Ala-Ala-Ser [2925,3126].
Enzyme electrophoretic profile: [3126,4425].
G+C (mol%): 57.5 (Tm) [082].
DNA-DNA relatedness: [082,3126].
Phylogeny: 16S rRNA (M84785), 16S rRNA gene (D86187, GU361827).
Other taxonomic data: Protein profile [1865].
Taxonomy: [3126].
Genome sequence: ABXX00000000.
Quality control by DNA sequences: 16S rRNA gene (AB507133).
Publication(s) using this strain [A04009, A04018, A04020, A04079, A04152, A04190, A05011, A05048, A06239, A07171, A07273, A08278, A09019, A09026, A09198, A10101, A10294, A11008, A11050, B11156, A11252, A12011, A12311, A12312]
Fee category: Domestic, A or C; Overseas, A or C.
Lactobacillus salivarius
JCM number: 1231 <-- ATCC 11741 <-- M. Rogosa HO66.
Source: Human saliva [600].
Cell wall: [010].
G+C (mol%): 34.7 [015].
Phylogeny: 16S rRNA gene (DQ901733) [6487].
DNA typing: Amplified rRNA gene restriction analysis [4956].
Genome sequence: ACGT00000000.
Quality control by DNA sequences: 16S rRNA gene (AB289296).
Publication(s) using this strain [A04059, A05166, A06010, A06038, A07011, B07120, A08280, A09019, A09186]
Fee category: Domestic, A or C; Overseas, A or C.
Serratia odorifera
JCM number: 1243 <-- Y. Kosako 331 <-- R. Sakazaki 331 <-- P. A. D. Grimont 1073.
Source: Sputum [001].
Biochemistry/Physiology: [001].
DNA-DNA relatedness: [001].
Phylogeny: 16S rRNA gene (AF286870, AJ233432).
Genome sequence: ADBY00000000.
Fee category: Domestic, A or C; Overseas, A or C.
Chromobacterium violaceum
JCM number: 1249 <-- R. Sakazaki <-- ATCC 12472 <-- P. H. A. Sneath strain MK <-- J. P. F. Whelan.
Source: Freshwater, Malaya.
Phylogeny: 16S rRNA gene (AB594767).
Genome sequence: AE016825.
Quality control by DNA sequences: 16S rRNA gene (AB594767).
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 07721.
Publication(s) using this strain [A04168, A08299, A11254]
Fee category: Domestic, A or C; Overseas, A or C.
Bifidobacterium adolescentis
JCM number: 1275 <-- ATCC 15703 <-- G. Reuter E194a (Variant a).
Source: Intestine of adult [110].
Biochemistry/Physiology: [3093,3126,4424].
Cell wall: Lys(Orn)-Asp [010,3126].
Enzyme electrophoretic profile: [3126,4425].
G+C (mol%): 58.9 (Tm) [181].
DNA-DNA relatedness: [023,3126].
Phylogeny: 16S rRNA (M58729), 16S rRNA gene (AB437354), hsp60 (AF210319) [5374].
DNA typing: RELP [4423], rRNA gene restriction pattern [4597], genome-wide tiling array [9039].
Other taxonomic data: Protein profile [1865].
Genome sequence: AP009256.
More information: Species-specific primer [4521].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 07423.
Publication(s) using this strain [A04015, A04018, A04079, A04152, A04168, A04196, A05011, A05036, A05048, A06033, A07171, B07183, A08019, A08201, A08244, A08278, A09019, A09026, A09198, A09201, A10090, A10101, A10294, A11008, A11225, A11236, A11237, A11252, A11297, A12287]
Fee category: Domestic, A or C; Overseas, A or C.
Sphingobacterium spiritivorum
JCM number: 1277 <-- NCTC 11386 <-- CDC E7288 <-- Kansas Dept. Hlth. Environ., USA <-- Univ. Kansas Med. Center, USA.
Source: Intrauterine specimens, KS, USA [191].
Biochemistry/Physiology: [191].
Numerical taxonomy: [506].
Fatty acid: [506].
G+C (mol%): 41.0 (Tm) [191].
DNA-DNA relatedness: [506].
Phylogeny: 16S rRNA (D14026), 16S rRNA gene (EF090267, M58778).
Genome sequence: ACHA00000000.
Publication(s) using this strain [A11246, A12256]
Fee category: Domestic, A or C; Overseas, A or C.
Clostridium ramosum
JCM number: 1298 <-- ATCC 25582 <-- W. E. C. Moore VPI 0427 <-- A. R. Prévot 113-1 ("Ramibacterium ramosum").
G+C (mol%): 26.0 (Tm) [1375].
DNA-DNA relatedness: [1377].
Phylogeny: 16S rRNA (M23731) [4034], 16S rRNA gene (AB595128, X73440) [3374].
Other taxonomic data: Protein profile [2652].
Genome sequence: ABFX00000000.
Quality control by DNA sequences: 16S rRNA gene (AB595128).
Publication(s) using this strain [A04184, A05187, A06045, A07179, A08278, A09019, A10272, A12041]
Fee category: Domestic, A or C; Overseas, A or C.
Corynebacterium ammoniagenes
JCM number: 1305 <-- ATCC 6871 <-- NCTC 2398 <-- J. Cooke.
Source: Stool of infant [487].
Biochemistry/Physiology: [255,8039].
Cell wall: meso-A2pm direct [375]; N-acetyl Mur [276]; arabinogalactan [2883].
Fatty acid: [261,426,643,8039].
Quinone: MK-9(H2) [263,376].
Polar lipid: [264].
G+C (mol%): 54.1 (Tm) [125], 53.2 (Tm) [5453].
Phylogeny: 16S rRNA gene (X82056, X84440) [3956,3961], rpoB (FJ648511) [8039].
Other taxonomic data: Mycolic acid [250,392,425]; Fatty acid synthase [1328]; Ribosomal protein [3945].
Taxonomy: [256,2529].
Genome sequence: ADNS00000000.
Publication(s) using this strain [A08203, A11026]
Fee category: Domestic, A or C; Overseas, A or C.
Corynebacterium glutamicum
JCM number: 1308 <-- K. Suzuki CNF 014 <-- AJ 1510 <-- ATCC 14067 <-- Ajinomoto Co., Inc. 2247.
Biochemistry/Physiology: [255,421].
Cell wall: meso-A2pm direct; arabinogalactan [251,375].
Fatty acid: [426,428,643].
Quinone: MK-9(H2) [376].
G+C (mol%): 56.8 (Chemical) [423], 54.1 (Tm) [125].
DNA-DNA relatedness: [259].
DNA typing: hom gene RFLP [2940], rRNA gene RFLP [3055].
Other taxonomic data: Mycolic acid [392,425].
Taxonomy: [250,256,422,424,3055].
Genome sequence: AGQQ00000000 [9048].
More information: Transducing phages [2255].
Production: L-glutamic acid [427].
Fee category: Domestic, A or C; Overseas, A or C.
Corynebacterium glutamicum
JCM number: 1318 <-- ATCC 13032 <-- Kyowa Hakko Kogyo Co., Ltd. 534.
Source: Sewage.
Morphology: [430,431,433,434].
Biochemistry/Physiology: [255,421].
Cell wall: meso-A2pm [253]; N-acetyl Mur [276].
Fatty acid: [426,643].
Quinone: MK-9(H2) [263,391].
G+C (mol%): 56.8 (Chemical) [423], 53.4 (Tm) [125], 54.6 (Tm) [3055], 54.3 (Tm) [5453], 55 (HPLC) [5439].
DNA-DNA relatedness: [259].
Phylogeny: 16S rRNA gene (X80629, X82061, X84257, Z46753) [3951,3956,3961], 5S rRNA (M16175) [2499].
DNA typing: Restriction pattern of hom gene [2940], restriction pattern of rRNA gene [3055].
Other taxonomic data: Mycolic acid [392,425]; Ribosomal protein [3945,3947].
Taxonomy: [250,256,422,424].
Genome sequence: BA000036, BX927147 [6251].
More information: Fatty acid synthetase [1328].
Production: L-glutamic acid [429].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 07494.
Publication(s) using this strain [A04007, A08203]
Fee category: Domestic, A or C; Overseas, A or C.
Cellulomonas fimi
JCM number: 1341 <-- K. Suzuki CNF 025 <-- AJ 1571 <-- ATCC 484 <-- N. R. Smith NRS 133.
Source: Soil.
Biochemistry/Physiology: [255,266].
Cell wall: Type A4β (L-Orn-D-Glu) [227,251].
Fatty acid: [643].
Quinone: MK-9(H4) [263].
Polar lipid: [264].
Serology: [268].
G+C (mol%): 71.7 (Tm) [125].
DNA-DNA relatedness: [259,266].
Phylogeny: 16S rRNA gene (X79460, X83803) [3946].
Taxonomy: [250,256,266,4412].
Genome sequence: CP002666.
More information: Glucose breakdown pathway [267]; Polar multitrichous flagella [1068]; Cellulase gene-cloning [1018,1019]; β-galactosidase [100].
Publication(s) using this strain [A04007]
Fee category: Domestic, A or C; Overseas, A or C.
Clostridium acetobutylicum
JCM number: 1419 <-- IAM 19013 <-- S. Sugama <-- ATCC 824 <-- E. R. Weyer.
Biochemistry/Physiology: [5118].
G+C (mol%): 28.0 (Tm) [1385], 33.4 (HPLC) [5118].
DNA-DNA relatedness: [5118].
Phylogeny: 16S rRNA gene (AB595131, S46735, U16166, X78070) [4431,5118].
Other taxonomic data: Polyamine [4622].
Genome sequence: AE001437 [5028].
Quality control by DNA sequences: 16S rRNA gene (AB595131).
Production: butanol and acetone [497].
Assay: p-aminobenzoic acid [497].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 08097.
  
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Publication(s) using this strain [A07004, A11015, A11028]
Fee category: Domestic, A or C; Overseas, A or C.
Clostridium spiroforme
JCM number: 1432 <-- C. Kaneuchi <-- E. P. Cato VPI C28-23-1A.
Source: Human feces [1377].
G+C (mol%): 27.4 (Tm) [639].
DNA-DNA relatedness: [1377].
Phylogeny: 16S rRNA gene (X73441) [3374].
Other taxonomic data: Protein profile [2652].
Genome sequence: ABIK00000000.
Quality control by DNA sequences: 16S rRNA gene (AB818948).
  
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Publication(s) using this strain [A08278, A09198, A10272, A12041]
Fee category: Domestic, A or C; Overseas, A or C.
Clostridium sticklandii
JCM number: 1433 <-- ATCC 12662 <-- A. C. Schwartz <-- T. C. Stadtman.
Source: Mud water.
Fatty acid: [1386].
G+C (mol%): 31 [1375].
Phylogeny: 16S rRNA (M26494) [4035].
Other taxonomic data: Protein profile [2652].
Genome sequence: FP565809.
More information: Metabolism of amino acid [1384,1423,1707].
Fee category: Domestic, A or C; Overseas, A or C.
Micrococcus luteus
JCM number: 1464 <-- IAM 1056 <-- IFO 3333 <-- ATCC 4698 <-- A. Fleming.
Biochemistry/Physiology: [5187].
Cell wall: [251,1202,5102].
Fatty acid: [1204,5187].
Quinone: MK-8, MK-7 [1181], MK-8 in PBY medium and MK-8 + MK-8(H2) in GPS medium [3008].
Polar lipid: [265].
G+C (mol%): 72 [1258], 72.8 [1201], 73.3 [1184,1187], 73.6 (HPLC) [2312].
DNA-DNA relatedness: [1203,5187].
Phylogeny: 16S rRNA gene (AF542073, AJ536198) [5484], 5S rRNA (K02682) [2253], 23S rRNA gene (X06484).
Other taxonomic data: Transformation [1208,2304]; Cytochrome pattern [1213]; Ribosomal protein [3945].
Taxonomy: [1202,1211,5187].
Genome sequence: CP001628.
Publication(s) using this strain [B04107, A04168, A04170, A04172, A05184, A07173, A12077, A12346]
Fee category: Domestic, A or C; Overseas, A or C.
Bacillus subtilis subsp. subtilis
JCM number: 1465 <-- IAM 12118 <-- ATCC 6051 <-- H. J. Conn strain Marburg.
Biochemistry/Physiology: [1699,2949].
Numerical taxonomy: [2949].
Cell wall: meso-A2pm [251].
G+C (mol%): 43.0 [1703], 45.6 (UV) [2313], 42.9 (Tm) 43.1 (Bd) [2214].
DNA-DNA relatedness: [1694,1699].
Phylogeny: 16S rRNA (AB042061, AB598736, X60646) [3047].
Other taxonomic data: Pyrolysis [1699]; Ribosomal protein [3945,3947]; Whole-cell protein profile [4155].
Taxonomy: [5156].
Genome sequence: ABQL00000000.
Quality control by DNA sequences: 16S rRNA gene (AB598736).
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 08099.
Publication(s) using this strain [A04032, A04050, B04113, A04218, A05027, A05166, A05182, A05201, A05231, A06010, A06038, A06212, A06220, A07007, A07155, A07209, A07252, A08254, A09005, A09183, A09188, A09254, A10008, A10225, A10227, A10252, A10272, A11021, A11312, A12003, A12045, A12067, A12096, A12286, A12342]
Fee category: Domestic, A or C; Overseas, A or C.
Klebsiella pneumoniae subsp. rhinoscleromatis
JCM number: 1664 <-- R. Sakazaki 191 <-- ATCC 13884 <-- NCTC 5046 <-- E. Snijders R-70.
Source: Nose of a patient, Sumatra [3052].
Biochemistry/Physiology: [3052].
Phylogeny: 16S rRNA gene (AF130983).
Genome sequence: ACZD00000000.
Fee category: Domestic, A or C; Overseas, A or C.
Proteus mirabilis
JCM number: 1669 <-- R. Sakazaki 4030 <-- ATCC 29906 <-- CDC PR14.
Biochemistry/Physiology: [1730].
DNA-DNA relatedness: [1730].
Phylogeny: 16S rRNA gene (AF008582, AJ301682).
Genome sequence: ACLE00000000.
Publication(s) using this strain [A04168, A04197, A07173, A11246, A12326]
Fee category: Domestic, A or C; Overseas, A or C.
Providencia alcalifaciens
JCM number: 1673 <-- R. Sakazaki <-- ATCC 9886 <-- R. E. Buchanan <-- L. de Salles Gomes.
Source: Feces [497].
Serotype: O19:H2 [497].
Phylogeny: 16S rRNA gene (AJ301684).
Other taxonomic data: No gas from glucose [497].
Genome sequence: ABXW00000000.
Publication(s) using this strain [A11246, A12326]
Fee category: Domestic, A or C; Overseas, A or C.
Anaerococcus tetradius
JCM number: 1964 <-- T. Ezaki GIFU 7672.
Source: Vaginal discharge [2831].
Biochemistry/Physiology: [2831,5052].
Cell wall: Lys, D-Glu [5052].
Fatty acid: [2831].
G+C (mol%): 30.0 [2831].
DNA-DNA relatedness: [2831].
Phylogeny: 16S rRNA gene (D14142), [5052].
Genome sequence: ACGC00000000.
Publication(s) using this strain [A12071]
Fee category: Domestic, A or C; Overseas, A or C.
Debaryomyces hansenii
JCM number: 1990 <-- IFO 0083 <-- HUT 7056 <-- CLMR <-- CBS 767 <-- CL.
Biochemistry/Physiology: [1777].
Quinone: Q-9 [1777].
Enzyme electrophoretic profile: [1778].
G+C (mol%): 36.8 [1777].
DNA-DNA relatedness: [1777].
Phylogeny: 18S rRNA [3197], 25S rRNA [3197], 26S rRNA gene (U45808) [4293].
Other taxonomic data: PMR spectrum of polysaccharide [1777].
Taxonomy: [1777].
Genome sequence: Project ID: 13832.
More information: DNA barcode marker [9081].
Publication(s) using this strain [A12345]
Fee category: Domestic, A or C; Overseas, A or C.
Lactobacillus johnsonii
JCM number: 2012 <-- ATCC 33200 <-- VPI 7960 <-- D. W. Lambe, Jr.
Source: Human blood.
G+C (mol%): 33.0 (Tm) [3068].
DNA-DNA relatedness: [1672,3068].
Phylogeny: 16S rRNA gene (AJ002515).
DNA typing: Amplified rRNA gene restriction analysis [4956], AFLP [4724], RAPD-PCR [4724], ribotype [4925].
Other taxonomic data: SDS-PAGE [4724].
Genome sequence: ACGR00000000.
More information: Human mucosal adhesion [4689].
Quality control by DNA sequences: 16S rRNA gene (AB289175).
Publication(s) using this strain [A04059, A04075, A06217, A07011, A09007, A09231, A10219, A10239, A11280]
Fee category: Domestic, A or C; Overseas, A or C.
Mitsuokella multacida
JCM number: 2054 <-- T. Mitsuoka A 405-1.
Source: Human feces [069].
Biochemistry/Physiology: Group IIa [069,1878].
Cell wall: [1878].
Fatty acid: [1878,3156,3521].
Enzyme electrophoretic profile: [3863].
G+C (mol%): 57.3 [069], 57.9 [3156].
Phylogeny: 16S rRNA gene (X81878) [6176].
Taxonomy: [2061].
Genome sequence: ABWK00000000.
Publication(s) using this strain [A04184, A05029, A08278, A12296]
Fee category: Domestic, A or C; Overseas, A or C.
Bacillus cereus
JCM number: 2152 <-- IAM 12605 <-- NCIB 9373 <-- R. E. Gordon.
Biochemistry/Physiology: [1693,2949].
Numerical taxonomy: API [2275], [2949].
Cell wall: meso-A2pm [251].
G+C (mol%): 35.6 (UV) [2313], 36.2 (Bd), 35.7 (Tm) [2214].
DNA-DNA relatedness: [1695,2313].
Phylogeny: 16S rRNA gene (D16266, X55060, DQ207729, AB598737) [3047,3574].
Genome sequence: AE016877.
More information: Nutrition [1701].
Quality control by DNA sequences: 16S rRNA gene (AB598737).
Production: restriction endonuclease Bce14579.
Publication(s) using this strain [A04032, A04033, A04080, A04149, A04167, A04188, A04218, A05024, A05027, A05166, A05184, A05195, A05231, A06010, A06029, A06220, A07006, A07007, A07009, A07271, A08246, A08254, A09005, A09007, A10008, A10063, A10253, A10272, A11021, A11053, A12096, A12326]
Fee category: Domestic, A or C; Overseas, A or C.
Chryseobacterium gleum
JCM number: 2410 <-- B. Holmes F93.
Source: High vaginal swab [647].
Biochemistry/Physiology: [647].
G+C (mol%): 37.6±1.0 (Tm) [647].
DNA-DNA relatedness: [647].
Phylogeny: 16S rRNA gene (AY468449, M58772).
Other taxonomic data: Antibiotic susceptibility [647].
Genome sequence: ACKQ00000000.
Fee category: Domestic, A or C; Overseas, A or C.
Staphylococcus warneri
JCM number: 2415 <-- Y. Kosako <-- R. Sakazaki <-- ATCC 27836 <-- W. E. Kloos AW 25.
Source: Human skin [979].
Biochemistry/Physiology: [979].
Cell wall: [979].
G+C (mol%): 34.2 (Tm) [979].
Phylogeny: 16S rRNA gene (L37603).
Genome sequence: ACPZ01000000.
Publication(s) using this strain [A04044, A07172, A07173, A08193, A11278]
Fee category: Domestic, A or C; Overseas, A or C.
Staphylococcus saprophyticus subsp. saprophyticus
JCM number: 2427 <-- Y. Kosako <-- R. Sakazaki <-- ATCC 15305 <-- NCTC 7292 <-- S. Cowan S-41.
Source: Urine [978].
Biochemistry/Physiology: [978].
Cell wall: [978].
G+C (mol%): 33.5±1 (Tm) [978].
Phylogeny: 16S rRNA gene (D83371, L37596).
Genome sequence: AP008934.
More information: Lysostaphin susceptibility [978].
Publication(s) using this strain [A04066, A07172, A10290, A11278]
Fee category: Domestic, A or C; Overseas, A or C.
Bacillus subtilis
JCM number: 2499 <-- ATCC 6633 <-- N. R. Smith 231 <-- K. F. Kellerman.
Numerical taxonomy: API [2275].
Quinone: MK-7 [1638].
Genome sequence: ADGS00000000.
Application: Sterility test (Japanese Pharmacopoeia, 14 ed.); Microbial limit test (Japanese Pharmacopoeia, 15 ed.).
Publication(s) using this strain [A05231, A06029, A07271, A10312]
Fee category: Domestic, A or C; Overseas, A or C.
Bacillus licheniformis
JCM number: 2505 <-- CCM 2145 <-- R. E. Gordon <-- T. Gibson 46.
Biochemistry/Physiology: [1693,1699,2949,3056].
Numerical taxonomy: API [2275], [2949,3056].
Cell wall: meso-A2pm [251].
G+C (mol%): 44.7 (Bd), 46.4 (Tm) [2214], 46.5 (Tm) [3056].
DNA-DNA relatedness: [1699].
Phylogeny: 16S rRNA gene (X60623) [3047].
Other taxonomic data: Pyrolysis [1699].
Genome sequence: AE017333.
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 06219.
Publication(s) using this strain [A04032, A04077, B04113, A04168, A04170, A05027, A05060, A05231, A06049, A10011]
Fee category: Domestic, A or C; Overseas, A or C.
Methylobacterium extorquens
JCM number: 2805 <-- T. Urakami TK 0004 <-- NCIB 9133 <-- P. H. A. Sneath D355.
Biochemistry/Physiology: [1021,1023].
Numerical taxonomy: [2308].
Fatty acid: [1021,1023].
Quinone: Q-10 [1021].
Enzyme electrophoretic profile: [1022].
DNA-DNA relatedness: [2311].
Taxonomy: [2310,2642].
Genome sequence: CP001510.
More information: Facultative methylotroph [1023].
Fee category: Domestic, A or C; Overseas, A or C.
Methylobacterium radiotolerans
JCM number: 2831 <-- IAM 12098 <-- H. Ito and H. Iizuka strain O-1.
Source: Japanese unhulled old rice [1680].
Biochemistry/Physiology: [1023].
Fatty acid: [1023].
Quinone: Q-10 [1023].
Phylogeny: 16S rRNA gene (AB175641).
Taxonomy: [1023,1680,2309].
Genome sequence: CP001001.
More information: Facultative methylotroph [1023]; γ-Ray resistance [1680].
Publication(s) using this strain [A11288, A12279]
Fee category: Domestic, A or C; Overseas, A or C.
Streptosporangium roseum
JCM number: 3005 <-- KCC A-0005 <-- NI 9100 <-- J. N. Couch 27-b (UNCC 27).
Source: Garden soil, Chapel Hill, NC, USA [1297].
Numerical taxonomy: [2867,3562].
Cell wall: Chemotype III B [991,2435,3542]; N-acetyl Mur [993,4176].
Fatty acid: [2354,3324,3562,4958].
Quinone: MK-9(H4), MK-9(H2), MK-9(H6) [916,2354], MK-9(III,VIII-H4), MK-9(H2), MK-9 [2609,3324,3542,3562].
Polar lipid: [3562], type PIV [756,3542].
G+C (mol%): 70.6 (Chemical) [752], 70.3 (Tm) [1567], 70 (HPLC) [3324].
DNA-DNA relatedness: [762,1567,3324].
Phylogeny: 16S rRNA catalog [2331,2858], 16S rRNA gene (U48996, X70425, X89947) [3484,4124,4125], 5S rRNA (D13620) [3324].
Other taxonomic data: Ribosomal protein [2962,3544].
Genome sequence: CP001814 [8216].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 08113.
Publication(s) using this strain [A05148, A11016]
Fee category: Domestic, A or C; Overseas, A or C.
Saccharomonospora viridis
JCM number: 3036 <-- KCC A-0036 <-- NRRL B-3044 <-- E. Küster P-101.
Source: Peat, Ireland [1121].
Morphology: [2799].
Biochemistry/Physiology: [1121,2338,2407,3259].
Numerical taxonomy: [1053].
Cell wall: A2pm [2963], chemotype IV A [1053,1086,2338]; cell wall sugars [3312]; N-acetyl Mur [4176].
Fatty acid: [2338,2377,2383].
Quinone: MK-9(H4), MK-8(H4) [2338,2377].
Polar lipid: [2377].
Enzyme electrophoretic profile: [2407].
G+C (mol%): 69 (Tm) [827].
DNA-DNA relatedness: [827,2862,4584].
Phylogeny: 16S rRNA gene (X54286, Z38007) [2479,2862,3761], 23S rRNA (X75548) [3588], RNase P RNA gene (AF012805) [4508].
DNA typing: Restriction pattern of chromosomal DNA [2407], ribotyping [4122], 16S rRNA gene RFLP [4219].
Other taxonomic data: Protein profile [2407]; Ribosomal protein [2932,2962,3656,3947]; 16S-23S rRNA ITS (U73426), 23S-5S rRNA ITS (U73427) [4231].
Taxonomy: [2407,3259].
Genome sequence: CP001683 [8211].
Fee category: Domestic, A or C; Overseas, A or C.
Rothia dentocariosa
JCM number: 3067 <-- KCC A-0067 <-- L. K. Georg W858 <-- G. D. Roth XDIA.
Source: Carious teeth [739].
Biochemistry/Physiology: [739,5898].
Cell wall: Lys, Ala, Glu [2401].
Fatty acid: [2401].
Quinone: MK-7 [1055,2401].
Polar lipid: DPG, PG [1055,2401].
G+C (mol%): 68.0-69.7 (Tm) [1424], 54.1 (Tm) [2293].
DNA-DNA relatedness: [5898].
Phylogeny: 16S rRNA (M59055).
Other taxonomic data: Lipomannan [3733].
Taxonomy: Emended description [5898].
Genome sequence: CP002280.
Fee category: Domestic, A or C; Overseas, A or C.
Thermomonospora curvata
JCM number: 3096 <-- KCC A-0096 <-- A. Henssen B9.
Source: Straw [702].
Biochemistry/Physiology: [702,1053,2338].
Numerical taxonomy: [1053].
Cell wall: Chemotype III C [1296,2338]; N-acetyl Mur [4176].
Fatty acid: [2338].
Quinone: MK-9(H6), MK-9(H8) [3176].
Phylogeny: 16S rRNA catalog [2331,2858], 16S rRNA gene (AB588631, AF002262, D86945, X97893) [4183,4212,4333].
Other taxonomic data: Polyamine [2349]; Ribosomal protein [3952]; 16S-23S rRNA ITS (AF134112) [4887].
Genome sequence: CP001738 [8556].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 08115.
Fee category: Domestic, A or C; Overseas, A or C.
Intrasporangium calvum
JCM number: 3097 <-- KCC A-0097 <-- CUB 430 <-- H. A. Lechevalier <-- L. V. Kalakoutskii 7 KIP.
Source: Air [698].
Morphology: [1057].
Biochemistry/Physiology: [698,8946,9056].
Cell wall: Chemotype I [991]; N-acetyl Mur [4176]; Gal, Man, Glc [9056].
Fatty acid: i-C14:0, i-C15:0, a-C15:0, i-C16:0, i-C16:1 [5213,8946,9056].
Quinone: MK-8 [916], MK-8(H4) [8946,9056].
Polar lipid: Type PIV [756], PE, DPG, PG, PI, PIM, NPG [9056].
G+C (mol%): 68.2 (HPLC) [5213], 68.8 (HPLC) [9056].
DNA-DNA relatedness: [9056].
Phylogeny: 16S rRNA gene (AJ566282, D85486) [4183], RNase P RNA gene (AF110051) [4865].
Other taxonomic data: Polyamine [4623].
Genome sequence: CP002343 [8554].
Fee category: Domestic, A or C; Overseas, A or C.
Actinoplanes missouriensis
JCM number: 3121 <-- KCC A-0121 <-- A. Domnas UNCC 431.
Source: Soil, near Hamilton, MO, USA [684].
Biochemistry/Physiology: [684,1827,2867].
Numerical taxonomy: [2867].
Cell wall: meso- and 3OH-A2pm [1827]; N-glycolyl Mur [993,2330].
Fatty acid: [2330,2867].
Quinone: MK-9(H4) [2330,2867].
Polar lipid: Type PII [756,2330].
DNA-DNA relatedness: [762].
Phylogeny: 16S rRNA gene (AB037008, AJ277572) [5066,5223], gyrB (AB014130) [4682].
Genome sequence: AP012319 [9314].
Fee category: Domestic, A or C; Overseas, A or C.
Geodermatophilus obscurus
JCM number: 3152 <-- KCC A-0152 <-- G. M. Luedemann G-20.
Source: Soil, Amargosa Desert, NV, USA [696].
Biochemistry/Physiology: [696].
Numerical taxonomy: [987].
Cell wall: Chemotype III C [696]; N-acetyl Mur [4176].
Quinone: MK-9(H4) [916].
Polar lipid: Type PII [757].
Phylogeny: 16S rRNA catalog [2331,2863], 16S rRNA gene (L40620, X92356) [4217].
Genome sequence: CP001867 [8217].
Fee category: Domestic, A or C; Overseas, A or C.
Gordonia bronchialis
JCM number: 3198 <-- KCC A-0198 <-- M. Tsukamura 3410.
Source: Sputa of patients with pulmonary disease [734].
Biochemistry/Physiology: [734,737,4209,4234].
Numerical taxonomy: [737,1155,2073,2964,3751].
Cell wall: Chemotype IV A [737]; N-glycolyl Mur [276,4176].
Fatty acid: [4209,4234].
Quinone: MK-9(H2) [391,2294].
Polar lipid: [751].
G+C (mol%): 65 (Tm) [486,753], 65.9 (Tm) [3751], 65.5 (Tm) [5453].
DNA-DNA relatedness: [753,3751].
Phylogeny: 16S rRNA gene (X75903, X79287, X81919) [2434,3591,3820,3951,3956], gyrB (AB438182), secA1 (AB437910) [8445].
Other taxonomic data: Mycolic acid [1153,4234,4768]; Ribosomal protein [3947]; Mycobactin [1980].
Taxonomy: [2434].
Genome sequence: CP001802 [8215].
Fee category: Domestic, A or C; Overseas, A or C.
Actinosynnema mirum
JCM number: 3225 <-- KCC A-0225 <-- IMRU 3971 <-- T. Hasegawa 101.
Source: Grass blade, the Raritan River, NJ, USA [690].
Cell wall: Chemotype III C [690,1818]; N-acetyl Mur [4176].
Polar lipid: Type PII [757].
Phylogeny: 16S rRNA gene (AF328679, D85475, X84447) [3762,4183].
Genome sequence: CP001630 [8208].
Publication(s) using this strain [A05007]
Fee category: Domestic, A or C; Overseas, A or C.
Gordonia bronchialis
JCM number: 3231 <-- KCC A-0231 <-- M. Goodfellow N654 <-- M. Tsukamura 3410.
Source: Sputa of patients with pulmonary disease [734].
Biochemistry/Physiology: [734,737,4209,4234].
Numerical taxonomy: [737,1155,2073,3751].
Cell wall: Chemotype IV A [737]; N-glycolyl Mur [276,4176].
Fatty acid: [4209,4234].
Quinone: MK-9(H2) [391,2294].
Polar lipid: [751].
G+C (mol%): 65 (Tm) [486,753], 65.9 (Tm) [3751], 65.5 (Tm) [5453].
DNA-DNA relatedness: [753,3751].
Phylogeny: 16S rRNA gene (X75903, X79287, X81919) [2434,3591,3820,3951,3956], gyrB (AB438182), secA1 (AB437910) [8445].
Other taxonomic data: Mycolic acid [1153,4234,4768]; Ribosomal protein [3947]; Mycobactin [1980].
Taxonomy: [2434].
Genome sequence: CP001802 [8215].
Fee category: Domestic, A or C; Overseas, A or C.
Kitasatospora setae
JCM number: 3304 <-- KCC A-0304 <-- S. Ōmura KM-6054.
Source: Soil, Setagaya-ku, Tokyo, Japan [1220].
Biochemistry/Physiology: [1220,3261].
Cell wall: LL- and meso-A2pm [912,1220,2963,3261], Gly; Gal [1220].
Fatty acid: [2365,2376].
Quinone: MK-9(H6), MK-9(H8) [3261].
Polar lipid: Type PII [1220,3261].
G+C (mol%): 72.5 (Tm) [2365,2376], 73.1 (HPLC) [1910], 73.2 (HPLC) [3261].
DNA-DNA relatedness: [2365,2376,2861,3261].
Phylogeny: 16S rRNA gene (AB022868, AB184576, M55220, U93332) [2963,4277,5031].
Other taxonomic data: Phage typing [2963]; Ribosomal protein [3544].
Taxonomy: [2963,4277].
Genome sequence: AP010968 [8712].
More information: Mode of submerged spore formation [2965].
Production: setamycin [1411].
Publication(s) using this strain [A04007, A11245]
Fee category: Domestic, A or C; Overseas, A or C.
Candida glabrata
JCM number: 3761 <-- CBS 138 <-- NRRL Y-65 <-- F. W. Tanner.
Source: Faeces [357].
Fatty acid: [2225].
Quinone: Q-6 [5119].
Serology: [2224].
Phylogeny: 26S rRNA gene (U44808) [4293].
Other taxonomic data: Cellular carbohydrate compositions [5119].
Taxonomy: [200].
Genome sequence: Project ID: 13831.
Publication(s) using this strain [A04004]
Fee category: Domestic, A or C; Overseas, A or C.
Acidithiobacillus thiooxidans
JCM number: 3867 <-- Y. Katayama THI142 <-- IAM 12134.
Source: Kimmeridge clay.
Fatty acid: C16:0, C16:1+ΔC17:0, C18:1+ΔC19:0, 3OH-C14:0 [2142].
Quinone: Q-8 [2142].
G+C (mol%): 52 (Tm) [2287].
DNA-DNA relatedness: [2287].
Phylogeny: 16S rRNA gene (Y11596).
Taxonomy: Group III-3 [2142].
Genome sequence: AFOH00000000 [8957].
Publication(s) using this strain [A05034]
Fee category: Domestic, A or C; Overseas, A or C.
Providencia rustigianii
JCM number: 3953 <-- Y. Kosako 85551 <-- R. Sakazaki 85013 <-- CDC 132-68.
Biochemistry/Physiology: [1937].
DNA-DNA relatedness: [1937].
Phylogeny: 16S rRNA gene (AM040489).
Other taxonomic data: Antibiotic susceptibility [1937].
Taxonomy: [1937].
Genome sequence: ABXV00000000.
More information: Formerly known as Providencia alcalifaciens Biogroup 3 [1937].
Fee category: Domestic, A or C; Overseas, A or C.
"Streptomyces pristinaespiralis"
JCM number: 4507 <-- KCC S-0507 <-- IFO 13074 <-- SAJ <-- ISP 5338 <-- NRRL 2958 <-- Rhône-Poulenc 5647.
Biochemistry/Physiology: [685].
Numerical taxonomy: [760,2933].
Genome sequence: CM000950.
Production: pristinamycin [1621].
Fee category: Domestic, A or C; Overseas, A or C.
Streptomyces griseus
JCM number: 4626 <-- KCC S-0626 <-- IFO 13350 <-- SAJ <-- ISP 5235 (Streptomyces bikiniensis).
Biochemistry/Physiology: [687].
Phylogeny: 16S rRNA gene (AB045866, AB184347).
Taxonomy: [693].
Genome sequence: AP009493 [7369].
Production: streptomycin and grisemycin [9292].
Publication(s) using this strain [A10312]
Fee category: Domestic, A or C; Overseas, A or C.
Streptomyces clavuligerus
JCM number: 4710 <-- KCC S-0710 <-- MCRL 0774 <-- NRRL 3585 <-- Eli Lilly & Co.
Source: Soil, South America [803].
Biochemistry/Physiology: [803].
Numerical taxonomy: [2933].
Quinone: MK-9(H8), MK-9(H6) [2332].
Phylogeny: 16S rRNA gene (AB045869, AB184343, AY999718).
Genome sequence: ABJH00000000, CM000913, CM001015 [8874,8937].
Production: cephalosporins, penicillin N [803,4469] and clavulanic acid.
Application: Cyclization of phenylacetyl-L-cysteinyl-D-valine to benzylpenicillin using cell-free extracts [4471].
Publication(s) using this strain [A10312]
Fee category: Domestic, A or C; Overseas, A or C.
Saccharopolyspora erythraea
JCM number: 4748 <-- KCC S-0748 <-- IFO 13426 <-- SAJ <-- ISP 5517 <-- Eli Lilly & Co. M5-12559.
Source: Soil, the Philippines.
Biochemistry/Physiology: [693,2335].
Numerical taxonomy: [760].
Cell wall: Chemotype IV A [2335]; cell wall sugars [3312].
Fatty acid: [2377].
Quinone: MK-9(H4), MK-10(H4) [2335,2377].
Polar lipid: [2377], type PIII [2335].
Enzyme electrophoretic profile: [2815].
DNA-DNA relatedness: [2335,2862,2891].
Phylogeny: 16S rRNA gene (X53198) [2479,2862].
DNA typing: Restriction pattern of chromosomal DNA [2815].
Other taxonomic data: Protein profile [2815].
Genome sequence: AM420293 ((http://jblseqdat.bioc.cam.ac.uk/gnmweb/index.html [7254].
Production: erythromycins A and B.
Fee category: Domestic, A or C; Overseas, A or C.
"Streptomyces davawensis"
JCM number: 4913 <-- KCC S-0913 <-- R. Shinobu 768.
Source: Soil, near Davao Air Port, Mindanao, the Philippines [748].
Biochemistry/Physiology: [748].
Genome sequence: HE971709 [9294].
Production: antibiotic 768 [1723] and roseoflavin [9301,9302].
Publication(s) using this strain [A07199, A12281]
Fee category: Domestic, A or C; Overseas, A or C.
"Streptomyces cattleya"
JCM number: 4925 <-- KCC S-0925 <-- T. Furumai <-- NRRL 8057 <-- Merck Sharp & Dohme Res. Labs. MA-4297.
Source: Soil, NJ, USA [837].
Biochemistry/Physiology: [837].
Phylogeny: 16S rRNA gene (AB045870, AB045871, AB184571).
Genome sequence: CP003219, FQ859185, plasmid pSCAT (CP003229, FQ859184) [9002].
Production: thienamycin [837], 4-fluorothreonine, fluoroacetic acid [3940] and β-ethynylserine [3941].
Publication(s) using this strain [A06166]
Fee category: Domestic, A or C; Overseas, A or C.
"Streptomyces sviceus"
JCM number: 4929 <-- KCC S-0929 <-- NRRL 5439 <-- UC 5370.
Source: Soil [1544].
Biochemistry/Physiology: [1544].
Phylogeny: 16S rRNA gene (AB184559).
Genome sequence: CM000951.
Production: antibiotic U-42,126 [1544].
Fee category: Domestic, A or C; Overseas, A or C.
Streptomyces ghanaensis
JCM number: 4963 <-- KCC S-0963 <-- DSM 40746 <-- Farbwerke Hoechst AG, FH 1290.
Source: Soil, Ghana [220].
Biochemistry/Physiology: [220,1338].
Numerical taxonomy: [2933].
Phylogeny: 16S rRNA gene (AB184662, AJ781384, AY999851).
Genome sequence: ABYA00000000.
Production: moenomycin [1101,1338].
Fee category: Domestic, A or C; Overseas, A or C.
Streptomyces viridochromogenes
JCM number: 4977 <-- KCC S-0977 <-- K. Isono <-- H. Zähner Tü 494.
Source: Soil, Kamerun [1462].
Numerical taxonomy: [2933].
Genome sequence: GG657757.
Production: phosphinothricin and phosphinothricyl-alanyl-alanine [1462].
Fee category: Domestic, A or C; Overseas, A or C.
Streptomyces avermitilis
JCM number: 5070 <-- KCC S-1070 <-- NRRL 8165 <-- Merck Sharp & Dohme Res. Labs. MA-4680.
Source: Soil, Kawana, Ito City, Shizuoka Pref., Japan [1418].
Biochemistry/Physiology: [1418,5349,5351].
Cell wall: LL-A2pm [5349,5351]; N-acetyl Mur [5351].
Fatty acid: [5351].
Quinone: MK-9(H6) [5349], MK-9(H6), MK-9(H8) [5351].
Polar lipid: PE [5351].
G+C (mol%): 70.3 (HPLC) [5351], 70.7 (Genome sequence) [5438].
DNA-DNA relatedness: [5351].
Phylogeny: 16S rRNA gene (AB078897, AF145223) [5349,5351].
Genome sequence: BA000030 ((http://avermitilis.ls.kitasato-u.ac.jp/ [5207,5438].
Production: avermectins [1418].
Publication(s) using this strain [A05212, A06243]
Fee category: Domestic, A or C; Overseas, A or C.
Alicyclobacillus acidocaldarius subsp. acidocaldarius
JCM number: 5260 <-- DSM 446 <-- ATCC 27009 <-- T. D. Brock 104-IA.
Source: Acid hot spring, Nymph Creek, Yellowstone National Park, WY, USA [2285].
Biochemistry/Physiology: [2285].
G+C (mol%): 62.2 (Bd) [2285], 62.3 (Bd), 60.3 (Tm) [2214].
Phylogeny: 16S rRNA gene (X60742) [3054].
Taxonomy: [2285,3054].
Genome sequence: CP001727 [8230].
Publication(s) using this strain [A04179]
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides ovatus
JCM number: 5824 <-- ATCC 8483 <-- A. H. Eggerth.
Source: Human feces [3513,4007].
Biochemistry/Physiology: [1857].
Fatty acid: [3521].
Enzyme electrophoretic profile: [3863].
G+C (mol%): 40.0 (Tm) [4007].
DNA-DNA relatedness: [1857].
Phylogeny: 16S rRNA gene (AB510705, L16484) [3513,8440,8884], dnaJ (AB619884) [8884], gyrB (AB619922) [8884], hsp60 (AB510683) [8355,8440,8884], recA (AB619960) [8884], rpoB (AB619998) [8884].
Genome sequence: AAXF00000000.
More information: Association with Japanese cedar pollinosis [7496].
Quality control by DNA sequences: 16S rRNA gene (AB510705) [8884], dnaJ (AB619884) [8884], gyrB (AB619922) [8884], hsp60 (AB510683) [8884], recA (AB619960) [8884], rpoB (AB619998) [8884].
Application: Control strain for BBL Minitek Identification System [1857].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 09006.
Publication(s) using this strain [A04020, A04177, A05029, B06186, A07171, A07269, A08012, A08278, A09007, A09019, A09198, A10101, A10209, A10221, A10272, A11280, A11289, A12061, A12326]
Fee category: Domestic, A or C; Overseas, A or C.
Parabacteroides distasonis
JCM number: 5825 <-- ATCC 8503 <-- A. H. Eggerth.
Source: Human feces [4007].
Fatty acid: [3521,6399].
Quinone: MK-9, MK-10 [3880,6399].
Enzyme electrophoretic profile: [3863,4443].
G+C (mol%): 44.0 (Tm) [4007].
DNA-DNA relatedness: [4007].
Phylogeny: 16S rRNA gene (AB238922) [6399], hsp60 (AB547566) [8355].
Genome sequence: CP000140 [8487].
Quality control by DNA sequences: 16S rRNA gene (AB238922), hsp60 (AB547566).
Production: catalase and superoxide dismutase [081,1954].
Publication(s) using this strain [A04177, A04184, B06080, A07171, A07180, A07269, A08007, A08012, A08170, A08278, A10221, A12061, B12203]
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides vulgatus
JCM number: 5826 <-- ATCC 8482 <-- A. H. Eggerth.
Source: Human feces [4007].
Biochemistry/Physiology: [1857].
Fatty acid: [3521].
Enzyme electrophoretic profile: [3863,4443].
G+C (mol%): 41.0 (Tm) [4007].
DNA-DNA relatedness: [4007].
Phylogeny: 16S rRNA gene (AB050111, AB510712, M58762), [3513,3888,8440,8884], dnaJ (AB619895) [8884], gyrB (AB619933) [8884], hsp60 (AB510694) [8355,8440,8884], recA (AB619971) [8884], rpoB (AB620009) [8884].
Taxonomy: [081,1857].
Genome sequence: CP000139 [8487].
More information: Association with Japanese cedar pollinosis [7496].
Quality control by DNA sequences: 16S rRNA gene (AB510712), dnaJ (AB619895), gyrB (AB619933), hsp60 (AB510694), recA (AB619971), rpoB (AB620009).
Application: Sterility test [081], (Japanese Pharmacopoeia, 14 ed.).
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 06281.
Publication(s) using this strain [A04168, A04177, A04184, A05029, B05106, A07009, A07171, A07179, A07180, A07269, A08012, A08019, A08278, A09256, A10013, A10209, A10221, A10249, B11190, B11209, A11238, A11280, A11289, A11311, A12295]
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides thetaiotaomicron
JCM number: 5827 <-- ATCC 29148 <-- E. P. Cato VPI 5482 <-- H. Werner E 50.
Source: Human feces [3513,4007].
Fatty acid: [2515,3521].
Quinone: MK-10, MK-11 [3880].
Enzyme electrophoretic profile: [3863,4443].
G+C (mol%): 42.0 (Tm) [4007].
DNA-DNA relatedness: [4007].
Phylogeny: 16S rRNA gene (AB510710, M58763) [3513,3888,8440,8884], 5S rRNA [2515], dnaJ (AB619893) [8884], gyrB (AB619931) [8884], hsp60 (AB510692) [8355,8440,8884], recA (AB619969) [8884], rpoB (AB620007) [8884].
Genome sequence: AE015928.
More information: Association with Japanese cedar pollinosis [7496].
Quality control by DNA sequences: 16S rRNA gene (AB510710), dnaJ (AB619893), gyrB (AB619931), hsp60 (AB510692), recA (AB619969), rpoB (AB620007).
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 07419.
  
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Publication(s) using this strain [A04020, A04177, A04184, A05029, B06186, A07171, A07269, A08012, A08278, A09198, A10089, A10209, A10221, A10249, A10272, A11280, A11289, A12061, A12311, A12312]
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides uniformis
JCM number: 5828 <-- ATCC 8492 <-- A. H. Eggerth (Bacteroides thetaiotaomicron).
Source: Human feces [4007].
Biochemistry/Physiology: [6250,6525].
Fatty acid: [3521,6250,6525].
Quinone: MK-10, MK-11 [6525].
Enzyme electrophoretic profile: [3863].
G+C (mol%): 46.0 (Tm) [4007], 47.8 (HPLC) [6250].
DNA-DNA relatedness: [4007,6250].
Phylogeny: 16S rRNA gene (AB510711, L16486) [3513,8440,8884], dnaJ (AB619894) [8884], gyrB (AB619932) [8884], hsp60 (AB510693) [8355,8440,8884], recA (AB619970) [8884], rpoB (AB620008) [8884].
Genome sequence: AAYH00000000.
More information: Association with Japanese cedar pollinosis [7496].
Quality control by DNA sequences: 16S rRNA gene (AB510711), dnaJ (AB619894), gyrB (AB619932), hsp60 (AB510693), recA (AB619970), rpoB (AB620008).
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 06282.
  
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Publication(s) using this strain [A04020, A04177, B06072, B06146, A07171, A07269, A08007, A08012, A10209, A10221, B11209, A11280, A11289, A12061]
Fee category: Domestic, A or C; Overseas, A or C.
Leuconostoc mesenteroides subsp. mesenteroides
JCM number: 6124 <-- ATCC 8293 <-- R. H. Vaughn 37Y.
Source: Fermentating olives.
Biochemistry/Physiology: [3808].
Cell wall: Lys-Ser-Ala [010,3808].
Fatty acid: [2789].
G+C (mol%): 38.7 (Tm) [020].
DNA-DNA relatedness: [593,2471,3773].
Phylogeny: 16S rRNA (M23035) [2983,3121,3127,3808].
DNA typing: Ribotype [4874].
Genome sequence: CP000414.
Quality control by DNA sequences: 16S rRNA gene (AB596935).
Production: dextran [2726].
Publication(s) using this strain [A04011, A04075, A04172, A04218, A05166, A05201, A05204, A06010, A06014, A06220, A07006, A07007, A07209, A08166, A08220, A08246, A08254, A08271, A09005, A10252, A11021, A11044, A11312, A12092]
Fee category: Domestic, A or C; Overseas, A or C.
Deinococcus proteolyticus
JCM number: 6276 <-- IAM 12141 <-- M. Kobatake strain MRP.
Biochemistry/Physiology: [1179].
Cell wall: L-Orn-Gly2 [2640].
Fatty acid: C16:1 [1179,2640].
G+C (mol%): 65 (Tm) [1179,2640].
DNA-DNA relatedness: [1179].
Phylogeny: 16S rRNA gene (Y11331) [4341].
Taxonomy: [2640].
Genome sequence: CP002536, plasmids pDEIPR02 (CP002538), pDEIPR03 (CP002539), pDEIPR04 (CP002540) [9115].
More information: γ-Ray radiation resistant [2640].
Fee category: Domestic, A or C; Overseas, A or C.
Brevibacillus brevis
JCM number: 6285 <-- S. Udaka 47.
Source: Soil.
Biochemistry/Physiology: [3332].
Numerical taxonomy: Cluster ID2 [3332].
Cell wall: S-layer protein profile [3332].
G+C (mol%): 47.2 (HPLC) [3332].
Other taxonomic data: Whole-cell protein profile [4155].
Genome sequence: AP008955.
More information: Secretes large amount of proteins [2576]; Synthesis and secretion of human epidermal growth factor [3336]; Production of human α-amylase [3337].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 8990.
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides helcogenes
JCM number: 6297 <-- Y. Benno P36-108.
Source: Pig abscess [2513].
Morphology: [2513].
Biochemistry/Physiology: [2513,6132,6250].
Fatty acid: [6250].
G+C (mol%): 45.7 (Tm) [2513], 45.0 (HPLC) [6132].
DNA-DNA relatedness: [2513,6132,6250].
Phylogeny: 16S rRNA gene (AB200227, AB510702) [6132,8440,8884], dnaJ (AB619879) [8884], gyrB (AB619917) [8884], hsp60 (AB510679) [8355,8440,8884], recA (AB619955) [8884], rpoB (AB619993) [8884].
Genome sequence: CP002352 [8518].
Quality control by DNA sequences: 16S rRNA gene (AB200227, AB510702), dnaJ (AB619879), gyrB (AB619917), hsp60 (AB510679), recA (AB619955), rpoB (AB619993).
Publication(s) using this strain [B05106, B06072, A08007, A08170, A10209, A10221, A11289]
Fee category: Domestic, A or C; Overseas, A or C.
Campylobacter rectus
JCM number: 6301 <-- T. Mitsuoka <-- A. C. R. Tanner FDC 371.
Source: Human periodontal pocket [2767].
Biochemistry/Physiology: [2767].
Quinone: MK-6, MMK-6 [3880].
Serology: [2768].
G+C (mol%): 43.0 (Tm) [2768].
DNA-DNA relatedness: [2767].
Phylogeny: 16S rRNA gene (AB595133).
Other taxonomic data: Motile strain [2767]; Ultrastructure [2769].
Genome sequence: ACFU00000000.
Quality control by DNA sequences: 16S rRNA gene (AB595133).
Publication(s) using this strain [A10299, A12326]
Fee category: Domestic, A or C; Overseas, A or C.
Prevotella melaninogenica
JCM number: 6325 <-- ATCC 25845 <-- L. V. Holdeman VPI 2381 <-- S. Finegold B282.
Source: Sputum.
Fatty acid: [3521].
Enzyme electrophoretic profile: [3863].
Phylogeny: 16S rRNA gene (AB547693, L16470) [3513], hsp60 (AB547615) [8355].
Genome sequence: ACSI00000000.
Quality control by DNA sequences: 16S rRNA gene (AB547693), hsp60 (AB547615).
Publication(s) using this strain [B04146, A04177, B05153, B07149, A09186, A10218, A10221, A11274]
Fee category: Domestic, A or C; Overseas, A or C.
Porphyromonas asaccharolytica
JCM number: 6326 <-- ATCC 25260 <-- W. E. C. Moore VPI 4198 <-- S. Finegold B440.
Source: Empyema [3113].
Biochemistry/Physiology: [3113].
Fatty acid: [3113,3124,3521].
G+C (mol%): 53.0 (Tm) [3110,3114].
DNA-DNA relatedness: [3110,3114].
Phylogeny: 16S rRNA gene (AB547653, L16490) [3513], hsp60 (AB547573) [8355].
Genome sequence: CP002689.
Quality control by DNA sequences: 16S rRNA gene (AB547653), hsp60 (AB547573).
Publication(s) using this strain [A04177, A07180, A10221]
Fee category: Domestic, A or C; Overseas, A or C.
Prevotella bivia
JCM number: 6331 <-- T. Mitsuoka <-- L. V. Holdeman VPI 6822 <-- D. Balzeric.
Source: Endometrium [2653].
Biochemistry/Physiology: [2653].
Fatty acid: [3521].
Enzyme electrophoretic profile: [3863].
G+C (mol%): 40 (Tm) [2653].
DNA-DNA relatedness: [2653,4725].
Phylogeny: 16S rRNA gene (AB547673, L16475) [3513], hsp60 (AB547594) [8355].
Genome sequence: ADFO00000000.
Quality control by DNA sequences: 16S rRNA gene (AB547673), hsp60 (AB547594).
Publication(s) using this strain [B04146, A04177, B05153, A10218, A10221]
Fee category: Domestic, A or C; Overseas, A or C.
Mycobacterium kansasii
JCM number: 6379 <-- M. Tsukamura 07002 <-- T. Takeya <-- E. H. Runyon P-16.
Source: Human inguinal sinus, Kansas City, MO, USA.
Phylogeny: 16S rRNA (M29575) [3172], 16S rRNA gene (AF480601, AJ536035) [5188,7733].
Genome sequence: CM000636.
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 07543.
Publication(s) using this strain [A04163, A07161, A07162, A11260]
Fee category: Domestic, A or C; Overseas, A or C.
Mycobacterium intracellulare
JCM number: 6384 <-- M. Tsukamura 13085 <-- ATCC 13950 <-- R. E. Gordon 3600 <-- D. Smith (J. T. Cuttino and A. M. McCabe's original strain).
Source: Human lymph node.
Phylogeny: 16S rRNA gene (AJ536036, GQ153276, X52927) [3173,7733], rpoB (EU591497, GQ153307), hsp65 (GQ153290).
Genome sequence: ABIN00000000, CP003322.
More information: A member of Mycobacterium avium complex (MAC).
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 07450.
Publication(s) using this strain [A04163, A07161, A07162, A11260]
Fee category: Domestic, A or C; Overseas, A or C.
Propionibacterium acnes
JCM number: 6473 <-- ATCC 11828 <-- H. Seeliger 417/52 (Corynebacterium liquefaciens).
Source: Subcutaneous abscess.
Cell wall: [1955].
DNA-DNA relatedness: [1955].
Phylogeny: 16S rRNA gene (AB573714).
Genome sequence: CP003084 [8885].
Quality control by DNA sequences: 16S rRNA gene (AB573714).
  
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Publication(s) using this strain [A09192, A09244, A09248, A09249, A11035, A11253]
Fee category: Domestic, A or C; Overseas, A or C.
Pseudoramibacter alactolyticus
JCM number: 6480 <-- Y. Benno <-- T. Mitsuoka <-- ATCC 23263 <-- W. E. C. Moore VPI 0416 <-- A. Prévot DO-4.
Source: Human oral cavity.
Biochemistry/Physiology: [4479].
Cell wall: A type [4479].
G+C (mol%): 61 (HPLC) [4479].
Phylogeny: 16S rRNA [4479], 16S rRNA gene (AB036759).
Genome sequence: AEQN00000000.
Production: formate, acetate, butyrate, caproate and hydrogen [4479].
Publication(s) using this strain [A04168, A10214, A12071]
Fee category: Domestic, A or C; Overseas, A or C.
Anaerococcus prevotii
JCM number: 6508 <-- Y. Benno <-- T. Mitsuoka <-- ATCC 9321 <-- M. Pittman PC1.
Source: Human clinical specimen [5052].
Biochemistry/Physiology: [5052].
Cell wall: Lys, D-Glu [5052].
G+C (mol%): 29-33 (HPLC) [5052].
Phylogeny: 16S rRNA gene (D14139) [5052].
Genome sequence: CP001708 [8224].
More information: Butyrate production from PYG [5052].
Fee category: Domestic, A or C; Overseas, A or C.
Clostridium scindens
JCM number: 6567 <-- G. N. Morris.
Source: Human feces.
G+C (mol%): 45.0 (Tm) [2643].
Phylogeny: 16S rRNA gene (AB020883).
Other taxonomic data: C17 - C20 steroid desmolase [2644].
Genome sequence: ABFY00000000.
Publication(s) using this strain [A09198, A10101]
Fee category: Domestic, A or C; Overseas, A or C.
Acinetobacter baumannii
JCM number: 6841 <-- ATCC 19606 <-- R. Hugh 2208 <-- E. O. King <-- I. G. Schaub 81.
Source: Urine [3050].
Biochemistry/Physiology: [3050].
DNA-DNA relatedness: [3050].
Phylogeny: 16S rRNA gene (AB594765, X81660, Z93435).
Taxonomy: [3050].
Genome sequence: ACQB00000000.
Quality control by DNA sequences: 16S rRNA gene (AB594765).
Publication(s) using this strain [A11246]
Fee category: Domestic, A or C; Overseas, A or C.
Sphingobacterium spiritivorum
JCM number: 6897 <-- E. Yabuuchi GIFU 3101 <-- CDC E7288 <-- Kansas Dept. Hlth. Environ., USA <-- Univ. Kansas Med. Center.
Source: Intrauterine specimen, KS, USA [191].
Biochemistry/Physiology: [191].
Numerical taxonomy: [506].
Fatty acid: [506].
G+C (mol%): 41.0 (Tm) [191].
DNA-DNA relatedness: [506].
Phylogeny: 16S rRNA (D14026), 16S rRNA gene (EF090267, M58778).
Genome sequence: ACHA00000000.
Fee category: Domestic, A or C; Overseas, A or C.
Bifidobacterium angulatum
JCM number: 7096 <-- T. Mitsuoka IV-96 <-- V. Scardovi B677.
Source: Human feces [071].
Biochemistry/Physiology: [3093,3126,4424].
Cell wall: Lys-Asp [2925,3126].
Enzyme electrophoretic profile: [3126,4425].
G+C (mol%): 59.0 (Tm) [071].
DNA-DNA relatedness: [071,3126].
Phylogeny: 16S rRNA (M84775), 16S rRNA gene (D86182).
DNA typing: rRNA gene restriction pattern [4597].
Other taxonomic data: Protein profile [1865].
Genome sequence: ABYS00000000.
More information: Species-specific primer [4521].
Quality control by DNA sequences: 16S rRNA gene (AB507069).
Publication(s) using this strain [A04018, A05011, A05048, A09019, A09026, A09198, A10101, A11050, B11156, A12287]
Fee category: Domestic, A or C; Overseas, A or C.
Saitoella complicata
JCM number: 7358 <-- IAM 12963 <-- S. Goto H-3-9-1.
Source: Soil [2477].
Locality: Laya, Bhutan [2477].
Morphology: [2477].
Biochemistry/Physiology: [2477].
Quinone: Q-10 [2477].
G+C (mol%): 52.9 (Tm) [1822], 51.5±0.1 (HPLC) [2620].
Other taxonomic data: Cellular carbohydrate compositions [1822].
Taxonomy: [2477].
Genome sequence: BACD00000000 [9087].
Publication(s) using this strain [A05213]
Fee category: Domestic, A or C; Overseas, A or C.
Acremonium alcalophilum
JCM number: 7366 <-- Y. Niimura PA-2M.
Source: Sludge from a compost made of pig feces [3362].
Locality: Tsukui-gun, Kanagawa Pref., Japan [3362].
Description: [3362].
Morphology: [3362].
Genome sequence: Project ID: 33785.
More information: An alkalophilic cellulolytic fungus; Dried culture (TNS-F-176428) [3362].
Production: low-temperature-active enzyme degrading CMC, Avicel and xylan [4265,4266,7257,8189].
Publication(s) using this strain [B11292]
Fee category: Domestic, A or C; Overseas, A or C.
Nocardiopsis dassonvillei subsp. dassonvillei
JCM number: 7437 <-- DSM 43111 <-- H. Prauser <-- IMRU 509 <-- P. Thibault.
Biochemistry/Physiology: [2413,2865,3315,4276,4680,5280].
Numerical taxonomy: [987,2414,2864,2865,2899,4680].
Cell wall: meso-A2pm; no characteristic sugars [1567,2413,4680]; N-acetyl Mur [4176].
Fatty acid: [1567,2320,2864,2865,3324,4680,5280].
Quinone: MK-10(H4), MK-10(H6), MK-10(H2) [391,899,1567,2320,2332,2864,2865], MK-10(H2), MK-10, MK-10(II,III-H4) [3324].
Polar lipid: Type PIII (PC, PME) [2864,2865,4680].
G+C (mol%): 69.0 (Tm) [1567,2320].
DNA-DNA relatedness: [1567,2320,3315,4276,4680].
Phylogeny: 16S rRNA catalog [2858], 16S rRNA gene (D85492, X97886) [4183,4212], 5S rRNA (D13617) [3324].
Genome sequence: CP002040 (chromosome 1), CP002041 (chromosome 2) [8555].
Fee category: Domestic, A or C; Overseas, A or C.
Pedobacter heparinus
JCM number: 7457 <-- H. Oyaizu KS 0426 <-- IFO 12017 <-- Nagoya Univ. <-- ATCC 13125 <-- E. D. Korn.
Biochemistry/Physiology: [2419,4460].
Fatty acid: i-C15:0, 2OH-i-C15:0, 3OH-i-C17:0, i-C17:1, n-C16:1 [2419,4460].
Quinone: MK-7 [2419].
G+C (mol%): 40.4 (Tm) [2419], 42.3-43.0 [4460].
DNA-DNA relatedness: [4460].
Phylogeny: 5S rRNA [3169], 16S rRNA gene (AJ438172).
Other taxonomic data: Sensitivity to antibiotics [4460].
Taxonomy: Cluster 4 [2419]; New combination [4460].
Genome sequence: CP001681 [8282].
Publication(s) using this strain [B12307]
Fee category: Domestic, A or C; Overseas, A or C.
Saccharomonospora azurea
JCM number: 7551 <-- R. Hu NA-128.
Source: Soil, Guangyuan City, Sichuan, China [2336].
Biochemistry/Physiology: [2336].
Cell wall: Chemotype IV A [2336]; cell wall sugars [3312].
Phylogeny: 16S rRNA gene (Z38017) [3761], RNase P RNA gene (AF012792) [4508].
DNA typing: Ribotyping [4122], 16S rRNA gene RFLP [4219].
Other taxonomic data: 16S-23S rRNA ITS (U73397), 23S-5S rRNA ITS (U73398, U73399) [4231].
Genome sequence: CM001466 [9114].
More information: β-Lactamase activity [4675].
Fee category: Domestic, A or C; Overseas, A or C.
Legionella pneumophila subsp. pneumophila
JCM number: 7571 <-- GIFU 9134 <-- H. Kobayashi <-- ATCC 33152 <-- R. E. Weaver strain Philadelphia-1 <-- J. E. McDade.
Source: Human lung [3832].
Biochemistry/Physiology: [3832].
DNA-DNA relatedness: [3832].
Phylogeny: 16S rRNA (M36023, M59157), 16S rRNA gene (AB594755).
Genome sequence: AE017354 [8368].
Quality control by DNA sequences: 16S rRNA gene (AB594755).
Publication(s) using this strain [A04168, A04228, A09197, A12059]
Fee category: Domestic, B; Overseas, B.
Anaerococcus hydrogenalis
JCM number: 7635 <-- GIFU 7662.
Source: Human feces [5062].
Biochemistry/Physiology: [5052,5062].
Cell wall: Lys, D-Glu [5052].
G+C (mol%): 31 [5062].
DNA-DNA relatedness: [5062].
Phylogeny: 16S rRNA gene (AB538433, D14140), [5052].
Taxonomy: [5052].
Genome sequence: ABXA00000000.
Quality control by DNA sequences: 16S rRNA gene (AB538433).
Publication(s) using this strain [A08278]
Fee category: Domestic, A or C; Overseas, A or C.
Acidobacterium capsulatum
JCM number: 7670 <-- N. Kishimoto 161.
Source: Mine at Okayama Pref., Japan [2894].
Biochemistry/Physiology: [2894].
Fatty acid: [2894].
Quinone: MK-8 [2894].
G+C (mol%): 60 [2894].
DNA-DNA relatedness: [2894].
Taxonomy: [2894].
Genome sequence: CP001472.
Publication(s) using this strain [A09250, B12081]
Fee category: Domestic, A or C; Overseas, A or C.
Clostridium acetobutylicum
JCM number: 7829 <-- IAM 19012 <-- S. Sugama <-- ATCC 4259 <-- NCTC 619 <-- A. C. Thaysen ("Bacillus butyricus").
Other taxonomic data: Polyamines [4622].
Genome sequence: CP002660.
Production: acetone and n-butanol.
Fee category: Domestic, A or C; Overseas, A or C.
Lactobacillus paracasei subsp. paracasei
JCM number: 8130 <-- NCFB 151 <-- NIRD.
Source: Milk products.
Biochemistry/Physiology: [2833].
DNA-DNA relatedness: [2833].
Phylogeny: 16S rRNA gene (D79212).
DNA typing: Ribotype [4925].
Other taxonomic data: MALDI-TOF MS [9228].
Genome sequence: ACGY00000000.
Quality control by DNA sequences: 16S rRNA gene (AB289225).
Publication(s) using this strain [A04059, A04075, A04172, A06222, A07011, A07013, A08260, A08261, A11280, A12354]
Fee category: Domestic, A or C; Overseas, A or C.
Anaerococcus vaginalis
JCM number: 8138 <-- GIFU 12669.
Source: Ovarian abscess [3242].
Biochemistry/Physiology: [3242,5052].
Cell wall: Ala-Lys(Orn) [3242], Lys-D-Glu [5052].
G+C (mol%): 30.0 (Tm) [3242].
DNA-DNA relatedness: [3242].
Phylogeny: 16S rRNA gene (AB691575, D14146), [5052].
Genome sequence: ACXU00000000.
Quality control by DNA sequences: 16S rRNA gene (AB691575).
Publication(s) using this strain [A12071]
Fee category: Domestic, A or C; Overseas, A or C.
Anaerococcus lactolyticus
JCM number: 8140 <-- GIFU 8586.
Source: Vaginal discharge [3242].
Biochemistry/Physiology: [3242].
Cell wall: Gly-Lys [3242], Lys-D-Glu [5052].
G+C (mol%): 34.0 (Tm) [3242].
DNA-DNA relatedness: [3242].
Phylogeny: 16S rRNA gene (AB673373, D14154), [5052].
Genome sequence: ABYO00000000.
Quality control by DNA sequences: 16S rRNA gene (AB673373).
Publication(s) using this strain [A12071]
Fee category: Domestic, A or C; Overseas, A or C.
Treponema denticola
JCM number: 8153 <-- ATCC 35405 <-- E. C. S. Chan strain a.
Source: Human oral cavity.
Phylogeny: 16S rRNA gene (AB621358, AF139203).
Genome sequence: AE017226 [6984].
Quality control by DNA sequences: 16S rRNA gene (AB621358).
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 06217.
Fee category: Domestic, A or C; Overseas, A or C.
Bifidobacterium gallicum
JCM number: 8224 <-- DSM 20093 <-- H. Beerens P6.
Source: Human feces [2925].
Morphology: [2925].
Biochemistry/Physiology: [2925].
Cell wall: Lys-Ala-Ser [2925].
G+C (mol%): 61 [2925].
DNA-DNA relatedness: [2925].
Phylogeny: 16S rRNA gene (D86189, GU361820).
Genome sequence: ABXB00000000.
Quality control by DNA sequences: 16S rRNA gene (AB507097).
Publication(s) using this strain [A04190, A06239, A09026, A09198, A10101, A10294]
Fee category: Domestic, A or C; Overseas, A or C.
Corynebacterium accolens
JCM number: 8331 <-- CNCTC Th 1/57.
Source: Cervix [2982].
Morphology: [2982].
Biochemistry/Physiology: [2982].
Cell wall: meso-A2pm; Ara, Gal [2982].
G+C (mol%): 58.2 (PC) [2982].
Phylogeny: 16S rRNA gene (AJ439346, X80500).
Genome sequence: ACGD00000000.
Fee category: Domestic, A or C; Overseas, A or C.
Pyrococcus furiosus
JCM number: 8422 <-- DSM 3638 <-- K. O. Stetter and G. Fiala Vc 1.
Source: Hot sediment at the beach of Porto di Levante, Vulcano Island, Italy [3007].
Morphology: [3007].
Biochemistry/Physiology: [3007].
Polar lipid: [4229].
G+C (mol%): 38.3 (Tm), 37.1 (HPLC) [3007].
DNA-DNA relatedness: [3007,3394].
Phylogeny: 16S rRNA gene (AB603518).
Other taxonomic data: Polyamine [3632].
Genome sequence: AE009950 [5319].
More information: Preservation [3717].
Quality control by DNA sequences: 16S rRNA gene (AB603518).
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 08523.
Publication(s) using this strain [A04193, A08175]
Fee category: Domestic, B; Overseas, B.
Porphyromonas endodontalis
JCM number: 8526 <-- Tokyo Med. Dent. Univ. <-- ATCC 35406 <-- T. J. M. van Steenbergen HG 370.
Source: Infected root canal.
Fatty acid: [3124,3521].
G+C (mol%): 49.6 (Tm) [3110].
DNA-DNA relatedness: [3110].
Phylogeny: 16S rRNA gene (AB547659, L16491) [3513], hsp60 (AB547580) [8355].
Other taxonomic data: Serum agglutination [3112]; Protein profile [3110].
Genome sequence: ACNN00000000.
Quality control by DNA sequences: 16S rRNA gene (AB547659), hsp60 (AB547580).
Publication(s) using this strain [A04177, A10221]
Fee category: Domestic, A or C; Overseas, A or C.
Fusobacterium nucleatum subsp. nucleatum
JCM number: 8532 <-- Tokyo Med. Dent. Univ. <-- Tama Biochem. Co., Ltd. <-- ATCC 25586 <-- W. E. C. Moore VPI 4355 <-- A. Prévot 1210.
Source: Cervico-facial lesion.
Fatty acid: [3521].
DNA-DNA relatedness: [3158].
Phylogeny: 16S rRNA gene (AB573068).
Other taxonomic data: Protein profile [3158].
Genome sequence: AE009951 [8222].
Quality control by DNA sequences: 16S rRNA gene (AB573068).
Publication(s) using this strain [A07170, A08218, A08244, A10271, A10295, A10297, A10303, A10305]
Fee category: Domestic, A or C; Overseas, A or C.
Campylobacter gracilis
JCM number: 8538 <-- ATCC 33236 <-- A. C. R. Tanner FDC 1084.
Source: Human gingival sulcus.
Biochemistry/Physiology: [2767].
Serology: [2768].
G+C (mol%): 45.0 [2768].
DNA-DNA relatedness: [2767].
Phylogeny: 16S rRNA gene (DQ174168).
Other taxonomic data: Ultrastructure [2769].
Genome sequence: ACYG00000000.
Publication(s) using this strain [A09186]
Fee category: Domestic, A or C; Overseas, A or C.
Selenomonas flueggei
JCM number: 8544 <-- ATCC 43531 <-- L. V. H. Moore VPI E4M-28B.
Source: Gingival crevice of a person in an experimental gingivitis trial [3118].
Biochemistry/Physiology: [2987].
Fatty acid: [2987,3521].
G+C (mol%): 56.0 (Tm) [2987].
DNA-DNA relatedness: [2987].
Phylogeny: 16S rRNA gene (AB643464, AF287803).
Other taxonomic data: Protein profile [2987].
Genome sequence: ACLA00000000.
Quality control by DNA sequences: 16S rRNA gene (AB643464).
Publication(s) using this strain [A12296]
Fee category: Domestic, A or C; Overseas, A or C.
Selenomonas noxia
JCM number: 8546 <-- ATCC 43541 <-- L. V. H. Moore VPI D9B-5.
Source: Gingival crevice of an affected site in a person with rapidly progressive periodontitis [3119].
Biochemistry/Physiology: [2987].
Fatty acid: [2987,3521].
G+C (mol%): 57.0 (Tm) [2987].
DNA-DNA relatedness: [2987].
Phylogeny: 16S rRNA gene (AF287799).
Other taxonomic data: Protein profile [2987].
Genome sequence: ACKT00000000.
Publication(s) using this strain [A12296]
Fee category: Domestic, A or C; Overseas, A or C.
Thermococcus litoralis
JCM number: 8560 <-- DSM 5473 <-- A. Neuner <-- K. O. Stetter <-- S. Belkin and H. W. Jannasch NS-C.
Source: Shallow submarine hot spring near Lucrino, the Bay of Naples, Italy [3180].
Morphology: [3180].
Biochemistry/Physiology: [3145,3180].
G+C (mol%): 38 [3145], 39.1 (Tm) [3180].
DNA-DNA relatedness: [3145].
Phylogeny: 16S rRNA gene (FR749899).
Other taxonomic data: Polyamine [3632].
Genome sequence: AHVB00000000 [9050].
Quality control by DNA sequences: 16S rRNA gene (AB603515).
Publication(s) using this strain [A04193, A07262]
Fee category: Domestic, B; Overseas, B.
Natronomonas pharaonis
JCM number: 8858 <-- IFO 14720 <-- DSM 2160 <-- H. G. Trüper strain Gabara.
Source: Alkaline brines of eutrophic desert lakes of Wadi Natrun, Egypt [3294].
Biochemistry/Physiology: [3293,3294].
Polar lipid: [3293,3627].
G+C (mol%): Major DNA, 61.2: minor DNA, 51.9 (Bd) [3293], 64.3 (Tm) [3294], 62.6 (Tm) [3637,3639].
DNA-DNA relatedness: [3637,3639].
Phylogeny: 16S rRNA gene (D87971) [4247].
Other taxonomic data: Polyamine [3757,3796].
Taxonomy: [3293,4247].
Genome sequence: CR936257 [6170].
More information: Preservation [3716].
Publication(s) using this strain [A08243, A11179]
Fee category: Domestic, A or C; Overseas, A or C.
Natrialba magadii
JCM number: 8861 <-- NCIMB 2190 <-- W. D. Grant <-- B. J. Tindall MS3.
Source: Lake Magadi, Kenya [3293].
Morphology: [3293,4247].
Biochemistry/Physiology: [3293,3367].
Quinone: MK-8, MK-8(H2) [2070].
Polar lipid: [3293,3623,3627].
G+C (mol%): Major DNA, 63: minor DNA, 49.7 (Bd) [3293].
DNA-DNA relatedness: [3367].
Phylogeny: 5S, 16S and 23S rRNA gene (X72495) [3646,3702].
Other taxonomic data: Polyamine [3757,3796].
Genome sequence: CP001932.
Publication(s) using this strain [A10175]
Fee category: Domestic, A or C; Overseas, A or C.
Haloferax mediterranei
JCM number: 8866 <-- IFO 14739 <-- ATCC 33500 <-- F. Rodoriguez-Valera R-4.
Source: Salt pond near Alicante, Spain [3830].
Morphology: [3288,3830].
Biochemistry/Physiology: [3288,3830].
Numerical taxonomy: [3282].
Quinone: MK-8 [3630].
Polar lipid: [3282,3624,3630].
Serology: [3638].
G+C (mol%): 60 (UV) [3288], 62.2 (Bd) [3366], 59.1 (Tm) [3637,3639].
DNA-DNA relatedness: [3366,3637,3639,3644].
Phylogeny: 5S rRNA (X14441) [3973], 16S rRNA gene (D11107, S39859, S76923) [3712,3906,3982,8352], rpoB' (AB477167) [8352].
Other taxonomic data: Genome fingerprint [3648]; Polyamine [3756,3796]; Sensitivity to antibiotics [3649,3965]; Sensitivity of ribosome to antibiotics [3641].
Taxonomy: [3282].
Genome sequence: (CP001868, CP001869, CP001870, CP001871) [9133].
More information: Preservation [3716].
Publication(s) using this strain [A05046, B07135, B08147, A10175]
Fee category: Domestic, A or C; Overseas, A or C.
Acidiphilium multivorum
JCM number: 8867 <-- N. Wakao AIU 301.
Source: Acid mine drainage at the abandoned Matsuo sulfur-pyrite mine, Iwate, Japan [3573].
Biochemistry/Physiology: [3573].
Fatty acid: n-C18:1 [3573].
Quinone: Q-10 [3573].
G+C (mol%): 67.6 (HPLC) [3573].
DNA-DNA relatedness: [3573].
Phylogeny: 16S rRNA gene (AB006711).
Genome sequence: AP012035.
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 08012.
Publication(s) using this strain [A07185, A07281]
Fee category: Domestic, A or C; Overseas, A or C.
Haloferax volcanii
JCM number: 8879 <-- NCIMB 2012 <-- H. Larsen DS2.
Source: Sediment from the Dead Sea [3287].
Biochemistry/Physiology: [3287].
Numerical taxonomy: [3282].
Quinone: MK-8, MK-8(H2) [2070].
Polar lipid: [3282].
Serology: [3638].
G+C (mol%): Major DNA, 66.5: minor DNA 55.3 (Bd) [3293], 63.4 (Tm) [3287], 64.9 (Tm) [3637,3639].
DNA-DNA relatedness: [3366,3637,3644].
Phylogeny: 5S rRNA gene (X02127, X02128) [3978], 5S rRNA (X02129) [3978], 16S rRNA gene (S76922) [3982,8352], 16S rRNA (K00421) [3931], rpoB' (AB477170) [8352].
Other taxonomic data: Polyamine [3796]; Sensitivity to antibiotics [3649].
Taxonomy: [3282].
Genome sequence: CP001956, plasmids pHV3 (CP001953), pHV2 (CP001954), pHV4 (CP001955), pHV1 (CP001957) [8435].
More information: Preservation [3716].
Publication(s) using this strain [A05182, B07135, B08147, A10175, B11215, A12159]
Fee category: Domestic, A or C; Overseas, A or C.
Halorubrum lacusprofundi
JCM number: 8891 <-- ATCC 49239 <-- C. A. Mancuso ACAM 34.
Source: Diphasic water-sediment sample from the Deep Lake in Antarctica [3280].
Biochemistry/Physiology: [3280].
Quinone: MK-8, MK-8(H2) [4406].
Polar lipid: [3280,4057].
G+C (mol%): Major DNA, 65.8: minor DNA, 54.8 (Bd) [3280].
Phylogeny: 16S rRNA catalog [3280], 16S rRNA gene (X82170, U17365) [4057,4058,8352], rpoB' (AB477181) [8352].
Other taxonomic data: Polyamine [3796].
Taxonomy: [4058].
Genome sequence: CP001365.
Publication(s) using this strain [B04087, B06083, B06095, A10175]
Fee category: Domestic, B; Overseas, B.
Haloarcula hispanica
JCM number: 8911 <-- IAM 13179 <-- F. Rodriguez-Valera Y27.
Source: Solar saltern near Alicante, Spain [3281].
Biochemistry/Physiology: [3281].
Numerical taxonomy: [3282].
Quinone: MK-8 [3630].
Polar lipid: [3282,3630].
G+C (mol%): 62.7 (Tm) [3281], 61.8 (Tm) [3637,3639].
DNA-DNA relatedness: [3637,3639,3644].
Phylogeny: 16S rRNA gene (EF645682, EF645683) [7681,8352], rpoB' (AB477145) [8352].
Other taxonomic data: Polyamine [3796]; Sensitivity to antibiotics [3649].
Genome sequence: CP002921 (chromosome I), CP002922 (chromosome II), plasmid pHH400 (CP002923) [8819].
Publication(s) using this strain [A10175, B11138]
Fee category: Domestic, A or C; Overseas, A or C.
Sulfolobus acidocaldarius
JCM number: 8929 <-- DSM 639 <-- T. D. Brock 98-3.
Source: Locomotive Spring in Yellowstone National Park, WY, USA [3318].
Morphology: [3318,3319].
Biochemistry/Physiology: [3318,3679,3792].
Quinone: Caldariellaquinone [3691].
Polar lipid: [3680,3792,3950,4229].
G+C (mol%): 41 (Bd), 37 (Tm), 39 (HPLC) [3319], 39.9 (Bd) [3660].
DNA-DNA relatedness: [3320,3322,3323,3496,3497,3660,3698,3700].
Phylogeny: 5S rRNA [3697], 5S rRNA gene (U05019) [3666], 16S rRNA gene (D14876, D14053) [3755,4080], 23S rRNA gene (U32320) [4111], elongation factor 1α (X52382) [3981], Elongation factor-2 [3869].
Other taxonomic data: DNA-dependent RNA polymerase [3319,3696,3811,3812]; Polyamine [3632,3756]; S-layer component profile [3679]; Whole-cell protein profile [3792].
Genome sequence: CP000077 [6051].
More information: Identity of the strain [3678]; Preservation [3716]; S-layer [3758].
Publication(s) using this strain [A04042, A04046, A04221, A06021]
Fee category: Domestic, A or C; Overseas, A or C.
Haloarcula marismortui
JCM number: 8966 <-- ATCC 43049 <-- L. Hochstein <-- B. J. Tindall <-- M. Ginzburg.
Source: Water from the Dead Sea [3365].
Phylogeny: 16S rRNA gene (AB355987, EF645692, EF645693) [4857,7681,8352], rpoB' [8352].
Other taxonomic data: Polyamine [3796]; Sensitivity to antibiotics [3649].
Taxonomy: [3284].
Genome sequence: AY596297 (chromosome I), AY596298 (chromosome II) [5811].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 08120.
Publication(s) using this strain [A04036, B11138]
Fee category: Domestic, A or C; Overseas, A or C.
Thermoplasma acidophilum
JCM number: 9062 <-- IFO 15155 <-- T. Itoh <-- ATCC 25905 <-- R. G. Wittler <-- T. D. Brock <-- G. Darland 122-1B2.
Source: Coal refuse pile [3373].
Biochemistry/Physiology: [3373,3650,3661].
Quinone: MK-7 [3689], MMK-7 [3690], MK-7, MMK-7 [3691].
G+C (mol%): 46 (Tm), 45 (HPLC) [3650], 45.0 (Bd) [3660], 46.9 (Bd) [3674], 46.8 (TLC) [3675].
DNA-DNA relatedness: [3650,3660,3698,3700].
Phylogeny: 5S, 16S and 23S rRNA gene [3907], 5S rRNA gene (M32297, X02709) [3975], 16S rRNA gene (M38637) [3905], 23S rRNA gene (M32298) [3687], elongation factor-1α (X53866) [3867], elongation factor-2 (X56840) [3868].
Other taxonomic data: DNA-dependent RNA polymerase [3811]; Polyamine [3632,5609]; Sensitivity of ribosome to antibiotics [3699,3764].
Taxonomy: [3650].
Genome sequence: AL139299 [4949].
More information: Fermenter cultivation [3866]; Preservation [3716].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 08521.
Publication(s) using this strain [A06199, A12082]
Fee category: Domestic, A or C; Overseas, A or C.
Haloterrigena turkmenica
JCM number: 9101 <-- VKM B-1734 <-- I. S. Zvyagintseva 4k.
Source: Salt soil crust in Ashkhabad, USSR [3395].
Morphology: [3643].
Biochemistry/Physiology: [3395].
Polar lipid: [4556].
G+C (mol%): 59.8 (Tm) [4556].
DNA-DNA relatedness: [4556,4742].
Phylogeny: 16S rRNA gene (AB004878) [4556].
Other taxonomic data: Polyamine [4558].
Taxonomy: [4556].
Genome sequence: CP001860.
Publication(s) using this strain [B05125, B07134, B10129, A10175, A12159]
Fee category: Domestic, A or C; Overseas, A or C.
Bacillus halodurans
JCM number: 9153 <-- K. Horikoshi C-125.
Source: Soil [3422].
Biochemistry/Physiology: [3422,4591].
Cell wall: [3433,3434,3437,3440].
DNA-DNA relatedness: [4591,4686].
Phylogeny: 16S rRNA gene [4591], 16S rRNA gene (AB598741).
Taxonomy: [4591].
Genome sequence: BA000004 [4966,8187].
Quality control by DNA sequences: 16S rRNA gene (AB598741).
Production: β-galactosidase [3422,3424,3451] and xylanase [3438,3447].
Publication(s) using this strain [A04050, A04158, A04189, A05038, A05057, A07217, A07250, A07252, A08219]
Fee category: Domestic, A or C; Overseas, A or C.
Bacillus cellulosilyticus
JCM number: 9156 <-- K. Horikoshi N-4.
Source: Soil [3436].
Biochemistry/Physiology: [3436,6199].
Fatty acid: [6199].
Quinone: MK-7 [6199].
G+C (mol%): 36.1 [3059], 39.6 (HPLC) [6199].
DNA-DNA relatedness: [3059,6199].
Phylogeny: 16S rRNA gene (AB043852) [6199].
Genome sequence: CP002394.
Production: cellulase [3436].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 08102.
Publication(s) using this strain [A04031, C05116, B08034, A11055]
Fee category: Domestic, A or C; Overseas, A or C.
Metallosphaera sedula
JCM number: 9185 <-- DSM 5348 <-- K. O. Stetter and G. Huber TH2.
Source: Hot water pond at Pisciarelli Solfatara, near Naples, Italy [3496].
Morphology: [3496].
Biochemistry/Physiology: [3496,3800].
Quinone: Caldariellaquinone [3496,3683].
Polar lipid: [3683,3792].
G+C (mol%): 44.6 (Tm), 46.7 (HPLC) [3496], 45 (Tm), 47 (HPLC) [3497].
DNA-DNA relatedness: [3496,3497].
Phylogeny: 16S rRNA gene (D26490, X90481) [3793,4110].
Other taxonomic data: DNA-dependent RNA polymerase [3496]; Genome size [4330]; Polyamine [3632]; Sensitivity of ribosome to antibiotics [3701]; Whole-cell protein profile [3792].
Genome sequence: CP000682.
More information: Ore leaching capacity [3496].
Publication(s) using this strain [A06021, A09212]
Fee category: Domestic, A or C; Overseas, A or C.
Desulfurococcus mucosus
JCM number: 9187 <-- DSM 2162 <-- W. Zillig O7/1.
Source: Acidic hot spring in Askja, Iceland [3492].
Morphology: [3492].
Biochemistry/Physiology: [3492].
G+C (mol%): 51.3 (Tm), 52.9 (HPLC) [3492].
DNA-DNA relatedness: [3698].
Other taxonomic data: DNA-dependent RNA polymerase [3492,3811]; Polyamine [4098].
Genome sequence: CP002363 [8753].
Publication(s) using this strain [A09212]
Fee category: Domestic, B; Overseas, B.
Moorella thermoacetica
JCM number: 9320 <-- E. Uematsu <-- ATCC 39073 <-- L. G. Ljungdahl <-- H. G. Wood.
Phylogeny: 16S rRNA gene (AB540984).
Genome sequence: CP000232.
Quality control by DNA sequences: 16S rRNA gene (AB540984).
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 07572, JGD 07562.
Publication(s) using this strain [A06029]
Fee category: Domestic, A or C; Overseas, A or C.
Clostridium thermocellum
JCM number: 9322 <-- E. Uematsu <-- ATCC 27405 <-- L. DS. Smith VPI 7372 <-- J. Alexander <-- R. McBee.
G+C (mol%): 38.0 (Tm) [4036].
Phylogeny: 16S rRNA gene (AB558166, L09173) [4036].
Genome sequence: CP000568.
More information: Utilization of cellulose and xylan [4036].
Quality control by DNA sequences: 16S rRNA gene (AB558166).
Production: cellulase [4004,4010].
  
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Fee category: Domestic, A or C; Overseas, A or C.
Clostridium thermocellum
JCM number: 9323 <-- E. Uematsu <-- ATCC 35609 <-- J. G. Zeikus LQR1.
Source: Laboratory contamination.
Phylogeny: 16S rRNA gene (AB588017).
Genome sequence: ACVX00000000 [8701].
Quality control by DNA sequences: 16S rRNA gene (AB588017).
Production: ethanol from cellulose [4009].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 06239.
Publication(s) using this strain [A06011]
Fee category: Domestic, A or C; Overseas, A or C.
Saccharopolyspora spinosa
JCM number: 9375 <-- NRRL 18395 <-- F. P. Mertz A83543.1.
Source: Soil from a sugar mill rum still, the Virgin Islands, USA [3501].
Biochemistry/Physiology: [3501].
Cell wall: meso-A2pm; Ara, Gal [3501]; cell wall sugars [3312].
Fatty acid: [3501].
Quinone: MK-9(H4), MK-9(H6) [3501].
Polar lipid: Type PIII [3501].
Phylogeny: 16S rRNA gene (AF002818).
Genome sequence: AEYC00000000 [8954].
Production: spinosyns [8301].
Publication(s) using this strain [A10150]
Fee category: Domestic, A or C; Overseas, A or C.
Microlunatus phosphovorus
JCM number: 9379 <-- K. Nakamura NM-1.
Source: Activated sludge grown on diluted corn steep liquor, Japan [3847].
Biochemistry/Physiology: [3831].
Cell wall: LL-A2pm [3831].
Fatty acid: a-C15:0, i-C15:0, i-C16:0 [3831].
Quinone: MK-9(H4) [3831].
G+C (mol%): 67.9 (HPLC) [3831].
Phylogeny: 16S rRNA gene (D26169, Z78207) [3831,5213], RNase P RNA gene (AF110053) [4865].
Other taxonomic data: Polyamine [4623].
Genome sequence: AP012204.
More information: Accumulates polyphosphate [3831,3847].
Publication(s) using this strain [A04007, A06039]
Fee category: Domestic, A or C; Overseas, A or C.
Corynebacterium jeikeium
JCM number: 9384 <-- NCTC 11913 <-- D. Pitcher A376/84 <-- R. E. Weaver.
Source: Blood [3569].
Biochemistry/Physiology: [3569].
Cell wall: meso-A2pm; Ara, Gal [3569].
Fatty acid: C18:0 [3569].
G+C (mol%): 60.1 (Tm) [3569].
DNA-DNA relatedness: [3569,3849].
Phylogeny: 16S rRNA gene (U87823, X82062, X84250) [3956,3961].
Other taxonomic data: Protein profile [3569,3926]; Mycolic acid [3569]; Antimicrobial susceptibilities [3849].
Genome sequence: ACYW00000000.
Publication(s) using this strain [A05184]
Fee category: Domestic, A or C; Overseas, A or C.
Corynebacterium matruchotii
JCM number: 9386 <-- NCTC 10254 <-- M. N. Gilmour.
Source: Oral calculus.
Biochemistry/Physiology: [3566,3569].
Cell wall: meso-A2pm; Ara, Gal [3566].
Fatty acid: C16:0, C18:1 [426,3566].
Quinone: MK-8(H2), MK-9(H2) [3566].
Polar lipid: DPG, PG, PI, PIDM, GL [3566].
G+C (mol%): 56.0 (Tm) [3569,5453,9325].
DNA-DNA relatedness: [3569].
Phylogeny: 16S rRNA gene (X82065, X84443) [3956,3961].
Other taxonomic data: Mycolic acid [3923].
Genome sequence: ACSH00000000.
Publication(s) using this strain [A09157]
Fee category: Domestic, A or C; Overseas, A or C.
Corynebacterium striatum
JCM number: 9390 <-- NCTC 764 <-- F. C. Minnett.
Biochemistry/Physiology: [3569].
G+C (mol%): 57.6 (Tm) [3569,5453], 61 (HPLC) [5439].
DNA-DNA relatedness: [3569].
Phylogeny: 16S rRNA gene (X81910, X84442) [3956,3961].
Other taxonomic data: Protein profile [3569].
Genome sequence: ACGE00000000.
Fee category: Domestic, A or C; Overseas, A or C.
Hyperthermus butylicus
JCM number: 9403 <-- DSM 5456 <-- W. Zillig PLM1-5.
Source: Solfataric sea floor on the beach of the São Miguel Island, Azores [3576].
Morphology: [3576,3577].
Biochemistry/Physiology: [3576,3577].
G+C (mol%): 55.6 [3576,3577].
DNA-DNA relatedness: [3576].
Phylogeny: 16S rRNA gene (X99553) [4246].
Genome sequence: CP000493 [6866].
More information: DNA-dependent RNA polymerase [3576]; Polyamine [4098].
Publication(s) using this strain [A06021, A09212]
Fee category: Domestic, B; Overseas, B.
Staphylothermus marinus
JCM number: 9404 <-- DSM 3639 <-- K. O. Stetter and G. Fiala F1.
Source: Geothermally heated sea floor at Vulcano, Italy [3575].
Morphology: [3575].
Biochemistry/Physiology: [3575].
G+C (mol%): 34.9 (Tm), 35.3 (HPLC) [3575].
DNA-DNA relatedness: [3575].
Phylogeny: 16S rRNA gene (X99560) [4246].
Other taxonomic data: Polyamine [4098].
Genome sequence: CP000575 [8329].
Publication(s) using this strain [A06021, A09212]
Fee category: Domestic, B; Overseas, B.
Halobacterium salinarum
JCM number: 9409 <-- NCIMB 2080 <-- ATCC 29341 <-- L. I. Hochstein R-1 <-- L. Briggs.
Quinone: MK-8, MK-8(H2) [2070].
DNA-DNA relatedness: [3644,3698].
Phylogeny: 5S rRNA gene [3767], 16S rRNA gene (M11583) [3767,3904], 23S rRNA gene [3767].
Other taxonomic data: DNA-dependent RNA polymerase [3696,3812]; Polyamine [4558].
Genome sequence: AM774415 [8432].
More information: Mutant of NRL strain of Halobacterium halobium [3640].
Publication(s) using this strain [A12175]
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides stercoris
JCM number: 9496 <-- ATCC 43183 <-- L. V. Moore VPI B5-21 <-- W. E. C. Moore.
Source: Human feces [3605].
Biochemistry/Physiology: [3605,6525].
Fatty acid: [3521,6525].
Quinone: MK-10, MK-11 [6525].
Enzyme electrophoretic profile: [3863].
G+C (mol%): 46 (Tm) [3605], 46.3 (HPLC) [6525].
DNA-DNA relatedness: [3605].
Phylogeny: 16S rRNA gene (AB510708) [8440,8884], dnaJ (AB619890) [8884], gyrB (AB619928) [8884], hsp60 (AB510689) [8355,8440,8884], recA (AB619966) [8884], rpoB (AB620004) [8884].
Genome sequence: ABFZ00000000.
More information: Association with Japanese cedar pollinosis [7496].
Quality control by DNA sequences: 16S rRNA gene (AB510708), dnaJ (AB619890), gyrB (AB619928), hsp60 (AB510689) [8355,8440], recA (AB619966), rpoB (AB620004).
Publication(s) using this strain [A04177, B06146, A07171, A07269, A08012, A10209, A10221, A11289]
Fee category: Domestic, A or C; Overseas, A or C.
Parabacteroides merdae
JCM number: 9497 <-- ATCC 43184 <-- L. V. Moore VPI T4-1 <-- W. E. C. Moore.
Source: Human feces [3605].
Biochemistry/Physiology: [3605,6399].
Fatty acid: [3521,6399].
Quinone: MK-9, MK-10 [6399].
Enzyme electrophoretic profile: [3863].
G+C (mol%): 44 (Tm) [3605].
DNA-DNA relatedness: [3605].
Phylogeny: 16S rRNA gene (AB238928) [6399], hsp60 (AB547570) [8355].
Genome sequence: AAXE00000000.
Quality control by DNA sequences: 16S rRNA gene (AB238928), hsp60 (AB547570).
Publication(s) using this strain [A04177, B06080, B07123, A07171, A08007, A08012, A08170, A10221, B12203]
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides caccae
JCM number: 9498 <-- ATCC 43185 <-- L. V. Holdeman VPI 3452A.
Source: Human feces [3605].
Biochemistry/Physiology: [3605].
Fatty acid: [3521].
Enzyme electrophoretic profile: [3863].
G+C (mol%): 40 (Tm) [3605].
DNA-DNA relatedness: [3605].
Phylogeny: 16S rRNA gene (AB510697) [8440,8884], dnaJ (AB619861) [8884], gyrB (AB619899) [8884], hsp60 (AB510669) [8355,8440,8884], recA (AB619937) [8884], rpoB (AB619975) [8884].
Genome sequence: AAVM00000000.
More information: Association with Japanese cedar pollinosis [7496].
Quality control by DNA sequences: 16S rRNA gene (AB510697), dnaJ (AB619861), gyrB (AB619899), hsp60 (AB510669), recA (AB619937), rpoB (AB619975).
Publication(s) using this strain [A04177, A07171, A07269, A08007, A08012, A10209, A10221, A11280, A11289, B12117]
Fee category: Domestic, A or C; Overseas, A or C.
Lactobacillus vaginalis
JCM number: 9505 <-- NCTC 12197 <-- T. M. Embley Lac 19 <-- W. Bossart.
Source: Vagina of patients suffering from trichomonaiasis [2830].
Biochemistry/Physiology: [2830].
Fatty acid: [2830].
G+C (mol%): 39 (Tm) [2830].
DNA-DNA relatedness: [2830].
Phylogeny: 16S rRNA (X61136) [2983], 16S rRNA gene (AF243177).
Genome sequence: ACGV00000000.
Quality control by DNA sequences: 16S rRNA gene (AB289311).
Publication(s) using this strain [A09007]
Fee category: Domestic, A or C; Overseas, A or C.
Nakamurella multipartita
JCM number: 9543 <-- K. Nakamura Y-104.
Source: Activated sludge acclimated with sugar-containing synthetic wastewater [4078].
Biochemistry/Physiology: [4078,9197].
Cell wall: meso-A2pm [4078,9197]; N-acetyl Mur [9197]; Glc, Man, Xyl, Rib, Rha [9197].
Fatty acid: i-C16:0, i-C15:0, n-C18:1 [4078,9197].
Quinone: MK-8(H4) [4078,9197].
Polar lipid: DPG, PE, PI [9197].
G+C (mol%): 67.5 (HPLC) [4078], 69.9 (HPLC) [9197].
Phylogeny: 16S rRNA gene (D50066, Y08541) [4078].
Taxonomy: Nomenclature [5691].
Genome sequence: CP001737 [8218].
Publication(s) using this strain [A04007]
Fee category: Domestic, A or C; Overseas, A or C.
Thermoplasma volcanium
JCM number: 9571 <-- IFO 15438 <-- DSM 4299 <-- A. Segerer and K. O. Stetter GSS1.
Source: Solfatara, Vulcano, Porto di Levante, Italy [3650].
Morphology: [3650].
Biochemistry/Physiology: [3650].
G+C (mol%): 38 (Tm, HPLC) [3650].
DNA-DNA relatedness: [3650].
Phylogeny: 16S rRNA gene (AF339746, AJ299215).
Other taxonomic data: Polyamine [3632,5609].
Genome sequence: BA000011 [4950].
Publication(s) using this strain [A04192]
Fee category: Domestic, A or C; Overseas, A or C.
Archaeoglobus fulgidus
JCM number: 9628 <-- DSM 4304 <-- K. O. Stetter VC-16.
Source: Hot sediments of marine hydrothermal system, Vulcano, Italy [3718].
Morphology: [3718].
Biochemistry/Physiology: [3718].
Quinone: MK-7(H14) [3725].
Polar lipid: [3683,3720].
G+C (mol%): 46 (Tm) [3718,3719,3720].
DNA-DNA relatedness: [3720].
Phylogeny: 16S rRNA gene (Y00275) [3726], 16S rRNA (X05567) [3727], 23S rRNA (M64487) [3727].
Other taxonomic data: 7S RNA gene (X17237) [3979]; DNA-dependent RNA polymerase [3718]; Genome size [4330]; Polyamine [4204].
Genome sequence: AE000782 [4361].
Fee category: Domestic, B; Overseas, B.
Archaeoglobus profundus
JCM number: 9629 <-- DSM 5631 <-- K. O. Stetter and S. Burggraf AV18.
Source: Deep sea hydrothermal system at Guaymas, Mexico [3720].
Morphology: [3720].
Biochemistry/Physiology: [3720].
Polar lipid: [3683,3720].
G+C (mol%): 41 (Tm) [3720].
DNA-DNA relatedness: [3720].
Phylogeny: 16S rRNA gene & ITS1 & 23S rRNA gene (AJ299219).
Other taxonomic data: Genome size [4330]; Polyamine [4204].
Genome sequence: CP001857, plasmid pArcpr01 (CP001858) [8334].
Publication(s) using this strain [A09250]
Fee category: Domestic, B; Overseas, B.
Pyrobaculum aerophilum
JCM number: 9630 <-- DSM 7523 <-- K. O. Stetter and P. Völkl IM2.
Source: Boiling marine water hole at the Maronti Beach, Ischia, Italy [3721].
Morphology: [3721].
Biochemistry/Physiology: [3721].
Polar lipid: [3721].
G+C (mol%): 52 (Tm, HPLC) [3721].
Phylogeny: 16S rRNA gene (L07510) [3721,3722].
Other taxonomic data: Genome size [4330]; Polyamine [4204].
Genome sequence: AE009441 [5196].
More information: Genomic map [4245].
Publication(s) using this strain [A06021, A09181, A09212]
Fee category: Domestic, B; Overseas, B.
Methanopyrus kandleri
JCM number: 9639 <-- DSM 6324 <-- K. O. Stetter and R. Huber AV19.
Source: Hydrothermally heated deep sea sediment at the Guaymas Basin, the Galf of California [3723].
Morphology: [3723].
Biochemistry/Physiology: [3723].
Polar lipid: [4229].
G+C (mol%): 59 (Tm), 60 (HPLC) [3723].
Phylogeny: 16S rRNA (M59932) [3724].
Other taxonomic data: Cell envelope [3723]; DNA-dependent RNA polymerase [3723]; Polyamine [4613].
Genome sequence: AE009439 [5183].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 07495.
Publication(s) using this strain [A08023, A09250]
Fee category: Domestic, B; Overseas, B.
Clavibacter michiganensis subsp. sepedonicus
JCM number: 9667 <-- ICMP 2535 <-- D. W. Dye CB5 <-- ICPB CS101 <-- H. N. Racicot C1.
Source: Potato (Solanum tuberosum), Canada.
Biochemistry/Physiology: [1093].
Cell wall: A2bu [1093]; sugars (Gal, Man, Rha) [1093]; D- and L-A2bu [4358].
Quinone: MK-9 [4358].
Phylogeny: 16S rRNA gene (AM410694, U09764) [5925,9310], gyrB (AM410848), rpoB (AM410874), recA (AM410822), ppk (AM410796) [9310].
Genome sequence: AM849034 [8488].
More information: Causes ringrot of tuber.
Fee category: Domestic, A or C; Overseas, A or C.
Halomicrobium mukohataei
JCM number: 9738 <-- K. Ihara arg-2.
Source: Salinas Grandes in the Andes highlands, Jujuy, Argentina [4059].
Morphology: [5303].
Biochemistry/Physiology: [4184].
Polar lipid: [4184,5303].
G+C (mol%): 65 (Tm) [4184].
DNA-DNA relatedness: [4184].
Phylogeny: 16S rRNA gene (D50850, EF645690, EF645691) [4184,5303,7681,8352], rpoB' (AB477172) [8352].
Other taxonomic data: Polyamine [4558].
Taxonomy: [5303].
Genome sequence: CP001688 [8330].
More information: Cruxrhodopsin-2 [4060].
Publication(s) using this strain [A09023, B10129, A10175, B12083, B12122, A12159, B12351]
Fee category: Domestic, A or C; Overseas, A or C.
Aeropyrum pernix
JCM number: 9820 <-- N. Nomura K1.
Source: Coastal solfataric vent at Kodakara-Jima Island, Japan [4152].
Biochemistry/Physiology: [4152].
Quinone: DMK-6(Hn), MTK-6(Hn) [4605].
Polar lipid: [4152].
G+C (mol%): 67 (HPLC) [4152].
Phylogeny: 16S rRNA gene (D83259) [4152], 16S and 23S rRNA gene (AB008745) [4362], 23S rRNA (AB004787).
Other taxonomic data: Polyamine [4464].
Genome sequence: BA000002 [4603,4604].
More information: Intron [4362]; Serine proteinase [4550].
Publication(s) using this strain [A04022, A04216, C05040, A06021, A07194, A07265, A09177, A09212, A10236, A10238, A10310, A10311, A11047, A11230, A11302, A12002, A12052, A12314]
Fee category: Domestic, A or C; Overseas, A or C.
Weissella paramesenteroides
JCM number: 9890 <-- NRIC 1542 <-- ATCC 33313 <-- NCDO 803 <-- C. S. Pederson R80.
Biochemistry/Physiology: [3774,3808].
Cell wall: Lys-Ala2, Lys-Ser-Ala2 [3808].
Fatty acid: [4517].
G+C (mol%): 39.3 (Tm) [3774].
DNA-DNA relatedness: [3774].
Phylogeny: 16S rRNA gene (AB023238, X95982) [3808].
Genome sequence: ACKU00000000.
Publication(s) using this strain [A07006, A11021, A12315]
Fee category: Domestic, A or C; Overseas, A or C.
Pyrococcus horikoshii
JCM number: 9974 <-- C. Kato <-- F. Robb OT-3.
Source: Hydrothermal vent at the Okinawa Trough [4331].
Phylogeny: 16S rRNA gene (AY099169).
Other taxonomic data: Polyamine [4613].
Taxonomy: Designation as the type strain [4741].
Genome sequence: BA000001 [4503,4504].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 05990.
Publication(s) using this strain [A04061, A04193, A05047, A05169, A05173, A05225, A08205, A08242, A09236]
Fee category: Domestic, B; Overseas, B.
Eggerthella lenta
JCM number: 9979 <-- STAFF 1026 <-- ATCC 25559 <-- W. E. C. Moore VPI 0255 <-- A. Prévot 1899B.
Source: Rectal tumor [4450].
Biochemistry/Physiology: [4450].
Cell wall: [4641].
Fatty acid: [4430].
Enzyme electrophoretic profile: [4430].
Phylogeny: 16S rRNA gene (AB011817, AB558167, AF292375) [4641].
Taxonomy: [4450,7712].
Genome sequence: CP001726 [8225].
More information: PCR primer set [4641].
Quality control by DNA sequences: 16S rRNA gene (AB558167).
Publication(s) using this strain [A04007, A04184, B08036, A10249]
Fee category: Domestic, A or C; Overseas, A or C.
Methanothermobacter thermautotrophicus
JCM number: 10044 <-- DSM 1053 <-- J. G. Zeikus ΔH.
Source: Anaerobic sewage-sludge [4191].
Biochemistry/Physiology: [4191].
Serology: [4193,4691].
G+C (mol%): 49.7 (Bd) [4189], 52 (Bd) [4191], 50.7 (Tm) [4193].
DNA-DNA relatedness: [3698,4192,4193,6684].
Phylogeny: 16S rRNA catalog [4189], 5S rRNA (X62857) [4192], 16S rRNA gene (X68720) [4228].
Other taxonomic data: Phage typing [4691]; Polyamine [4464]; Whole-cell protein profile [4193].
Taxonomy: [4192,4691].
Genome sequence: AE000666 [4300].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 06276.
Publication(s) using this strain [A06207, A07197, A07262]
Fee category: Domestic, B; Overseas, B.
Methanocaldococcus jannaschii
JCM number: 10045 <-- DSM 2661 <-- J. A. Leigh and W. J. Jones JAL-1.
Source: Base of 'white smoker' chimney on the East Pacific Rise [4194].
Morphology: [4194].
Biochemistry/Physiology: [4194].
Polar lipid: [4557].
G+C (mol%): 31 (Bd) [4194].
Phylogeny: 16S rRNA catalog [4194], 16S rRNA (M59126).
Other taxonomic data: Polyamine [4464].
Taxonomy: [5327].
Genome sequence: L77117 [4306].
Quality control by DNA sequences: 16S rRNA gene (AB603516).
Publication(s) using this strain [B04082, A06028, A07262, A08023]
Fee category: Domestic, B; Overseas, B.
Picrophilus torridus
JCM number: 10055 <-- DSM 9790 <-- W. Zillig KAW2/3.
Source: Dry, hot soil in the vicinity of Kawayu, Hokkaido, Japan [4195].
Biochemistry/Physiology: [4195].
DNA typing: RFLP pattern [4195].
Other taxonomic data: Polyamine [4464].
Taxonomy: [4196].
Genome sequence: AE017261 [5712].
Publication(s) using this strain [A04192]
Fee category: Domestic, A or C; Overseas, A or C.
Thermotoga maritima
JCM number: 10099 <-- DSM 3109 <-- K. O. Stetter MSB8.
Source: Geothermally heated sea sediment, Porto di Levante, Vulcano, Italy [4100].
Cell wall: Mur, GlcNAc, D-Glu, (L & D)-Ala, (L & D)-Lys (0.4 : 0.7 : 1 : 1.4 : 0.9) [4100].
Fatty acid: C12 - C18 fatty acid (7%), long chain dicarboxylic fatty acids (10%) and unknown hydrophobic compounds (83%) [4100].
G+C (mol%): 46 (Tm) [4100].
Phylogeny: 16S rRNA (M21774), [3816].
Other taxonomic data: Polyamine [4464,5950].
Genome sequence: AE000512 [4644].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 07695.
Publication(s) using this strain [A04179, A04191, B05123, A06006, B07136, A07195, A08174]
Fee category: Domestic, B; Overseas, B.
Tsukamurella paurometabola
JCM number: 10117 <-- CIP 100753 <-- ATCC 8368 <-- E. A. Steinhaus.
Cell wall: N-Glycolyl Mur [2408].
Fatty acid: C16:0, C18:1, 10Me-C18:0 [426,3967].
Quinone: MK-9 [3967].
Polar lipid: DPG, PG, PE, PIDMs, GL [3967].
G+C (mol%): 66.6 (Tm) [5453].
Phylogeny: 16S rRNA gene (AF283280, X53206, X80628, Z46751) [2408,3760,3951,5083].
Other taxonomic data: Mycolic acid [3967].
Taxonomy: [2408,3182].
Genome sequence: CP001966 [8718].
Fee category: Domestic, A or C; Overseas, A or C.
Thermobispora bispora
JCM number: 10125 <-- IFO 14880 <-- S. Miyadoh <-- ATCC 19993 <-- A. Henssen R51.
Source: Decaying manure, Berlin, Germany [702].
Biochemistry/Physiology: [702,703].
Fatty acid: [2879].
Quinone: MK-9, MK-9(H2) [2879].
Polar lipid: Type PIV [2879].
G+C (mol%): 71 (Tm) [2879].
DNA-DNA relatedness: [2879].
Phylogeny: 16S rRNA gene (U58523) [4211], rRNA operons (U83909, U83910, U83911, U83912) [4737].
Taxonomy: [4211].
Genome sequence: CP001874 [8220].
More information: Two distinct types of rRNA operons [4737].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 08114.
Fee category: Domestic, A or C; Overseas, A or C.
Collinsella aerofaciens
JCM number: 10188 <-- T. Mitsuoka V-61 <-- Takeda Chem. Ind., Ltd. 1442 <-- ATCC 25986 <-- VPI 1003.
Source: Human feces [4448].
Biochemistry/Physiology: [4448], III-A [4615].
Cell wall: D-Glu-L-Orn-L-Asp [4615].
G+C (mol%): 61 (HPLC) [4615].
DNA-DNA relatedness: [4615].
Phylogeny: 16S rRNA gene (AB011816, AB616131) [4615].
Taxonomy: [4448].
Genome sequence: AAVN00000000.
Quality control by DNA sequences: 16S rRNA gene (AB616131).
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 07425.
Publication(s) using this strain [A04007, A04168, A04184, B08036, A10249, A11238, A12295]
Fee category: Domestic, A or C; Overseas, A or C.
Thermaerobacter marianensis
JCM number: 10246 <-- K. Takai 7p75a.
Source: Mud, the Mariana Trench Challenger Deep at a depth of 10,897 m [4570].
Biochemistry/Physiology: [4570].
Fatty acid: [4570].
G+C (mol%): 72.5 (HPLC) [4570].
Phylogeny: 16S rRNA gene (AB011495) [4570].
Other taxonomic data: Polyamine [4921].
Genome sequence: CP002344 [8522].
Publication(s) using this strain [A04179, B06075, B09167, A11258]
Fee category: Domestic, A or C; Overseas, A or C.
Coriobacterium glomerans
JCM number: 10262 <-- DSM 20642 <-- F. Haas PW2.
Source: Intestinal tract of red soldier bug [4314].
Biochemistry/Physiology: [4314].
G+C (mol%): 60 (Tm) [4314].
Phylogeny: 16S rRNA gene (X79048).
Genome sequence: CP002628.
Publication(s) using this strain [B08036]
Fee category: Domestic, A or C; Overseas, A or C.
Atopobium rimae
JCM number: 10299 <-- DSM 7090 <-- ATCC 49626 <-- VPI D140H-11A.
Source: Human gingival crevices [4477].
Biochemistry/Physiology: [3162,4477].
Fatty acid: [4477].
Enzyme electrophoretic profile: [4477].
G+C (mol%): 45 (Tm) [4477].
DNA-DNA relatedness: [4477].
Phylogeny: 16S rRNA gene (AB540986, X67149) [3162].
Taxonomy: [3162].
Genome sequence: ACFE00000000.
More information: Cellular polyamines [6386].
Quality control by DNA sequences: 16S rRNA gene (AB540986).
Publication(s) using this strain [B08036, A10013, A10214]
Fee category: Domestic, A or C; Overseas, A or C.
Atopobium parvulum
JCM number: 10300 <-- DSM 20469 <-- VPI 0546 <-- A. R. Prévot 1246.
Source: Human gingival crevices [4477].
Biochemistry/Physiology: [2185,4477].
Fatty acid: [4477].
Enzyme electrophoretic profile: [4477].
G+C (mol%): 53 (Tm) [4477].
DNA-DNA relatedness: [4477].
Phylogeny: 16S rRNA gene (AB558168, X67150) [3162].
Taxonomy: [3162].
Genome sequence: CP001721 [8186].
Quality control by DNA sequences: 16S rRNA gene (AB558168).
Publication(s) using this strain [A04020, B08036, A10013, A10214]
Fee category: Domestic, A or C; Overseas, A or C.
Kribbella flavida
JCM number: 10339 <-- KCTC 9580 <-- IFO 14399 <-- J. Ruan 65-N86.
Source: Soil, near Beijing, China [725].
Biochemistry/Physiology: [725,4585].
Cell wall: Chemotype I (LL-A2pm, Gly, D-Glu, L-Ala, D-Ala) [725,4585].
Fatty acid: [4585,5747].
Quinone: MK-9(H4) [4585].
Polar lipid: PC [4585].
G+C (mol%): 70 (HPLC) [4585].
DNA-DNA relatedness: [4585].
Phylogeny: 16S rRNA gene (AF005017, AY253863) [4327,4585,5747], RNase P RNA gene (AF110045) [4865], gyrB (EU434809) [8104].
Other taxonomic data: 16S-23S rRNA ITS (AF017503) [4385].
Taxonomy: [4585].
Genome sequence: CP001736 [8407].
Fee category: Domestic, A or C; Overseas, A or C.
Corynebacterium lipophiloflavum
JCM number: 10383 <-- CCUG 37336 <-- G. Funke DMMZ 1944 <-- W. R. Heizmann.
Source: Patient with bacterial vaginosis, Germany [4371].
Biochemistry/Physiology: [4371].
Cell wall: meso-A2pm [4371].
Fatty acid: [4371].
G+C (mol%): 65 (HPLC) [4371].
Phylogeny: 16S rRNA gene (Y09045) [4371].
Other taxonomic data: Mycolic acid [4371].
Genome sequence: ACHJ00000000.
Fee category: Domestic, A or C; Overseas, A or C.
Corynebacterium glucuronolyticum
JCM number: 10394 <-- CIP 104297 <-- H. Monteil IBS B 12915.
Source: Semen of a patient with prostatitis, Strasbourg, France [4369].
Biochemistry/Physiology: [4369,5251].
Cell wall: meso-A2pm; Ara, Gal [4369].
G+C (mol%): 59.7 (Capillary) [4369].
DNA-DNA relatedness: [4369].
Phylogeny: 16S rRNA gene (AJ277970, X84375) [4369,5251].
Other taxonomic data: Mycolic acid (C26-36) [4369].
Taxonomy: [5251].
Genome sequence: ACHF00000000.
More information: Type strain of Corynebacterium seminale [4369].
Fee category: Domestic, A or C; Overseas, A or C.
Corynebacterium urealyticum
JCM number: 10395 <-- CIP 103524 <-- NCTC 12011 <-- ATCC 43042 <-- F. Soriano strain 1 (strain Armendariz).
Source: Bladder stone, Madrid, Spain.
Cell wall: meso-A2pm; Ara, Gal [4366].
Fatty acid: [4366].
Quinone: MK-9(H2) [4366].
Polar lipid: PG, DPG, PE, PI, PIMs [4366].
G+C (mol%): 62 (Tm) [4366], 65 (HPLC) [5439].
DNA-DNA relatedness: [4366].
Phylogeny: 16S rRNA gene (X81913, X84439) [3956].
Other taxonomic data: Mycolic acid (C26-36) [4366].
Genome sequence: AM942444.
Fee category: Domestic, A or C; Overseas, A or C.
Clostridium hylemonae
JCM number: 10539 <-- F. Takamine TN271.
Source: Human feces [4727].
Biochemistry/Physiology: [4727].
G+C (mol%): 48.6 (HPLC) [4727].
DNA-DNA relatedness: [4727].
Phylogeny: 16S rRNA gene (AB023972) [4727].
Genome sequence: ABYI00000000.
More information: Bile acid 7α-dehydroxylating activity [4727].
Publication(s) using this strain [A09198, A10101]
Fee category: Domestic, A or C; Overseas, A or C.
Clostridium hiranonis
JCM number: 10541 <-- F. Takamine TO931.
Source: Human feces [4863].
Biochemistry/Physiology: [4863].
G+C (mol%): 31.1 (HPLC) [4863].
DNA-DNA relatedness: [4863].
Phylogeny: 16S rRNA gene (AB023970) [4863].
Genome sequence: ABWP00000000.
More information: Bile acid 7α-dehydroxylating activity [4863]; Enzyme activity [4863].
Publication(s) using this strain [A09198, A10101]
Fee category: Domestic, A or C; Overseas, A or C.
Sulfolobus tokodaii
JCM number: 10545 <-- T. Oshima 7.
Source: Beppu hot springs, Japan [5166].
Biochemistry/Physiology: [5161].
DNA-DNA relatedness: [5161].
Phylogeny: 16S rRNA gene [5161].
Other taxonomic data: Polyamine [5609].
Genome sequence: BA000023 [5046].
More information: Thermostable esterase [5951]; Glucose-1-phophate thymidylyltransferase homologue [6171].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 07500.
Publication(s) using this strain [A04022, A04062, A05175, A06021, A06197, A06248, A08165, A08256, A09211, A09212, A10060, A11073, A11310]
Fee category: Domestic, A or C; Overseas, A or C.
Thermococcus zilligii
JCM number: 10554 <-- DSM 2770 <-- H. Morgan AN1.
Source: Thermal pool at Kuirau Park, Rotorua, New Zealand [4565].
Biochemistry/Physiology: [4565].
G+C (mol%): 46.2 (Tm) [4565], 54.48 (Genome sequence) [9132].
Phylogeny: 16S rRNA gene (U76534) [4566].
Other taxonomic data: Polyamine [4920,5609].
Genome sequence: (AJLF00000000) [9132].
Publication(s) using this strain [A04193, A07262, A08175]
Fee category: Domestic, B; Overseas, B.
Pyrobaculum oguniense
JCM number: 10595 <-- Y. Sako TE7.
Source: Terrestrial hot spring at Oguni-cho, Kumamoto, Japan [4896].
Biochemistry/Physiology: [4896].
G+C (mol%): 48 (HPLC) [4896].
DNA-DNA relatedness: [4896].
Phylogeny: 16S rRNA gene (AB029339) [4896].
Other taxonomic data: Polyamine [5609].
Genome sequence: CP003316 [9162].
More information: Intron [5461].
Publication(s) using this strain [A06021, A07175, A09212]
Fee category: Domestic, A or C; Overseas, A or C.
Bifidobacterium animalis subsp. lactis
JCM number: 10602 <-- M. Matsumoto LKM501 <-- DSM 10140 <-- L. Meile <-- U. Rüger UR1.
Source: Fermented milk [4422].
Biochemistry/Physiology: [4422,5736].
G+C (mol%): 61.3 (HPLC) [5742].
DNA-DNA relatedness: [5742].
Phylogeny: 16S and 23S rRNA genes (X89513) [4422], 16S rRNA gene (AB050136), hsp60 (AY004282) [5374].
Taxonomy: [5736,5742].
Genome sequence: CP001606 [9001].
More information: Protein profile [5736]; FAFLP fingerprint [5736].
Quality control by DNA sequences: 16S rRNA gene (AB507074).
Publication(s) using this strain [A04079, B07183, A09026, A09198, A10101, A11008, A12011]
Fee category: Domestic, A or C; Overseas, A or C.
Catenibacterium mitsuokai
JCM number: 10609 <-- Y. Benno RCA14-39.
Source: Papua New Guinea highlanders' faeces [4759].
Biochemistry/Physiology: [4759].
Cell wall: (L-Ala)-D-Glu-meso-A2pm [4759].
G+C (mol%): 36.6 (HPLC) [4759].
DNA-DNA relatedness: [4759].
Phylogeny: 16S rRNA gene (AB030224) [4759].
Genome sequence: ACCK00000000.
Publication(s) using this strain [B08109]
Fee category: Domestic, A or C; Overseas, A or C.
Bacillus subtilis subsp. subtilis
JCM number: 10629 <-- H. Yoshikawa <-- S. Dusko Ehrich <-- C. Anagnostopoulos <-- J. Spizizen 168 (trpC2).
Phylogeny: 16S rRNA gene (AB598744).
Genome sequence: AL009126 [4965].
Quality control by DNA sequences: 16S rRNA gene (AB598744).
Publication(s) using this strain [A07285]
Fee category: Domestic, A or C; Overseas, A or C.
Collinsella stercoris
JCM number: 10641 <-- Y. Benno RCA55-54.
Source: Human feces [4825].
Biochemistry/Physiology: [4825].
G+C (mol%): 61.2 (HPLC) [4825].
DNA-DNA relatedness: [4825].
Phylogeny: 16S rRNA gene (AB031061, AB558488) [4825].
Genome sequence: ABXJ00000000.
More information: Species-specific primer [4825].
Quality control by DNA sequences: 16S rRNA gene (AB558488).
Publication(s) using this strain [A04020, B08036, A10013]
Fee category: Domestic, A or C; Overseas, A or C.
Collinsella intestinalis
JCM number: 10643 <-- Y. Benno RCA56-68.
Source: Human feces [4825].
Biochemistry/Physiology: [4825].
G+C (mol%): 64.4 (HPLC) [4825].
DNA-DNA relatedness: [4825].
Phylogeny: 16S rRNA gene (AB031063, AB558489) [4825].
Genome sequence: ABXH00000000.
More information: Species-specific primer [4825].
Quality control by DNA sequences: 16S rRNA gene (AB558489).
  
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Publication(s) using this strain [A04020, B08036, A10013]
Fee category: Domestic, A or C; Overseas, A or C.
Halogeometricum borinquense
JCM number: 10706 <-- ATCC 700274 <-- R. Montalvo-Rodríguez PR3.
Source: Solar saltern, Cabo Rojo, Puerto Rico [4670].
Biochemistry/Physiology: [4670].
Polar lipid: [4670].
G+C (mol%): 59 (HPLC) [4670].
Phylogeny: 16S rRNA gene (AF002984) [4670,8352], rpoB' (AB477171) [8352].
Other taxonomic data: Polyamine [5431].
Genome sequence: CP001690 [8328].
Publication(s) using this strain [A04036, B06068, B07134, A07283, B10129, B10159, A10175, B10177, B10187, A12133, A12159]
Fee category: Domestic, A or C; Overseas, A or C.
Staphylothermus hellenicus
JCM number: 10830 <-- M. Thomm P8.
Source: Geothermally heated sediment at Palaeochori Bay, Milos, Greece [4847].
Biochemistry/Physiology: [4847].
G+C (mol%): 38.8 (HPLC) [4847].
DNA-DNA relatedness: [4847].
Phylogeny: 16S rRNA gene (AJ012645) [4847].
Other taxonomic data: Polyamine [5609].
Genome sequence: CP002051 [8820].
Publication(s) using this strain [A09212]
Fee category: Domestic, B; Overseas, B.
Bradyrhizobium japonicum
JCM number: 10833 <-- K. Minamisawa <-- H. H. Keyser USDA 110.
Source: Root nodules of Glycine max, FL, USA.
Genome sequence: BA000040 [8964].
Fee category: Domestic, A or C; Overseas, A or C.
Micromonospora aurantiaca
JCM number: 10878 <-- VKM Ac-1936 <-- INA 9442.
Source: Soil, USSR [835].
Biochemistry/Physiology: [835,1900].
G+C (mol%): 71.6 (HPLC) [5900].
Phylogeny: 16S rRNA gene (X92604) [4119], gyrB (AB015621) [4682].
Genome sequence: CP002162.
Publication(s) using this strain [B04003, B05135, B05188, B10109, B11086]
Fee category: Domestic, A or C; Overseas, A or C.
Rothia mucilaginosa
JCM number: 10910 <-- CCUG 20962 <-- CCM 2417 <-- T. Bergan 5762/67.
Source: Human throat, Norway.
Biochemistry/Physiology: [5898].
Cell wall: Type A3α (L-Lys-L-Ala) [4764].
Fatty acid: [4761].
G+C (mol%): 59 (Tm) [4761].
DNA-DNA relatedness: [4764,5898].
Phylogeny: 16S rRNA catalog [4764], 16S rRNA gene (X87758, X95483).
Other taxonomic data: Protein profile [4762]; Cytochrome pattern [4764].
Taxonomy: [4762].
Genome sequence: ACVO00000000.
Fee category: Domestic, A or C; Overseas, A or C.
Thermus thermophilus
JCM number: 10941 <-- S. Kuramitsu <-- T. Oshima HB8.
Source: Hot spring water at Mine Hot Spring, Shizuoka, Japan [4770,4771].
Biochemistry/Physiology: [4771,4774].
Cell wall: Orn [4772].
Quinone: MK-8 [4772].
G+C (mol%): 69 (Chemical) [4771].
DNA-DNA relatedness: [4772,4774].
Phylogeny: 16S rRNA gene (X07998) [4832].
Other taxonomic data: Polyamine [5950].
Taxonomy: Designation as the type strain [4772,4774].
Genome sequence: AP008226, plasmids pTT27 (AP008227), pTT8 (AP008228).
Quality control by DNA sequences: 16S rRNA gene (AB603517).
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 07914.
Publication(s) using this strain [A04179, A08174, A12080]
Fee category: Domestic, A or C; Overseas, A or C.
Caldanaerobacter subterraneus subsp. tengcongensis
JCM number: 11007 <-- Y. Ma MB4.
Source: Hot spring, Tengcong, China [5053].
Biochemistry/Physiology: [5053].
Cell wall: meso-A2pm [5053].
G+C (mol%): 33 (Tm) [5053].
Phylogeny: 16S rRNA gene (AB597259, AF209708) [5053].
Taxonomy: [7165].
Genome sequence: AE008691 [5343].
Quality control by DNA sequences: 16S rRNA gene (AB597259).
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 07088.
Publication(s) using this strain [A04179, A04207, A04217, A08174, A11258]
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides fragilis
JCM number: 11019 <-- CIP 77.16 <-- M. Sebald <-- NCTC 9343 <-- L. P. Garrod (St. Bartholomew' Hosp., London) strain Onslow.
Source: Appendix abscess [4007].
Biochemistry/Physiology: [1857].
Fatty acid: [3521].
G+C (mol%): 42 (Tm) [4007].
DNA-DNA relatedness: [1857,4007].
Phylogeny: 16S rRNA gene (AB510701) [3513,8440,8884], dnaJ (AB619875) [8884], gyrB (AB619913) [8884], hsp60 (AB510677) [8355,8440,8884], recA (AB619951) [8884], rpoB (AB619989) [8884].
Genome sequence: CR626927.
More information: Modified immuno PCR [4515]; Association with Japanese cedar pollinosis [7496].
Quality control by DNA sequences: 16S rRNA gene (AB510701), dnaJ (AB619875), gyrB (AB619913), hsp60 (AB510677), recA (AB619951), rpoB (AB619989).
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 06283.
Publication(s) using this strain [A07171, A07180, A07269, A08012, A08278, A09219, A09223, A09252, A10092, A10209, A10221, A10228, A10277, A10298, A11280, A11289, A12078]
Fee category: Domestic, A or C; Overseas, A or C.
Lachnoanaerobaculum saburreum
JCM number: 11021 <-- CIP 105341 <-- J. P. Carlier AIP 10202 <-- ATCC 33271 <-- L. V. Holdeman VPI 11763 <-- J. M. Hardie T2.
Source: Human oral cavity [9327].
Biochemistry/Physiology: [9327].
G+C (mol%): 37 (HPLC) [9327].
Phylogeny: 16S rRNA gene (AB525414).
Other taxonomic data: Polyamines [4622].
Genome sequence: AEPW00000000.
Quality control by DNA sequences: 16S rRNA gene (AB525414).
Fee category: Domestic, A or C; Overseas, A or C.
Slackia exigua
JCM number: 11022 <-- CIP 105133 <-- E. Hoshino S-7 <-- T. Sato.
Source: Human oral lesion [4815].
Biochemistry/Physiology: [4815].
G+C (mol%): 60 (HPLC) [4815].
DNA-DNA relatedness: [4815].
Phylogeny: 16S rRNA gene (AF101240) [4643].
Other taxonomic data: SDS-PAGE [4815].
Taxonomy: [4643].
Genome sequence: ACUX00000000.
Publication(s) using this strain [B08036, A10013, B10146, B10188, A10299]
Fee category: Domestic, A or C; Overseas, A or C.
Fusobacterium nucleatum subsp. vincentii
JCM number: 11023 <-- CIP 104988 <-- ATCC 49256 <-- J. L. Dzink EM48.
Source: Human oral cavity [3158].
Morphology: [3156].
Biochemistry/Physiology: [3158].
DNA-DNA relatedness: [3158].
Phylogeny: 16S rRNA gene (AJ006964, AM887529, GQ301040).
Genome sequence: AABF00000000 [8489].
Publication(s) using this strain [A10213, A10297, A11034]
Fee category: Domestic, A or C; Overseas, A or C.
Halorhabdus utahensis
JCM number: 11049 <-- DSM 12940 <-- M. Wainø AX-2.
Source: Sediment of Great Salt Lake, UT, USA [4807].
Biochemistry/Physiology: [4807].
Quinone: MK-8, MK-8(H2) [4807].
Polar lipid: [4807].
G+C (mol%): 64 (HPLC) [4807].
Phylogeny: 16S rRNA gene (AF071880) [4807,8352], rpoB' (AB477175) [8352].
Other taxonomic data: Polyamine [5431].
Genome sequence: CP001687 [8404].
Publication(s) using this strain [A10175, B11162, A12159]
Fee category: Domestic, A or C; Overseas, A or C.
Halobacterium sp.
JCM number: 11081 <-- ATCC 700922 <-- S. DasSarma <-- F. Doolittle NRC-1.
Other taxonomic data: Polyamine [5431].
Genome sequence: AE004437 [4848], plasmids pNRC100 (AF016485) [4856], pNRC200 (AE004438) [4848].
More information: Genome organization [4849].
Quality control by DNA sequences: 16S rRNA gene (AB603514).
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 07823.
Publication(s) using this strain [A04036, B07134, A12175]
Fee category: Domestic, A or C; Overseas, A or C.
Prevotella pallens
JCM number: 11140 <-- E. Könönen AHN 10371.
Source: Human oral cavity [4522].
Biochemistry/Physiology: [4522].
Fatty acid: [4522].
Phylogeny: 16S rRNA gene (AB547703, Y13105) [4522], hsp60 (AB480538) [7958,8355].
Genome sequence: AFPY00000000.
Quality control by DNA sequences: 16S rRNA gene (AB547703), hsp60 (AB480538).
Publication(s) using this strain [B04146, A04177, B05153, B09120, B10106, A10221]
Fee category: Domestic, A or C; Overseas, A or C.
Corynebacterium efficiens
JCM number: 11189 <-- R. Fudou YS-314.
Source: Soil, Kanagawa Pref., Japan [5260].
Biochemistry/Physiology: [5260].
Cell wall: meso-A2pm; Ara, Gal [5260].
Fatty acid: [5260].
Quinone: MK-9(H2) [5260].
Polar lipid: PI, PIM [5260].
G+C (mol%): 59.0 (Tm) [5260].
DNA-DNA relatedness: [5260].
Phylogeny: 16S rRNA gene (AB055963) [5260].
Genome sequence: BA000035 [5562].
Production: glutamic acid [5260].
Publication(s) using this strain [A09193]
Fee category: Domestic, A or C; Overseas, A or C.
Vulcanisaeta distributa
JCM number: 11212 <-- T. Itoh IC-017.
Source: Hot spring water, Ohwakudani, Kanagawa, Japan [5264].
Biochemistry/Physiology: [5264].
G+C (mol%): 45.4 (HPLC) [5264].
DNA-DNA relatedness: [5264].
Phylogeny: 16S rRNA gene (AB063630) [5264].
Other taxonomic data: Polyamine [5609].
Genome sequence: CP002100 [8376].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 08462.
Publication(s) using this strain [A06021, A09212]
Fee category: Domestic, B; Overseas, B.
Haliangium ochraceum
JCM number: 11303 <-- R. Fudou SMP-2.
Source: Dry Laminariales seaweed sample collected from a sandy beach (Aburatsubo-wan) of the Miura Peninsula, Japan [4989].
Morphology: [4989].
Biochemistry/Physiology: [4989,5289].
Fatty acid: [5289].
Quinone: MK-8 [5289].
G+C (mol%): 67 (HPLC) [5289].
Phylogeny: 16S rRNA gene (AB016470).
Other taxonomic data: Polyamine [5806].
Genome sequence: CP001804 [8188].
Publication(s) using this strain [A04202]
Fee category: Domestic, B; Overseas, B.
Oceanobacillus iheyensis
JCM number: 11309 <-- H. Takami HTE831.
Source: Deep-sea mud sample collected at a depth of 1,050 m on the Iheya Ridge of the Nansei Islands.
Biochemistry/Physiology: [5162,9456].
Fatty acid: [5162].
Quinone: MK-7 [5162].
G+C (mol%): 35.8 (HPLC) [5162].
DNA-DNA relatedness: [5162].
Phylogeny: 16S rRNA gene (AB010863) [5162].
Genome sequence: BA000028 [6052].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 08107.
Publication(s) using this strain [B05079, A05180, B09166]
Fee category: Domestic, A or C; Overseas, A or C.
Sulfolobus solfataricus
JCM number: 11322 <-- DSM 1617 <-- W. Zillig P2.
Source: Volcanic hot spring at Pisciarelli Solfatara, Italy [3319].
Biochemistry/Physiology: [3319,3679].
Other taxonomic data: S-layer component profile [3679]; Polyamine [5609].
Genome sequence: AE006641 [5016,5017].
More information: DNA-dependent RNA polymerase [3319].
Publication(s) using this strain [A04014, A06021, A09212, A12321]
Fee category: Domestic, A or C; Overseas, A or C.
Thermocrinis albus
JCM number: 11386 <-- W. Eder and K. O. Stetter HI 11/12.
Source: Grayish filaments collected from a hot streamlet in Hveragerthi, Iceland [5291].
Biochemistry/Physiology: [5291].
G+C (mol%): 49.6 (HPLC) [5291].
Phylogeny: 16S rRNA gene (AJ278895) [5291].
Other taxonomic data: Polyamine [5950].
Genome sequence: CP001931 [8332].
Publication(s) using this strain [A04179]
Fee category: Domestic, B; Overseas, B.
Gemmatimonas aurantiaca
JCM number: 11422 <-- S. Hanada T-27.
Source: Laboratory-scale anaerobic-aerobic sequential batch reactor operated under EBPR conditions [5494].
Biochemistry/Physiology: [5494].
Fatty acid: [5494].
Quinone: MK-9 [5494].
G+C (mol%): 66 (HPLC) [5494].
Phylogeny: 16S rRNA gene (AB072735) [5494].
Genome sequence: AP009153.
Fee category: Domestic, A or C; Overseas, A or C.
Sanguibacter keddieii
JCM number: 11429 <-- IFO 16158 <-- NCIMB 703025 <-- J. F. Fernández-Garayzábal ST-74.
Source: Venous blood from healthy cow [5059].
Biochemistry/Physiology: [5059].
Cell wall: Type A4α (L-Lys-Ser-D-Glu) [5059].
Fatty acid: [5059].
G+C (mol%): 70 (Tm) [5059].
Phylogeny: 16S rRNA gene (X79450) [5059].
Genome sequence: CP001819 [8209].
Fee category: Domestic, A or C; Overseas, A or C.
Beutenbergia cavernae
JCM number: 11478 <-- CIP 106362 <-- I. Groth HKI 0122 (=strain 2163-026).
Source: Soil between rocks, Reed Flute Cave, near Guilin Guangxi, China [5106].
Biochemistry/Physiology: [5106].
Cell wall: Type A4α (L-Lys-L-Glu); N-acetyl Mur [5106].
Fatty acid: [5106].
Quinone: MK-8(H4), MK-8(2) [5106].
Polar lipid: PI, DPG [5106].
G+C (mol%): 71 (HPLC) [5106].
Phylogeny: 16S rRNA gene (Y18378) [5106].
Genome sequence: CP001618 [8207].
Fee category: Domestic, A or C; Overseas, A or C.
Jonesia denitrificans
JCM number: 11481 <-- CIP 55.134 <-- R. Sohier L26.
Source: Boiled ox blood.
Phylogeny: 16S rRNA catalog [5058], 16S rRNA gene (X78420, X83811) [3946].
Taxonomy: [5058].
Genome sequence: CP001706 [8212].
Publication(s) using this strain [A07208, A07216, A08210, A08214, A08217, A09199, A09203, A09205, A10091]
Fee category: Domestic, A or C; Overseas, A or C.
Kytococcus sedentarius
JCM number: 11482 <-- CIP 81.72 <-- CCM 314 <-- C. E. ZoBell 541.
Source: Seawater.
Biochemistry/Physiology: [5102].
Cell wall: Lys, Glu, Ala (1 : 2.92 : 2.08) [5102], type A4α (L-Lys-D-Glu2) [3954].
Fatty acid: [3954].
Quinone: MK-8, MK-9, MK-10 [3954].
Polar lipid: DPG, PG, PI [3954].
G+C (mol%): 69.3 (Tm) [5102].
Phylogeny: 16S rRNA gene (X87755) [3954].
Taxonomy: [3954].
Genome sequence: CP001686 [8206].
Fee category: Domestic, A or C; Overseas, A or C.
Renibacterium salmoninarum
JCM number: 11484 <-- CIP 103036 <-- ATCC 33209 <-- J. E. Sanders Lea-1-74.
Source: Kidney lesion of yearling Chinook salmon, Leaburg Hatchery, OR, USA [5103].
Biochemistry/Physiology: [5103].
Cell wall: Ala, Glu, Lys, Gly; Rha, Glc, Ara, Man [5103].
G+C (mol%): 53.52 [5103].
Phylogeny: 16S rRNA gene (AB017538, AF180950, X51601) [5116,5117].
Genome sequence: CP000910.
Fee category: Domestic, A or C; Overseas, A or C.
Conexibacter woesei
JCM number: 11494 <-- P. Monciardini ID131577.
Source: Soil from a wooded area, Gerenzano, Italy [5421].
Biochemistry/Physiology: [5421].
Cell wall: meso-A2pm (type A1γ) [5421].
Fatty acid: [5421].
Quinone: MK-7(H4) [5421].
Polar lipid: PI [5421].
G+C (mol%): 71 (HPLC) [5421].
Phylogeny: 16S rRNA gene (AJ440237), 23S rRNA gene (AJ440238) [5421].
Genome sequence: CP001854 [8219].
Fee category: Domestic, A or C; Overseas, A or C.
Salinisphaera shabanensis
JCM number: 11575 <-- R. Huber E1L3A.
Source: Brine-seawater interface of the Shaban Deep, Red Sea [5398].
Biochemistry/Physiology: [5398].
G+C (mol%): 61.8 [5398].
Phylogeny: 16S rRNA gene (AJ421425) [5398].
Genome sequence: [8751].
More information: Compatible solute [5398].
Publication(s) using this strain [A10110, B12158]
Fee category: Domestic, A or C; Overseas, A or C.
Marinithermus hydrothermalis
JCM number: 11576 <-- S. Nakagawa T1.
Source: Deep-sea hydrothermal vent chimney at Suiyo Seamount in the Izu-Bonin Arc, Japan [5402].
Biochemistry/Physiology: [5402].
Fatty acid: i-C15:0, i-C17:0, C16:0, a-C15:0, 3OH-C11:0 [5402].
Quinone: MK-8 [5402].
G+C (mol%): 68.6 (HPLC) [5402].
Phylogeny: 16S rRNA gene (AB079382) [5402].
Other taxonomic data: Polyamine [5950].
Genome sequence: CP002630 [9021].
Publication(s) using this strain [A04179]
Fee category: Domestic, A or C; Overseas, A or C.
Sulfuricurvum kujiense
JCM number: 11577 <-- Y. Kodama YK-1.
Source: Underground crude-oil storage cavity in Kuji, Iwate, Japan [5829].
Biochemistry/Physiology: [5829].
G+C (mol%): 45 (HPLC) [5829].
Phylogeny: 16S rRNA gene (AB053951) [5829].
Genome sequence: CP002355, plasmids pSULKU01 (CP002356), pSULKU02 (CP002357), pSULK03 (CP002358), pSULKU04 (CP002359) [9022].
Publication(s) using this strain [C04124]
Fee category: Domestic, B; Overseas, B.
Brachybacterium faecium
JCM number: 11609 <-- CCM 4372 <-- IFO 14762 <-- NCIB 9860 <-- H. E. Schefferle 6-10.
Source: Poultry deep litter.
Biochemistry/Physiology: [3715,5189,5190].
Cell wall: meso-A2pm, Glu, Gly, Ala; N-glycolyl Mur [3715,5190].
Fatty acid: [3715,5189].
Quinone: MK-7, MK-8 [5189].
Polar lipid: DPG, PG [3715,5189].
G+C (mol%): 69.4 (Tm) [5189], 72.1 (HPLC) [3715].
DNA-DNA relatedness: [3715,5190].
Phylogeny: 16S rRNA gene (X83810, X91032) [5190].
Genome sequence: CP001643 [8205].
Fee category: Domestic, A or C; Overseas, A or C.
Brevibacterium mcbrellneri
JCM number: 11682 <-- CCUG 37313 <-- G. Funke DMMZ 669 <-- M. E. McBride E2cr.
Source: Genital hair nodule of a patient with white piedra [5252].
Biochemistry/Physiology: [5252].
Cell wall: meso-A2pm; Glc, Gal, Xyl, Rib [5252].
Fatty acid: [5252].
G+C (mol%): 63.05 (Tm) [5252].
Phylogeny: 16S rRNA gene (X93594) [5253].
Genome sequence: ADNU00000000.
Fee category: Domestic, A or C; Overseas, A or C.
Methanosphaera stadtmanae
JCM number: 11832 <-- DSM 3091 <-- T. L. Miller MCB-3.
Source: Human feces [5320].
Biochemistry/Physiology: [5320].
G+C (mol%): 25.8 (Tm) [5320].
Phylogeny: 16S rRNA (M59139).
Genome sequence: CP000102 [6236].
Publication(s) using this strain [A07262]
Fee category: Domestic, B; Overseas, B.
Methanosarcina mazei
JCM number: 11833 <-- DSM 3647 <-- F. Widdel Gö1.
Source: Sewage plant in Göttingen, Germany.
Phylogeny: 16S rRNA gene [5322].
Other taxonomic data: Whole-cell protein profile [5323].
Genome sequence: AE008384 [5390].
More information: Preparation of protoplasts [5321].
Publication(s) using this strain [A07262]
Fee category: Domestic, B; Overseas, B.
Thermodesulfatator indicus
JCM number: 11887 <-- H. Moussard CIR29812.
Source: Deep-sea hydrothermal vent site at the Kairei vent field on the Central Indian Ridge [5619].
Biochemistry/Physiology: [5619].
Fatty acid: [5619].
Quinone: MK-7 [5619].
Polar lipid: [5619].
G+C (mol%): 46 (HPLC) [5619].
Phylogeny: 16S rRNA gene (AF393376) [5619].
Other taxonomic data: Polyamine [5950].
Genome sequence: CP002683 [9113].
Publication(s) using this strain [C04121, A04179]
Fee category: Domestic, B; Overseas, B.
Corynebacterium kroppenstedtii
JCM number: 11950 <-- CIP 105744 <-- CCUG 35717 <-- Infect. Dis. Clinic, Uddevalla, Sweden.
Source: Sputum of an 82-year-old female with pulmonary disease [5392].
Biochemistry/Physiology: [5392].
Cell wall: meso-A2pm; arabinogalactan [5392].
Fatty acid: [5392].
G+C (mol%): 62 (Tm) [5392].
Phylogeny: 16S rRNA gene (Y10077) [5392].
Other taxonomic data: Lacking mycolic acids [5392].
Genome sequence: CP001620 [8716].
Fee category: Domestic, A or C; Overseas, A or C.
Rubrobacter xylanophilus
JCM number: 11954 <-- CIP 105412 <-- F. Nobre PRD-1.
Source: Thermally polluted runoff (temperature, 50C) from a carpet factory in Wilton, Wiltshire, UK [5391].
Biochemistry/Physiology: [5391].
Cell wall: Lys, Glu, Ala (type A3α) [5391].
Fatty acid: [5391].
Quinone: MK-8 [5391].
Polar lipid: PG, DPG [5391].
G+C (mol%): 67.6 (Tm) [5391].
Phylogeny: 16S rRNA gene (X87135) [5391].
Genome sequence: CP000386 ((http://genome.jgi-psf.org/finished_microbes/rubxy/rubxy.home.html.
Fee category: Domestic, A or C; Overseas, A or C.
Corynebacterium variabile
JCM number: 12073 <-- NCIMB 30131 <-- T. M. Cogan DPC 5310.
Source: Surface of a smear-ripened cheese, Ireland [5411].
Biochemistry/Physiology: [5411].
Cell wall: meso-A2pm; Ara, Gal [5411].
Quinone: MK-9(H2) [5411].
Polar lipid: DPG, PG, PI, PGM [5411].
G+C (mol%): 60 (HPLC) [5411].
DNA-DNA relatedness: [5411,6012].
Phylogeny: 16S rRNA gene (AF267148, AJ783438) [5411,6012].
DNA typing: REP-PCR pattern [6012].
Other taxonomic data: Mycolic acid (C22-36) [5411]; PFGE pattern of restriction digest [5411]; Whole-cell protein profile [6012].
Taxonomy: [6012].
Genome sequence: CP002917.
More information: Type strain of Corynebacterium mooreparkense [5411].
Fee category: Domestic, A or C; Overseas, A or C.
Prevotella salivae
JCM number: 12084 <-- M. Sakamoto EPSA11.
Source: Human oral cavity [5711].
Biochemistry/Physiology: [5711].
Fatty acid: [5711].
Quinone: [5711].
G+C (mol%): 41.3 (HPLC) [5711].
DNA-DNA relatedness: [5711].
Phylogeny: 16S rRNA gene (AB108826) [5711], hsp60 (AB547630) [8355].
Genome sequence: AEQO00000000.
Quality control by DNA sequences: 16S rRNA gene (AB108826), hsp60 (AB547630).
Publication(s) using this strain [B04146, B05153, B07149, A08170, A10214, A10221]
Fee category: Domestic, A or C; Overseas, A or C.
Thermovibrio ammonificans
JCM number: 12110 <-- C. Vetriani HB-1.
Source: Walls of an active deep-sea hydrothermal vent chimney on the East Pacific Rise [5618].
Biochemistry/Physiology: [5618].
G+C (mol%): 54.6 (HPLC) [5618].
DNA-DNA relatedness: [5618].
Phylogeny: 16S rRNA gene (AY263403) [5618].
Other taxonomic data: Polyamine [5950].
Genome sequence: NC_014926 [9160].
Publication(s) using this strain [C04099, A04179, A08174]
Fee category: Domestic, B; Overseas, B.
Methanosarcina acetivorans
JCM number: 12185 <-- DSM 2834 <-- K. R. Sowers C2A.
Source: Anaerobic sediments of a marine canyon located near La Jolla, CA, USA [5498].
Biochemistry/Physiology: [5498].
G+C (mol%): 41 (Tm) [5498].
Phylogeny: 16S rRNA (M59128).
Other taxonomic data: Whole-cell protein profile [5323].
Genome sequence: AE010299 [5499].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 08988.
Publication(s) using this strain [A07262, A10306, A12053]
Fee category: Domestic, B; Overseas, B.
Bacillus pseudomycoides
JCM number: 12231 <-- NRRL B-617 <-- L. J. Wickerham.
Source: Soil [5512].
Biochemistry/Physiology: [5512].
Fatty acid: [5512].
DNA-DNA relatedness: [5512].
Phylogeny: 16S rRNA gene (AF013121) [5512].
Genome sequence: CM000745.
Fee category: Domestic, A or C; Overseas, A or C.
Bacillus subtilis subsp. spizizenii
JCM number: 12233 <-- NRRL B-23049 <-- F. M. Cohan TU-B-10.
Source: Tunisian desert [5156].
DNA-DNA relatedness: [5156].
Phylogeny: 16S rRNA gene (AB325584, AF074970) [5156,8961].
Genome sequence: CP002905.
Fee category: Domestic, A or C; Overseas, A or C.
Prevotella buccae
JCM number: 12245 <-- CCUG 15401 <-- ATCC 33574 <-- L. V. Holdeman VPI D3A-6.
Source: Human gingival sulcus [5554].
Morphology: [5554].
Biochemistry/Physiology: [5554].
G+C (mol%): 50 (Tm) [5554].
DNA-DNA relatedness: [5554].
Phylogeny: 16S rRNA gene (AB547675), hsp60 (AB547596) [8355].
Other taxonomic data: SDS-PAGE [5554].
Genome sequence: AEPD00000000.
Quality control by DNA sequences: 16S rRNA gene (AB547675), hsp60 (AB547596).
Publication(s) using this strain [A08170, A10214, A10221]
Fee category: Domestic, A or C; Overseas, A or C.
Prevotella buccalis
JCM number: 12246 <-- CCUG 15557 <-- NCDO 2354 <-- H. N. Shah HS4.
Source: Dental plaque [5555].
Morphology: [5555].
Biochemistry/Physiology: [5555].
Fatty acid: [5555].
Quinone: MK-11, MK-12 [5555].
G+C (mol%): 51 (Tm) [5555].
DNA-DNA relatedness: [5555].
Phylogeny: 16S rRNA gene (AB547676), hsp60 (AB547597) [8355].
Genome sequence: ADEG00000000.
Quality control by DNA sequences: 16S rRNA gene (AB547676), hsp60 (AB547597).
Publication(s) using this strain [A08170, A10221]
Fee category: Domestic, A or C; Overseas, A or C.
Prevotella nigrescens
JCM number: 12250 <-- CCUG 9560 <-- NCTC 9336 <-- L. P. Garrod.
Source: Human gingival crevice.
Biochemistry/Physiology: [4868].
Enzyme electrophoretic profile: [3863].
G+C (mol%): 42.5 (HPLC) [4868].
DNA-DNA relatedness: [4725,4868].
Phylogeny: 16S rRNA gene (AB547696), hsp60 (AB547620) [8355].
Genome sequence: AFPX00000000.
More information: Peptidase, lipase, malate dehydrogenase and glutamate dehydrogenase [4868].
Quality control by DNA sequences: 16S rRNA gene (AB547696), hsp60 (AB547620).
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 06612.
Publication(s) using this strain [B09120, B10106, A10221]
Fee category: Domestic, A or C; Overseas, A or C.
Prevotella oralis
JCM number: 12251 <-- CCUG 15408 <-- ATCC 33269 <-- L. V. Holdeman VPI D27B-24.
Source: Human oral cavity [5555].
Biochemistry/Physiology: [3077,5555].
G+C (mol%): 45 (Tm) [5555].
Phylogeny: 16S rRNA gene (AB547698, L16480), hsp60 (AB547622) [8355].
Genome sequence: AEPE00000000.
Quality control by DNA sequences: 16S rRNA gene (AB547698), hsp60 (AB547622).
Publication(s) using this strain [B07149, A10221]
Fee category: Domestic, A or C; Overseas, A or C.
Porphyromonas gingivalis
JCM number: 12257 <-- CIP 103683 <-- J. P. Carlier AIP 10005 <-- ATCC 33277 <-- A. L. Coykendall 2561 <-- J. Slots.
Source: Human gingival sulcus [5559].
Morphology: [5559].
Biochemistry/Physiology: [3525,5559].
Fatty acid: [3525].
G+C (mol%): 47.1 (Tm) [5559].
DNA-DNA relatedness: [3525,5559].
Phylogeny: 16S rRNA gene (AB547660), hsp60 (AB547581) [8355].
Genome sequence: AP009380 [8221].
Quality control by DNA sequences: 16S rRNA gene (AB547660), hsp60 (AB547581).
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 06613.
Publication(s) using this strain [A08012, A10221, A12035, A12273]
Fee category: Domestic, A or C; Overseas, A or C.
Xylanimonas cellulosilytica
JCM number: 12276 <-- CECT 5975 <-- E. Velázquez XIL07 <-- R. Rivas.
Source: Decayed tree (Ulmus nigra), Salamanca, Spain [5568].
Biochemistry/Physiology: [5568].
Cell wall: L-Lys-D-Asp; Gal, Rha [5568].
Fatty acid: a-C15:0, i-C15:0 [5568].
Quinone: MK-9(H4), MK-8(H4) [5568].
Polar lipid: PG, DPG, PI, PIM [5568].
G+C (mol%): 73 (Tm) [5568].
Phylogeny: 16S rRNA gene (AF403541) [5568].
Genome sequence: CP001821 [8214].
More information: Hydrolyses xylan [5568].
Fee category: Domestic, A or C; Overseas, A or C.
Kangiella koreensis
JCM number: 12317 <-- J.-H. Yoon SW-125.
Source: Tidal flat sediment collected from Daepo Beach, Yellow Sea, Korea [5793].
Biochemistry/Physiology: [5793].
Fatty acid: [5793].
Quinone: Q-8 [5793].
G+C (mol%): 44 (HPLC) [5793].
Phylogeny: 16S rRNA gene (AY520560) [5793].
Genome sequence: CP001707 [8229].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 08104.
Fee category: Domestic, A or C; Overseas, A or C.
Arthrobacter chlorophenolicus
JCM number: 12360 <-- KCTC 9906 <-- DSM 12829 <-- J. K. Jansson A6.
Source: Soil, Fort Collins, CO, USA [5633].
Biochemistry/Physiology: [5633].
Cell wall: L-Lys-L-Ser-L-Thr-L-Ala (type A3α); N-acetyl Mur [5633].
Fatty acid: [5633].
G+C (mol%): 65.1 (Tm) [5633].
DNA-DNA relatedness: [5633].
Phylogeny: 16S rRNA gene (AF102267) [5633].
Genome sequence: CP001341.
More information: Degrades 4-chlorophenol [5633].
Publication(s) using this strain [A09144]
Fee category: Domestic, A or C; Overseas, A or C.
Thermococcus kodakarensis
JCM number: 12380 <-- T. Imanaka KOD1.
Source: Solfatara at a wharf on Kodakara Island, Kagoshima, Japan [5807].
Biochemistry/Physiology: [5796,5807].
DNA-DNA relatedness: [5796].
Phylogeny: 16S rRNA gene (D38650) [5796].
Genome sequence: AP006878 [5963].
Publication(s) using this strain [B04029, A05183, A07262, A08206, A12337]
Fee category: Domestic, B; Overseas, B.
Nitratifractor salsuginis
JCM number: 12458 <-- S. Nakagawa E9I37-1.
Source: Deep-sea hydrothermal vent chimney structures at the Iheya North hydrothermal field in the Mid-Okinawa Trough, Japan [5971].
Biochemistry/Physiology: [5971].
Fatty acid: [5971].
G+C (mol%): 35.5 (HPLC) [5971].
Phylogeny: 16S rRNA gene (AB175500) [5971].
Genome sequence: CP002452 [8754].
Publication(s) using this strain [C05160]
Fee category: Domestic, B; Overseas, B.
Glaciecola nitratireducens
JCM number: 12485 <-- J. Chun FR1064.
Source: Surface seawater sample collected off Jeju Island, Republic of Korea [6477].
Biochemistry/Physiology: [6477].
Fatty acid: [6477].
G+C (mol%): 44 (Tm) [6477].
DNA-DNA relatedness: [6477].
Phylogeny: 16S rRNA gene (AY787042) [6477].
Genome sequence: CP003060 [8947].
Publication(s) using this strain [C06113, C11231]
Fee category: Domestic, A or C; Overseas, A or C.
Olsenella uli
JCM number: 12494 <-- CCUG 31166 <-- ATCC 49627 <-- VPI D76D-27C.
Source: Saliva of periodontal patient [5051].
Biochemistry/Physiology: [5051].
Fatty acid: [5051].
G+C (mol%): 64 (HPLC) [5051].
Phylogeny: 16S rRNA gene (AF292373, AY005814, FN178464) [5051].
Genome sequence: CP002106 [9000].
Publication(s) using this strain [B08036, A10013]
Fee category: Domestic, A or C; Overseas, A or C.
Lactobacillus amylolyticus
JCM number: 12529 <-- LMG 18796 <-- I. Bohak LA 5 <-- M. Leibhard.
Source: Brewery [4870].
Morphology: [4870].
Biochemistry/Physiology: [4870].
Cell wall: L-Lys-D-Asp [4870].
G+C (mol%): 39 (Tm) [4870].
DNA-DNA relatedness: [4870].
Phylogeny: 16S rRNA gene (Y17361) [4870], 23S rRNA gene (Y17360) [4870].
Genome sequence: ADNY00000000.
Quality control by DNA sequences: 16S rRNA gene (AB289026).
Fee category: Domestic, A or C; Overseas, A or C.
Scardovia inopinata
JCM number: 12537 <-- AS 1.2187 <-- DSM 10107 <-- B. Biavati <-- F. Crociani B3109.
Source: Human dental caries [5710].
Biochemistry/Physiology: [5374,5710].
G+C (mol%): 45 (Tm) [5710].
DNA-DNA relatedness: [5710].
Phylogeny: 16S rRNA gene (D89332), hsp60 (AY004281) [5374].
Taxonomy: [5374].
Genome sequence: ADCX00000000.
Publication(s) using this strain [B07183]
Fee category: Domestic, A or C; Overseas, A or C.
Parascardovia denticolens
JCM number: 12538 <-- AS 1.2280 <-- DSM 10105 <-- B. Biavati <-- F. Crociani B3028.
Source: Human dental caries [5710].
Biochemistry/Physiology: [5374,5710].
G+C (mol%): 55 (Tm) [5710].
DNA-DNA relatedness: [5710].
Phylogeny: 16S rRNA gene (D89331), hsp60 (AF240565) [5374].
Taxonomy: [5374].
Genome sequence: ADEB00000000, AEON00000000.
Publication(s) using this strain [B07183]
Fee category: Domestic, A or C; Overseas, A or C.
Prevotella multiformis
JCM number: 12541 <-- M. Sakamoto PPPA21.
Source: Human subgingival plaque [5964].
Biochemistry/Physiology: [5964].
Fatty acid: [5964].
Quinone: MK-10, MK-11, MK-12, MK-13 [5964].
G+C (mol%): 51.1 (HPLC) [5964].
DNA-DNA relatedness: [5964].
Phylogeny: 16S rRNA gene (AB182483) [5964], hsp60 (AB547617) [8355].
Genome sequence: AEWX00000000.
Quality control by DNA sequences: 16S rRNA gene (AB182483), hsp60 (AB547617).
Publication(s) using this strain [B05153, A08170, A10214, A10221]
Fee category: Domestic, A or C; Overseas, A or C.
Caminibacter mediatlanticus
JCM number: 12641 <-- C. Vetriani TB-2.
Source: Deep-sea hydrothermal vent chimney on the Mid-Atlantic Ridge [5970].
Biochemistry/Physiology: [5970].
G+C (mol%): 25.6 (HPLC) [5970].
Phylogeny: 16S rRNA gene (AY691430) [5970].
Genome sequence: ABCJ00000000 [8821].
Publication(s) using this strain [C05151]
Fee category: Domestic, B; Overseas, B.
Corynebacterium halotolerans
JCM number: 12676 <-- DSM 44683 <-- W.-J. Li YIM 70093.
Source: Saline soil, Xinjiang Province, China [5770].
Cell wall: meso-A2pm; Ara, Gal [5770].
Fatty acid: [5770].
Quinone: MK-9(H2), MK-8(H2) [5770].
Polar lipid: DPG, PG, PI, PIMs [5770].
G+C (mol%): 63 (Tm) [5770].
Phylogeny: 16S rRNA gene (AY226509) [5770].
Genome sequence: CP003697, CP003698 [9299].
Publication(s) using this strain [A11026]
Fee category: Domestic, A or C; Overseas, A or C.
Corynebacterium aurimucosum
JCM number: 12684 <-- CIP 107346 <-- S. K. Shukla CN-1.
Source: Female urogenital tract, Marshfield, WI, USA [5763,5778].
Biochemistry/Physiology: [5763,5778].
DNA-DNA relatedness: [5898].
Phylogeny: 16S rRNA gene (AF220220, AY536426) [5763,5778,5898].
Taxonomy: [5898].
Genome sequence: ACLH00000000, CP001601 [8715].
More information: Type strain of Corynebacterium nigricans [5763].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 07522.
Fee category: Domestic, A or C; Overseas, A or C.
Kineococcus radiotolerans
JCM number: 12686 <-- CIP 107704 <-- R. W. Phillips SRS30216 <-- C. J. Berry.
Source: Radioactive environment at the Savannah River Site, Aiken, SC, USA [5754].
Biochemistry/Physiology: [5754].
Fatty acid: [5754].
DNA-DNA relatedness: [5754].
Phylogeny: 16S rRNA gene (AF247813) [5754].
Genome sequence: CP000750 ((http://genome.jgi-psf.org/finished_microbes/kinra/kinra.home.html.
More information: Radiation resistance [5754].
Fee category: Domestic, A or C; Overseas, A or C.
Haloquadratum walsbyi
JCM number: 12705 <-- M. Dyall-Smith C23.
Source: Crystallizer pond water from the Cheetham Salt Works, Geelong, Victoria, Australia [5856].
Morphology: Cell wall [6614].
Biochemistry/Physiology: [6614].
Polar lipid: [6614].
G+C (mol%): 46.9 (HPLC) [6614].
DNA-DNA relatedness: [6614].
Phylogeny: 16S rRNA gene (AY676200) [5856,6614].
Genome sequence: FR746099, plasmids PL100 (FR746100), PL6A (FR746101), PL6B (FR746102) [8942].
Publication(s) using this strain [B07134, A08240, A09250]
Fee category: Domestic, A or C; Overseas, A or C.
Aspergillus flavus
JCM number: 12722 <-- IAM 13836 <-- M. A. Klich, SRRC.
Source: Peanut cotyledons.
Locality: USA.
Quinone: Q-10(H2) [3208].
Phylogeny: A fungal phylogeny based on 82 complete genomes [8242].
Genome sequence: Project ID: 13284 [8197].
More information: F. A. Hodges strain M52.
Production: aflatoxins B1 and B2 [6505].
Fee category: Domestic, A or C; Overseas, A or C.
Sulfurihydrogenibium yellowstonense
JCM number: 12773 <-- S. Nakagawa SS-5.
Source: Calcite Hot Spring in Yellowstone National Park, WY, USA [6192].
Biochemistry/Physiology: [6192].
G+C (mol%): 32 [6192].
Phylogeny: 16S rRNA gene (AY686713) [6192].
Genome sequence: ABZS00000000 [8929].
Publication(s) using this strain [C05112, A08174]
Fee category: Domestic, B; Overseas, B.
Corynebacterium resistens
JCM number: 12819 <-- Y. Kawamura GTC 2026 <-- Social Insurance Central General Hospital, Tokyo, Japan, SICGH 158.
Source: Blood culture from a patient with acute myelocytic leukemia [6087].
Biochemistry/Physiology: [6087].
Fatty acid: [6087].
G+C (mol%): 54.643 (HPLC) [6087].
DNA-DNA relatedness: [6087].
Phylogeny: 16S rRNA gene (AB128981) [6087].
Genome sequence: CP002857.
Publication(s) using this strain [C05185]
Fee category: Domestic, A or C; Overseas, A or C.
Halococcus hamelinensis
JCM number: 12892 <-- F. Goh 100A6.
Source: Stromalites of Shark Bay, Hamelin Pool, Western Australia [6382].
Biochemistry/Physiology: [6382].
Polar lipid: [6382].
G+C (mol%): 60.5 [6382].
DNA-DNA relatedness: [6382].
Phylogeny: 16S rRNA gene (DQ017835) [6382,8352], rpoB' (AB477156) [8352].
Other taxonomic data: Protein profile [6382].
Genome sequence: AJRK00000000 [9020].
Publication(s) using this strain [B06068, A07262, A10012, A10175, A11179]
Fee category: Domestic, A or C; Overseas, A or C.
Geobacillus kaustophilus
JCM number: 12893 <-- H. Takami HTA426.
Source: Mud from the Challenger Deep in the Mariana Trench (10,897 m depth) [5857].
Biochemistry/Physiology: [5858].
Fatty acid: [5858].
Quinone: MK-7 [5858].
G+C (mol%): 51.7 (HPLC) [5858].
DNA-DNA relatedness: [5858].
Phylogeny: 16S rRNA gene (AB002645) [5857].
Genome sequence: BA000043 [5859].
Publication(s) using this strain [A08174, A09257, A12044, A12066]
Fee category: Domestic, A or C; Overseas, A or C.
Haloquadratum walsbyi
JCM number: 12895 <-- H. Bolhuis HBSQ001.
Source: Salt-saturated crystallizer ponds of a solar saltern in Brac del Port, Alicante, Spain [5860].
Morphology: Cell wall [6614].
Biochemistry/Physiology: [6614].
Polar lipid: [6614].
G+C (mol%): 46.9 (HPLC) [6614].
DNA-DNA relatedness: [6614].
Phylogeny: 16S rRNA gene (AM180088) [6614,8352], rpoB' [8352].
Genome sequence: AM180088 [6557].
Publication(s) using this strain [B07134]
Fee category: Domestic, B; Overseas, B.
Eikenella corrodens
JCM number: 12952 <-- DSM 8340 <-- ATCC 23834 <-- S. D. Henriksen 333/54-55 <-- P. Holm <-- M. Eiken.
Source: Sputum [5873].
Biochemistry/Physiology: [5873].
G+C (mol%): 57-58 [5873].
Phylogeny: 16S rRNA gene (AB525415, M22512) [5954].
Genome sequence: ACEA00000000.
Quality control by DNA sequences: 16S rRNA gene (AB525415).
Fee category: Domestic, A or C; Overseas, A or C.
Capnocytophaga gingivalis
JCM number: 12953 <-- DSM 3290 <-- W. Mannheim 927-3 <-- ATCC 33624 <-- A. Tanner <-- S. C. Holt 27 <-- S. S. Socransky.
Source: Periodontal lesion [5885].
Biochemistry/Physiology: [5872,5885,5886].
G+C (mol%): 40 (Tm) [5885].
Phylogeny: 16S rRNA gene (AB638448, X67608) [6083].
Genome sequence: ACLQ00000000.
Quality control by DNA sequences: 16S rRNA gene (AB638448).
Publication(s) using this strain [A10314, A12071]
Fee category: Domestic, A or C; Overseas, A or C.
Prevotella multisaccharivorax
JCM number: 12954 <-- M. Sakamoto PPPA20.
Source: Subgingival plaque of a patient with chronic periodontitis [6131].
Biochemistry/Physiology: [6131].
Fatty acid: [6131].
Quinone: MK-12, MK-13 [6131].
G+C (mol%): 49.9 (HPLC) [6131].
Phylogeny: 16S rRNA gene (AB200414) [6131], hsp60 (AB547618) [8355].
Genome sequence: AFJE00000000 [8817].
Quality control by DNA sequences: 16S rRNA gene (AB200414), hsp60 (AB547618).
Publication(s) using this strain [C05093, A08170, A10221]
Fee category: Domestic, A or C; Overseas, A or C.
Ethanoligenens harbinense
JCM number: 12961 <-- D. Xing et al. YUAN-3.
Source: Anaerobic sludge of molasses wastewater [6313].
Biochemistry/Physiology: [6313].
Fatty acid: i-C16:0, i-C12:0 [6313].
G+C (mol%): 47.8 (Tm) [6313].
Phylogeny: 16S rRNA gene (AY295777) [6313].
Genome sequence: CP002400 [8701].
Publication(s) using this strain [C06180]
Fee category: Domestic, A or C; Overseas, A or C.
Capnocytophaga ochracea
JCM number: 12966 <-- DSM 7271 <-- ATCC 27872 <-- W. E. C. Moore VPI 2845 <-- W. Loesche SS31.
Source: Human oral cavity [5885].
Biochemistry/Physiology: [5885,5886].
G+C (mol%): 39 (Tm) [5885].
Phylogeny: 16S rRNA gene (AB671761, U41350).
Genome sequence: CP001632 [8223].
Quality control by DNA sequences: 16S rRNA gene (AB671761).
Publication(s) using this strain [A10314]
Fee category: Domestic, A or C; Overseas, A or C.
Capnocytophaga sputigena
JCM number: 12967 <-- DSM 7273 <-- ATCC 33612 <-- A. C. R. Tanner <-- S. C. Holt 4 <-- S. S. Socransky.
Source: Periodontal lesions [5885].
Biochemistry/Physiology: [5885,5886].
G+C (mol%): 34 (Tm) [5885].
Phylogeny: 16S rRNA gene (AB671762, X67609) [6083].
Genome sequence: ABZV00000000.
Quality control by DNA sequences: 16S rRNA gene (AB671762).
Fee category: Domestic, A or C; Overseas, A or C.
Leptotrichia buccalis
JCM number: 12969 <-- DSM 1135 <-- NCTC 10249 <-- A. Howell, Jr. C-1013-b.
Source: Supragingival calculus.
Phylogeny: 16S rRNA gene (X90831).
Genome sequence: CP001685 [8226].
Quality control by DNA sequences: 16S rRNA gene (AB818949).
  
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Publication(s) using this strain [A08289, A10314]
Fee category: Domestic, A or C; Overseas, A or C.
Parvimonas micra
JCM number: 12970 <-- DSM 20468 <-- VPI 5464 <-- A. R. Prévot.
Source: Human purulent pleurisy.
Biochemistry/Physiology: [5879].
G+C (mol%): 27-29 [5879].
Phylogeny: 16S rRNA gene (AF542231).
Genome sequence: ABEE00000000.
Quality control by DNA sequences: 16S rRNA gene (AB729072).
Fee category: Domestic, A or C; Overseas, A or C.
Veillonella parvula
JCM number: 12972 <-- DSM 2008 <-- ATCC 10790 <-- J. E. Faber <-- A. R. Prévot Te3.
Source: Intestinal tract [5874].
Serotype: VI [5874].
G+C (mol%): 38 (Tm) [5874].
DNA-DNA relatedness: [5874].
Phylogeny: 16S rRNA gene (AB538437, AY995767).
Genome sequence: CP001820 [8227].
Quality control by DNA sequences: 16S rRNA gene (AB538437).
Publication(s) using this strain [A10218]
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides plebeius
JCM number: 12973 <-- M. Kitahara M12.
Source: Human feces [6132].
Biochemistry/Physiology: [6132].
Fatty acid: [6132].
Quinone: MK-10, MK-11 [6525].
G+C (mol%): 43.9 (HPLC) [6132].
DNA-DNA relatedness: [6132].
Phylogeny: 16S rRNA gene (AB200217) [6132,8440,8884], dnaJ (AB619885) [8884], gyrB (AB619923) [8884], hsp60 (AB510684) [8355,8440,8884], recA (AB619961) [8884], rpoB (AB619999) [8884].
Genome sequence: ABQC00000000.
More information: Association with Japanese cedar pollinosis [7496].
Quality control by DNA sequences: 16S rRNA gene (AB200217), dnaJ (AB619885), gyrB (AB619923), hsp60 (AB510684), recA (AB619961), rpoB (AB619999).
Publication(s) using this strain [B05106, B06146, A08012, A08170, A10209, A10221, A11289]
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides coprocola
JCM number: 12979 <-- M. Kitahara M16.
Source: Human feces [6132].
Biochemistry/Physiology: [6132].
Fatty acid: [6132].
Quinone: MK-10, MK-11 [6525].
G+C (mol%): 42.4 (HPLC) [6132].
DNA-DNA relatedness: [6132].
Phylogeny: 16S rRNA gene (AB200224) [6132,8440,8884], dnaJ (AB619866) [8884], gyrB (AB619904) [8884], hsp60 (AB510671) [8355,8440,8884], recA (AB619942) [8884], rpoB (AB619980) [8884].
Genome sequence: ABIY00000000.
More information: Association with Japanese cedar pollinosis [7496].
Quality control by DNA sequences: 16S rRNA gene (AB200224), dnaJ (AB619866), gyrB (AB619904), hsp60 (AB510671), recA (AB619942), rpoB (AB619980).
Publication(s) using this strain [B05106, B06146, A08007, A08012, A08170, A10209, A10221, A11289]
Fee category: Domestic, A or C; Overseas, A or C.
Halobiforma lacisalsi
JCM number: 12983 <-- CGMCC 1.3738 <-- X.-W. Xu AJ5.
Source: Ayakekum salt lake in Xinjiang, China [6133].
Biochemistry/Physiology: [6133].
Polar lipid: [6133].
G+C (mol%): 64.9 (Tm) [6133].
DNA-DNA relatedness: [6133].
Phylogeny: 16S rRNA gene (AY277582) [6133,8352], rpoB' (AB477153) [8352].
Genome sequence: AGFZ00000000 [8930].
Publication(s) using this strain [C05098, A07100, A07262, A10175]
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides eggerthii
JCM number: 12986 <-- CCUG 9559 <-- NCTC 11155 <-- ATCC 27754 <-- L. V. Holdeman VPI T5-42B-1.
Source: Human feces.
Biochemistry/Physiology: [6525].
Fatty acid: [6525].
Quinone: MK-10, MK-11 [6525].
G+C (mol%): 44.2 (HPLC) [6525].
Phylogeny: 16S rRNA gene (AB050107, AB510700, L16485) [3513,8440,8884], dnaJ (AB619870) [8884], gyrB (AB619908) [8884], hsp60 (AB510675) [8355,8440,8884], recA (AB619946) [8884], rpoB (AB619984) [8884].
Genome sequence: ABVO00000000.
More information: Association with Japanese cedar pollinosis [7496].
Quality control by DNA sequences: 16S rRNA gene (AB510700), dnaJ (AB619870), gyrB (AB619908), hsp60 (AB510675), recA (AB619946), rpoB (AB619984).
Publication(s) using this strain [B06146, A08007, A08012, A10209, A10221, A11289]
Fee category: Domestic, A or C; Overseas, A or C.
Campylobacter showae
JCM number: 12989 <-- CCUG 30254 <-- F. E. Dewhirst <-- N. Goto SU A4 <-- Y. Etoh.
Source: Human gingival crevice [5882].
Biochemistry/Physiology: [5882].
G+C (mol%): 44-46 (HPLC) [5882].
DNA-DNA relatedness: [5882].
Phylogeny: 16S rRNA (L06974) [5882], 16S rRNA gene (DQ174155).
Genome sequence: ACVQ00000000.
Fee category: Domestic, A or C; Overseas, A or C.
Fusobacterium nucleatum subsp. polymorphum
JCM number: 12990 <-- CCUG 9126 <-- NCTC 10562 <-- ATCC 10953 <-- H. Hoffman 555A.
Source: Human gingiva, inflamed, adult male.
DNA-DNA relatedness: [3158].
Phylogeny: 16S rRNA gene (AB550231, AF287812, GQ301039, X55402) [3158].
Other taxonomic data: PAGE protein patterns [3158].
Genome sequence: AARG00000000.
Quality control by DNA sequences: 16S rRNA gene (AB550231).
  
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Publication(s) using this strain [A10297, A10305]
Fee category: Domestic, A or C; Overseas, A or C.
Fusobacterium periodonticum
JCM number: 12991 <-- CCUG 14345 <-- J. Slots <-- ATCC 33693 <-- J. Slots EK1-15.
Source: Advanced periodontitis lesions of patient with insulin-dependent diabetes mellitus [5887].
Biochemistry/Physiology: [5887].
Fatty acid: [5887].
G+C (mol%): 28 (Tm) [5887].
DNA-DNA relatedness: [5887].
Phylogeny: 16S rRNA gene (GQ301043, X55405) [3166].
Genome sequence: ACJY00000000.
Fee category: Domestic, A or C; Overseas, A or C.
Streptococcus oralis
JCM number: 12997 <-- CCUG 13229 <-- NCTC 11427 <-- P. H. A. Sneath PB182 <-- J. Carlsson LVG/1.
Source: Human mouth [5883].
Biochemistry/Physiology: [5878,5883].
Cell wall: Lys direct [5878].
Serology: [5878].
G+C (mol%): 41 [5878].
DNA-DNA relatedness: [5878].
Phylogeny: 16S rRNA gene (AY485602).
Genome sequence: ADMV00000000.
Publication(s) using this strain [A10299]
Fee category: Domestic, A or C; Overseas, A or C.
Mycobacterium parascrofulaceum
JCM number: 13015 <-- KCTC 9979 <-- C. Y. Turenne HSC-68 <-- J. N. Wolfe.
Source: Cervix biopsy, Manitoba, Canada [5933].
Biochemistry/Physiology: [5933].
Phylogeny: 16S rRNA gene (AY337273, GQ153273) [5933].
Other taxonomic data: Mycolic acid [5933].
Genome sequence: ADNV00000000.
Fee category: Domestic, A or C; Overseas, A or C.
Mycobacterium vanbaalenii
JCM number: 13017 <-- KCTC 9966 <-- S. B. Kim <-- D. D. Paine PYR-1.
Source: Sediment in an oil-contaminated site in Redfish Bay, TX, USA [5928].
Biochemistry/Physiology: [5928].
Fatty acid: [5928].
DNA-DNA relatedness: [5928].
Phylogeny: 16S rRNA gene & 16S-23S rRNA ITS (X84977) [5928].
Genome sequence: CP000511.
More information: Degrades polycyclic aromatic hydrocarbons [6048,6049].
Publication(s) using this strain [A08296, A10084, A10245]
Fee category: Domestic, A or C; Overseas, A or C.
Methanococcus maripaludis
JCM number: 13030 <-- DSM 14266 <-- J. A. Leigh <-- W. B. Witman S2.
Source: Sediment on the bank of the Latham River, near Jekyll Island, GA, USA [4162].
Biochemistry/Physiology: [4162].
G+C (mol%): 34.4 (HPLC) [4162].
Genome sequence: BX950229 [5949].
Publication(s) using this strain [A07262, A10073]
Fee category: Domestic, B; Overseas, B.
Paludibacter propionicigenes
JCM number: 13257 <-- A. Ueki WB4.
Source: Rice plant residue in anoxic rice-field soil, Japan [6249].
Biochemistry/Physiology: [6249].
Fatty acid: a-C15:0, C15:0, a-C17:0 [6249].
Quinone: MK-8(H4) [6249].
G+C (mol%): 39.3 (HPLC) [6249].
Phylogeny: 16S rRNA gene (AB078842) [6249].
Genome sequence: CP002345 [8519].
Publication(s) using this strain [C06160, A08170, B09097]
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides intestinalis
JCM number: 13265 <-- M. Kitahara 341 <-- M. Matsumoto 341.
Source: Human feces [6250].
Biochemistry/Physiology: [6250].
Fatty acid: a-C15:0, 3OH-i-C17:0 [6250].
G+C (mol%): 44 (HPLC) [6250].
DNA-DNA relatedness: [6250].
Phylogeny: 16S rRNA gene (AB214328) [6250,8440,8884], dnaJ (AB619880) [8884], gyrB (AB619918) [8884], hsp60 (AB510680) [8355,8440,8884], recA (AB619956) [8884], rpoB (AB619994) [8884].
Genome sequence: ABJL00000000.
More information: Association with Japanese cedar pollinosis [7496].
Quality control by DNA sequences: 16S rRNA gene (AB214328), dnaJ (AB619880), gyrB (AB619918), hsp60 (AB510680), recA (AB619956), rpoB (AB619994).
Publication(s) using this strain [B06072, A07269, A08012, A08170, A09223, A10209, A10221, A11280, A11289, B12117]
Fee category: Domestic, A or C; Overseas, A or C.
Bacillus macauensis
JCM number: 13285 <-- H. H. P. Fang ZFHKF-1 <-- DIT030428.
Source: Influent of a drinking water treatment plant in Macau, China [6272].
Biochemistry/Physiology: [6272].
Cell wall: meso-A2pm [6272].
Fatty acid: [6272].
Quinone: MK-7 [6272].
G+C (mol%): 40.8 (HPLC) [6272], 40.6 (Genome sequence) [9211].
Phylogeny: 16S rRNA gene (AY373018) [6272].
Genome sequence: AKKV00000000 [9211].
Publication(s) using this strain [C06157, A09052, A12276]
Fee category: Domestic, A or C; Overseas, A or C.
Aeromicrobium marinum
JCM number: 13314 <-- LMG 21768 <-- T. Brinkhoff T2.
Source: Surface water of the German Wadden Sea [6036].
Cell wall: LL-A2pm [6036].
Fatty acid: [6036].
Quinone: MK-9(H4) [6036].
G+C (mol%): 70.6 (HPLC) [6036].
DNA-DNA relatedness: [6036].
Phylogeny: 16S rRNA gene (AY166703) [6036].
Genome sequence: CM001024.
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides finegoldii
JCM number: 13345 <-- M. Kitahara 199 <-- M. Matsumoto 199.
Source: Human feces [6336].
Biochemistry/Physiology: [6336].
Fatty acid: a-C15:0 [6336].
G+C (mol%): 42 (HPLC) [6336].
DNA-DNA relatedness: [6336].
Phylogeny: 16S rRNA gene (AB222699) [6336,8440,8884], dnaJ (AB619873) [8884], gyrB (AB619911) [8884], hsp60 (AB510676) [8355,8440,8884], recA (AB619949) [8884], rpoB (AB619987) [8884].
Genome sequence: ABXI00000000.
More information: Association with Japanese cedar pollinosis [7496].
Quality control by DNA sequences: 16S rRNA gene (AB222699), dnaJ (AB619873), gyrB (AB619911), hsp60 (AB510676), recA (AB619949), rpoB (AB619987).
Publication(s) using this strain [B06186, A08012, A08170, A10209, A10221, A11289]
Fee category: Domestic, A or C; Overseas, A or C.
Parabacteroides johnsonii
JCM number: 13406 <-- M. Sakamoto M-165 <-- M. Kitahara M-165.
Source: Human feces [6609].
Biochemistry/Physiology: [6609].
Fatty acid: [6609].
Quinone: MK-9, MK-10 [6609].
G+C (mol%): 47.6 (HPLC) [6609].
DNA-DNA relatedness: [6609].
Phylogeny: 16S rRNA gene (AB261128) [6609], hsp60 (AB547569) [8355].
Genome sequence: ABYH00000000.
More information: Closely related to Parabacteroides merdae strains, with 98% sequence similarity [6609].
Quality control by DNA sequences: 16S rRNA gene (AB261128), hsp60 (AB547569).
Publication(s) using this strain [B07123, A08170, A10221]
Fee category: Domestic, A or C; Overseas, A or C.
Ignisphaera aggregans
JCM number: 13409 <-- T. Niederberger AQ1.S1.
Source: Terrestrial, near-neutral hot spring in Kuirau Park, Rotorua, New Zealand [6337].
Biochemistry/Physiology: [6337].
G+C (mol%): 52.9 (Tm) [6337].
Phylogeny: 16S rRNA gene (DQ060321) [6337].
Genome sequence: CP002098 [8333].
Publication(s) using this strain [C06187, A09212]
Fee category: Domestic, B; Overseas, B.
Methanobrevibacter ruminantium
JCM number: 13430 <-- DSM 1093 <-- R. S. Wolfe <-- M. P. Bryant M1 <-- P. H. Smith and R. E. Hungate.
Phylogeny: 16S rRNA catalog [4189], 16S rRNA gene (AY196666).
Genome sequence: CP001719 [8434].
More information: Proposed neotype strain [4189].
Publication(s) using this strain [A07262]
Fee category: Domestic, B; Overseas, B.
Prevotella marshii
JCM number: 13450 <-- CCUG 50419 <-- J. Downes <-- W. G. Wade E9.34.
Source: Human oral cavity [6175].
Biochemistry/Physiology: [6175].
Fatty acid: a-C15:0, i-C15:0, C15:0, i-C14:0 [6175].
G+C (mol%): 51 (HPLC) [6175].
DNA-DNA relatedness: [6175].
Phylogeny: 16S rRNA gene (AB547691, AF481227) [6175], hsp60 (AB547613) [8355].
Genome sequence: AEEI00000000.
Quality control by DNA sequences: 16s rRNA gene (AB547691), hsp60 (AB547613).
Publication(s) using this strain [B07149, A08170, A10221]
Fee category: Domestic, A or C; Overseas, A or C.
Prevotella copri
JCM number: 13464 <-- H. Hayashi CB7.
Source: Human feces [6887].
Biochemistry/Physiology: [6887].
Fatty acid: C16:0, C18:1ω9c, a-C15:0 [6887].
Quinone: MK-10, MK-11, MK-12, MK-13 [6887].
G+C (mol%): 45.3 (HPLC) [6887].
Phylogeny: 16S rRNA gene (AB064923, AB649279) [6887], hsp60 (AB547598) [8355].
Genome sequence: ACBX00000000.
Quality control by DNA sequences: 16S rRNA gene (AB649279), hsp60 (AB547598).
Publication(s) using this strain [B07149, A08170, A10221]
Fee category: Domestic, A or C; Overseas, A or C.
Anaerostipes caccae
JCM number: 13470 <-- DSM 14662 <-- S. Duncan L1-92.
Source: Human feces [6205].
Biochemistry/Physiology: [6205].
G+C (mol%): 46.0 (HPLC) [6205].
Phylogeny: 16S rRNA gene (AJ270487) [6205].
Genome sequence: ABAX00000000.
More information: Butyrate-producing bacterium [6205].
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides dorei
JCM number: 13471 <-- M. Sakamoto 175 <-- M. Matsumoto 175.
Source: Human feces [6400].
Biochemistry/Physiology: [6400].
Fatty acid: [6400].
G+C (mol%): 43 (HPLC) [6400].
DNA-DNA relatedness: [6400].
Phylogeny: 16S rRNA gene (AB242142) [6400,8440,8884], dnaJ (AB619869) [8884], gyrB (AB619907) [8884], hsp60 (AB510674) [8355,8440,8884], recA (AB619945) [8884], rpoB (AB619983) [8884].
Genome sequence: ABWZ00000000.
More information: Association with Japanese cedar pollinosis [7496].
Quality control by DNA sequences: 16S rRNA gene (AB242142), dnaJ (AB619869), gyrB (AB619907), hsp60 (AB510674) [8355,8440], recA (AB619945), rpoB (AB619983).
  
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Publication(s) using this strain [B06084, A08012, A08170, A10209, A10221, B11209, A11280, A11289]
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides coprosuis
JCM number: 13475 <-- CCUG 50528 <-- T. R. Whitehead PC 139.
Source: Swine-manure storage pits [6209].
Biochemistry/Physiology: [6209].
Fatty acid: C15:0, i-C15:0, a-C15:0, C16:0, i-C17:0, a-C17:0 [6209].
G+C (mol%): 36.4 (Tm) [6209].
Phylogeny: 16S rRNA gene (AB510699, AF319778) [6209,8440,8884], dnaJ (AB619868) [8884], gyrB (AB619906) [8884], hsp60 (AB510673) [8355,8440,8884], recA (AB619944) [8884], rpoB (AB619982) [8884].
Genome sequence: AFFW00000000 [8624].
Quality control by DNA sequences: 16S rRNA gene (AB510699), dnaJ (AB619868), gyrB (AB619906), hsp60 (AB510673), recA (AB619944), rpoB (AB619982).
Publication(s) using this strain [A08170, A10209, A10221, A11289]
Fee category: Domestic, A or C; Overseas, A or C.
Exiguobacterium sibiricum
JCM number: 13490 <-- D. F. Rodrigues 255-15 <-- T. Vishnivetskaya.
Source: Siberian permafrost [6588].
Biochemistry/Physiology: [6588].
Cell wall: L-Lys-Gly (type A3α) [6588].
Fatty acid: [6588].
Quinone: MK-7 [6588].
G+C (mol%): 47.7 [6588].
Genome sequence: CP001022 ((http://expasy.org/sprot/hamap/EXIS2.html.
Publication(s) using this strain [C08227]
Fee category: Domestic, A or C; Overseas, A or C.
"Thermococcus onnurineus"
JCM number: 13517 <-- J.-H. Lee NA1.
Source: Deep-sea hydrothermal vent area (depth, 1650 m) within the Papua New Guinea-Australia-Canada-Manus (PACMANUS) field [7584].
Biochemistry/Physiology: [7584].
G+C (mol%): 52 (Tm) [7584].
DNA-DNA relatedness: [7584].
Phylogeny: 16S rRNA gene (DQ167232) [7584].
Genome sequence: CP000855 [7579].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 08242.
Publication(s) using this strain [A09250]
Fee category: Domestic, B; Overseas, B.
Arthrobacter arilaitensis
JCM number: 13566 <-- CIP 108037 <-- F. Irlinger Re117.
Source: Surface of Reblochon cheese [6246].
Biochemistry/Physiology: [6246].
Cell wall: Lys, Ala, Glu; Gal, Glc, Rib, Man [6246].
DNA-DNA relatedness: [6246].
Phylogeny: 16S rRNA gene (AJ609628) [6246].
Genome sequence: FQ311875 [8714].
Publication(s) using this strain [A08276]
Fee category: Domestic, A or C; Overseas, A or C.
Mycobacterium abscessus subsp. abscessus
JCM number: 13569 <-- CIP 104536 <-- V. Vincent 14 042 0023 <-- ATCC 19977 <-- P. Hauduroy L948 <-- M. Moore.
Biochemistry/Physiology: [5473,8776].
DNA-DNA relatedness: [5473,8776].
Phylogeny: 16S rRNA gene (AF480592, AJ536038, AY457071, X82235) [5188,7312,7733], rpoB (AY147164) [8692].
Other taxonomic data: Mycolic acid [8776].
Taxonomy: [5473,8775,8776].
Genome sequence: NC_010397.
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 08524.
Publication(s) using this strain [A11251]
Fee category: Domestic, A or C; Overseas, A or C.
Segniliparus rotundus
JCM number: 13578 <-- CIP 108378 <-- W. R. Butler CDC 1076.
Source: Human sputum [6248].
Biochemistry/Physiology: [6248].
Cell wall: meso-A2pm [6248].
Fatty acid: [6248].
G+C (mol%): 68 (Tm) [6248].
DNA-DNA relatedness: [6248].
Phylogeny: 16S rRNA gene (AY608918) [6248].
Other taxonomic data: Mycolic acid [6248].
Genome sequence: CP001958 [8561].
Fee category: Domestic, A or C; Overseas, A or C.
Segniliparus rugosus
JCM number: 13579 <-- CIP 108380 <-- W. R. Butler CDC 945.
Source: Human sputum [6248].
Biochemistry/Physiology: [6248].
Cell wall: meso-A2pm [6248].
Fatty acid: [6248].
G+C (mol%): 72 (Tm) [6248].
DNA-DNA relatedness: [6248].
Phylogeny: 16S rRNA gene (AY608920) [6248].
Other taxonomic data: Mycolic acid [6248].
Genome sequence: ACZI00000000 [8953].
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides salanitronis
JCM number: 13657 <-- M. Sakamoto BL78 <-- P. T. N. Lan BL78.
Source: Chicken cecum [6525].
Biochemistry/Physiology: [6525].
Fatty acid: a-C15:0, i-C15:0, 3OH-C16:0, 3OH-i-C17:0 [6525].
Quinone: MK-11, MK-12 [6525].
G+C (mol%): 46.9 (HPLC) [6525].
DNA-DNA relatedness: [6525].
Phylogeny: 16S rRNA gene (AB253731) [6525,8440,8884], dnaJ (AB619888) [8884], gyrB (AB619926) [8884], hsp60 (AB510687) [8355,8440,8884], recA (AB619964) [8884], rpoB (AB620002) [8884].
Genome sequence: CP002530 [8622].
Quality control by DNA sequences: 16S rRNA gene (AB253731), dnaJ (AB619888), gyrB (AB619926), hsp60 (AB510687), recA (AB619964), rpoB (AB620002).
Publication(s) using this strain [B06146, A08170, A10209, A10221, A11289]
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides coprophilus
JCM number: 13818 <-- H. Hayashi CB42.
Source: Human feces [6928].
Biochemistry/Physiology: [6928].
Fatty acid: a-C15:0, C16:0, 3OH-i-C17:0, C18:1ω9c [6928].
G+C (mol%): 44.7 (HPLC) [6928].
Phylogeny: 16S rRNA gene (AB260026) [6928,8440,8884], dnaJ (AB619867) [8884], gyrB (AB619905) [8884], hsp60 (AB510672) [8355,8440,8884], recA (AB619943) [8884], rpoB (AB619981) [8884].
Genome sequence: ACBW00000000.
More information: Association with Japanese cedar pollinosis [7496].
Quality control by DNA sequences: 16S rRNA gene (AB260026), dnaJ (AB619867), gyrB (AB619905), hsp60 (AB510672), recA (AB619943), rpoB (AB619981).
Publication(s) using this strain [C07046, A08012, A08170, A10209, A10221, A11289]
Fee category: Domestic, A or C; Overseas, A or C.
Aspergillus oryzae var. brunneus
JCM number: 13832 <-- RIB 40 (NRIB) <-- H. Murakami 40.
Source: Horsebean [6325].
Locality: 'Maruka' soy sauce factory, Mimaki-mura, Kuse-gun, Kyoto, Japan [6325].
Phylogeny: A fungal phylogeny based on 82 complete genomes [8242].
Genome sequence: Project ID: 20809 [6332].
More information: Original strain number 40 [6325]; Cloning/sequencing of Taka-amylase A (TAA) gene [6327], acetamidase gene [6328], acid protease gene [6330], and enolase gene [6331]; Site-directed mutagenesis of TAA [6329].
Production: glucoamylase [6326].
Assay: aureobasidin A (AbA-sensitive), using the strain RIB 40 (= JCM 13832) [8156].
Fee category: Domestic, A or C; Overseas, A or C.
Pseudonocardia dioxanivorans
JCM number: 13855 <-- DSM 44775 <-- S. Mahendra CB1190 <-- R. Parales.
Source: 1,4-Dioxane-contaminated industrial sludge, Darlington, SC, USA [6295].
Biochemistry/Physiology: [6295].
Cell wall: meso-A2pm (type A1γ) [6295].
Fatty acid: [6295].
Quinone: MK-8(H4), MK-7(H4) [6295].
G+C (mol%): 74 (HPLC) [6295].
Phylogeny: 16S rRNA gene (AY340622) [6295], fusA (EU722536), gyrB (EU722570), lepA (EU722595), rpoB (EU722625).
Genome sequence: CP002593, plasmids pPSED01 (CP002594), pPSED02 (CP002595, CP002596, CP002597), pPSED03 (CP002598) [8999].
More information: Degrades 1,4-dioxane [6295].
Fee category: Domestic, A or C; Overseas, A or C.
Salinispora tropica
JCM number: 13857 <-- DSM 44818 <-- P. R. Jensen CNB-440.
Source: Coarse sand off the Bahamas [6298].
Biochemistry/Physiology: [6298].
Cell wall: meso-A2pm; N-glycolyl Mur; Gal, Xyl [6298].
Fatty acid: [6298].
Quinone: MK-9(H4) [6298].
Polar lipid: DPG, PE, PG, PI [6298].
DNA-DNA relatedness: [6298].
Phylogeny: 16S rRNA gene (AY040617) [6298].
Other taxonomic data: 16S rRNA gene spacer region (AY371895) [6298].
Genome sequence: CP000667 ((http://genome.jgi-psf.org/finished_microbes/saltr/saltr.home.html [9266].
Fee category: Domestic, A or C; Overseas, A or C.
Prevotella bergensis
JCM number: 13869 <-- CCUG 51224 <-- J. Downes <-- T. Hofstad 94067913.
Source: Human soft tissue abscess, Bergen, Norway [6310].
Biochemistry/Physiology: [6310].
Fatty acid: [6310].
G+C (mol%): 48 (HPLC) [6310].
DNA-DNA relatedness: [6310].
Phylogeny: 16S rRNA gene (AB547672, AY350613) [6310], hsp60 (AB547593) [8355].
Genome sequence: ACKS00000000.
Quality control by DNA sequences: 16S rRNA gene (AB547672), hsp60 (AB547593).
Publication(s) using this strain [A10221]
Fee category: Domestic, A or C; Overseas, A or C.
Halopiger xanaduensis
JCM number: 14033 <-- A. Ventosa SH-6.
Source: Sediment of saline Lake Shangmatala in Inner Mongolia, China [6995].
Biochemistry/Physiology: [6995].
Polar lipid: [6995].
G+C (mol%): 63.1 (Tm) [6995].
Phylogeny: 16S rRNA gene (AM268114, AB477974) [6995,8352], rpoB' (AB477173) [8352].
Genome sequence: CP002839, plasmids pHALXA01 (CP002840), pHALXA (CP002841), pHALXA (CP002842) [9059].
Publication(s) using this strain [C07052, A09250, A10175, A12159]
Fee category: Domestic, A or C; Overseas, A or C.
Halorhabdus tiamatea
JCM number: 14471 <-- A. Antunes SARL4B.
Source: Brine-sediment interface of the Shaban Deep in the northern Red Sea [7207].
Biochemistry/Physiology: [7207].
Quinone: MK-8(VIII-H2) [7207].
Polar lipid: [7207].
G+C (mol%): 61.7 (HPLC) [7207].
DNA-DNA relatedness: [7207].
Phylogeny: 16S rRNA gene (EF127229) [7207].
Genome sequence: AFNT00000000 [8750].
Publication(s) using this strain [C08082, B11162]
Fee category: Domestic, A or C; Overseas, A or C.
Slackia heliotrinireducens
JCM number: 14554 <-- CCUG 47954 <-- CIP 108017 <-- DSM 20476 <-- ATCC 29202 <-- G. W. Lanigan RHS 1.
Source: Rumen contents of sheep [6727].
Morphology: [6727].
Biochemistry/Physiology: [4643,6680,6727].
Fatty acid: [6680].
G+C (mol%): 36.1 [6727], 34-36 [6680], 61 (HPLC) [4643].
Phylogeny: 16S rRNA gene (AB559823, AF101241) [4643].
Genome sequence: CP001684 [8405].
Quality control by DNA sequences: 16S rRNA gene (AB559823).
Publication(s) using this strain [B08036, A10013, B10188]
Fee category: Domestic, A or C; Overseas, A or C.
Haloplasma contractile
JCM number: 14575 <-- A. Antunes SSD-17B.
Source: Hypersaline brine-sediment interface of the Shaban Deep, Red Sea [7336].
Biochemistry/Physiology: [7336].
Fatty acid: [7336].
Quinone: MK-4 [7336].
Polar lipid: [7336].
G+C (mol%): 33.6 (HPLC) [7336].
Phylogeny: 16S rRNA gene (EF999972) [7336].
Genome sequence: [8749].
Publication(s) using this strain [C08167]
Fee category: Domestic, B; Overseas, B.
Halalkalicoccus jeotgali
JCM number: 14584 <-- S. W. Roh B3.
Source: Shrimp jeotgal, traditional Korean fermented seafood [7127].
Biochemistry/Physiology: [7127].
Polar lipid: [7127].
G+C (mol%): 63.2 (HPLC) [7127].
Phylogeny: 16S rRNA gene (EF077632, AB477223) [7127,8352], rpoB' (AB477140) [8352].
Genome sequence: CP002062, plasmid 1 (CP002063), plasmid 2 (CP002064), plasmid 3 (CP002065), plasmid 4 (CP002066), plasmid 5 (CP002067), plasmid 6 (CP002068) [8377].
Publication(s) using this strain [B07101, A09250, B10099, A10175]
Fee category: Domestic, A or C; Overseas, A or C.
Methylophaga aminisulfidivorans
JCM number: 14647 <-- S. W. Kim MP.
Source: Seawater sample collected from Mokpo, Republic of Korea [7099].
Biochemistry/Physiology: [7099].
Fatty acid: C16:0, C16:1ω7c [7099].
Quinone: Q-8 [7099].
Polar lipid: PE, PG [7099].
G+C (mol%): 44.9 (Tm) [7099], 43.5 (genome sequence) [9297].
DNA-DNA relatedness: [7099].
Phylogeny: 16S rRNA gene (DQ463161) [7099].
Genome sequence: AFIG00000000 [9297].
Publication(s) using this strain [C07086]
Fee category: Domestic, A or C; Overseas, A or C.
Ruminococcus albus
JCM number: 14654 <-- DSM 20455 <-- G. Fuchs <-- M. Bryant 7.
Source: Bovine rumen.
Phylogeny: 16S rRNA gene (AB538438, AY445600).
Genome sequence: CP002403 [8770].
Quality control by DNA sequences: 16S rRNA gene (AB538438).
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 07668, JGD 07669.
Publication(s) using this strain [A10089]
Fee category: Domestic, A or C; Overseas, A or C.
Blautia hansenii
JCM number: 14655 <-- DSM 20583 <-- ATCC 27752 <-- L. V. Holdeman VPI C7-24.
Source: Human feces.
Biochemistry/Physiology: [3530,7395].
G+C (mol%): 39-42 [3530].
Phylogeny: 16S rRNA gene (AB534168, M59114).
Genome sequence: ABYU00000000.
Quality control by DNA sequences: 16S rRNA gene (AB534168).
Fee category: Domestic, A or C; Overseas, A or C.
Blautia hydrogenotrophica
JCM number: 14656 <-- DSM 10507 <-- A. Bernalier S5a33.
Source: Human feces [6755].
Biochemistry/Physiology: [6755,7395].
G+C (mol%): 45.2 (HPLC) [6755].
Phylogeny: 16S rRNA gene (X95624).
Genome sequence: ACBZ00000000.
Fee category: Domestic, A or C; Overseas, A or C.
Pseudomonas aeruginosa
JCM number: 14847 <-- CIP 104116 <-- ATCC 15692 <-- B. W. Holloway 1C <-- P. Rountree PAO1.
Source: Infected wound.
Phylogeny: 16S rRNA gene (AF094715).
Genome sequence: AE004091 [7121].
Quality control by DNA sequences: 16S rRNA (AB626118).
Production: pyochelin [7119,7120] and pyocyanine [7119].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 06292.
Publication(s) using this strain [A11027]
Fee category: Domestic, A or C; Overseas, A or C.
Paraprevotella xylaniphila
JCM number: 14860 <-- M. Morotomi B3 (=YIT 11841).
Source: Human feces [7782].
Biochemistry/Physiology: [7782].
Fatty acid: [7782].
Quinone: MK-10, MK-11 [7782].
G+C (mol%): 49.0 (HPLC) [7782].
Phylogeny: 16S rRNA gene (AB331897, AB547652) [7782], hsp60 (AB547572) [8355].
Genome sequence: AFBR00000000.
Quality control by DNA sequences: 16S rRNA gene (AB547652), hsp60 (AB547572).
Publication(s) using this strain [C09078, A10221]
Fee category: Domestic, A or C; Overseas, A or C.
Catenulispora acidiphila
JCM number: 14897 <-- NBRC 102108 <-- NRRL B-24433 <-- L. Cavaletti <-- E. Busti ID139908.
Source: Soil from a wooded area, Gerenzano, Italy [7050].
Biochemistry/Physiology: [7050].
Cell wall: LL-A2pm, Gly, Glu, Ala (type A3γ) [7050].
Fatty acid: [7050].
Quinone: MK-9(H6), MK-9(H4) [7050].
Polar lipid: PG, DPG, PI, PIMs [7050].
G+C (mol%): 71.5 (HPLC) [7050].
Phylogeny: 16S rRNA gene (AJ865857) [7050].
Genome sequence: CP001700 [8210].
Fee category: Domestic, A or C; Overseas, A or C.
Stackebrandtia nassauensis
JCM number: 14905 <-- NBRC 102104 <-- NRRL B-16338 <-- M. P. Lechevalier LLR-40K-21.
Source: Soil on the road side, Nassau, the Bahamas [7048].
Biochemistry/Physiology: [7048].
Cell wall: meso-A2pm; N-glycolyl Mur; Ino, Rib [7048].
Fatty acid: [7048].
Quinone: MK-10(H4), MK-10(H6), MK-11(H4), MK-11(H6) [7048].
Polar lipid: PG, DPG [7048].
G+C (mol%): 72.4 (HPLC) [7048].
Phylogeny: 16S rRNA gene (AY650268) [7048].
Genome sequence: CP001778 [8213].
Fee category: Domestic, A or C; Overseas, A or C.
Symbiobacterium thermophilum
JCM number: 14929 <-- K. Ueda strain T.
Source: Compost in Hiroshima, Japan [7086].
Biochemistry/Physiology: [4824,7086].
Fatty acid: [7086].
Quinone: MK-6 [4824].
G+C (mol%): 65.1 (Tm) [7086], 68.7 (Genome sequence) [7088].
Phylogeny: 16S rRNA gene (AB004913) [4824].
Genome sequence: AP006840 [7088].
More information: This strain was initially isolated as a co-culture with a supporting Bacillus strain [7086]. Later, it was established as an independent culture from the supporting strain; Growth is stimulated by CO2 supply [7089].
Production: tryptophanase and β-tyrosinase in association with Bacillus strain S [7086].
Fee category: Domestic, A or C; Overseas, A or C.
Elusimicrobium minutum
JCM number: 14958 <-- O. Geissinger Pei191.
Source: Sterile-filtered gut homogenate of humus-feeding scarab beetle larva [7682].
Biochemistry/Physiology: [7682].
Phylogeny: 16S rRNA gene (AM490846) [7682].
Genome sequence: CP001055 [7683].
More information: Representing Termite Group 1 phylum [7682].
Publication(s) using this strain [C09009]
Fee category: Domestic, B; Overseas, B.
Caloramator australicus
JCM number: 15081 <-- C. D. Ogg and B. K. C. Patel RC3.
Source: Microbial mat sample from the outflow of a Great Artesian Basin bore in Queensland, Australia [7542].
Biochemistry/Physiology: [7542].
G+C (mol%): 34 (Tm) [7542].
Phylogeny: 16S rRNA gene (EU409943) [7542].
Genome sequence: CAKP00000000 [9298].
Publication(s) using this strain [C09149, A09250, A11258]
Fee category: Domestic, B; Overseas, B.
Odoribacter splanchnicus
JCM number: 15291 <-- CCUG 21054 A <-- CCM 6029 <-- H. Werner 1651/6.
Source: Abdominal abscess.
Biochemistry/Physiology: [7210].
Phylogeny: 16S rRNA gene (AB547649, L16496), hsp60 (AB547565) [8355].
Genome sequence: CP002544 [8623].
Quality control by DNA sequences: 16S rRNA gene (AB547649), hsp60 (AB547565).
Publication(s) using this strain [B09067, A10221]
Fee category: Domestic, A or C; Overseas, A or C.
Mycobacterium abscessus subsp. bolletii
JCM number: 15297 <-- CCUG 50184 <-- M. Drancourt strain BD.
Source: Sputum [7238].
Biochemistry/Physiology: [7238,8776].
Fatty acid: [7238].
G+C (mol%): 63±2 (HPLC) [7238].
DNA-DNA relatedness: [8776].
Phylogeny: 16S rRNA gene (AY859681), recA (AY859687), hsp65 (AY859675), sodA (AY862403) [7238].
Other taxonomic data: Mycolic acid [8776].
Taxonomy: [8775,8776].
Genome sequence: AHAS00000000 [9066].
Publication(s) using this strain [A11251]
Fee category: Domestic, A or C; Overseas, A or C.
Acidimicrobium ferrooxidans
JCM number: 15462 <-- NBRC 103882 <-- DSM 10331 <-- P. R. Norris strain ICP.
Source: Icelandic geothermal site [7306].
Biochemistry/Physiology: Ferrous iron oxidation [7306].
G+C (mol%): 67.3 (Tm) [7306].
Phylogeny: 16S rRNA gene (U75647).
Genome sequence: CP001631 [7971].
Publication(s) using this strain [A09250, B11091]
Fee category: Domestic, A or C; Overseas, A or C.
Alishewanella jeotgali
JCM number: 15561 <-- J.-W. Bae MS1.
Source: Gajami sikhae (jeotgal), a traditional Korean fermented seafood [7823].
Biochemistry/Physiology: [7823].
Fatty acid: [7823].
G+C (mol%): 53.6 (Tm, fluorimetric method) [7823], 50.66 (Genome sequence) [9209].
DNA-DNA relatedness: [7823].
Phylogeny: 16S rRNA gene (EU817498) [7823].
Genome sequence: AHTH00000000 [9209].
Publication(s) using this strain [C09104, A12274]
Fee category: Domestic, A or C; Overseas, A or C.
Alishewanella agri
JCM number: 15597 <-- J.-W. Bae BL06.
Source: Soil in Pohang, South Korea [8338].
Biochemistry/Physiology: [8338].
Fatty acid: [8338].
G+C (mol%): 54.8 (Tm, fluorimetric method) [8338], 50.6 (Genome sequence) [9212].
DNA-DNA relatedness: [8338].
Phylogeny: 16S rRNA gene (EU909459), gyrB (FJ908754) [8338].
Genome sequence: AKKU00000000 [9212].
Publication(s) using this strain [C10163, C12280]
Fee category: Domestic, A or C; Overseas, A or C.
Anaerotruncus colihominis
JCM number: 15631 <-- CCUG 45055 <-- P. A. Lawson <-- H. N. Shah <-- D. R. Molitoris <-- S. M. Finegold WAL 14565.
Source: Human feces [7179].
Biochemistry/Physiology: [7179].
G+C (mol%): 54 (HPLC) [7179].
Phylogeny: 16S rRNA gene (AJ315980) [7179].
Genome sequence: ABGD00000000.
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides cellulosilyticus
JCM number: 15632 <-- CCUG 44979 <-- M. D. Collins <-- A. Bernalier-Donadille CRE21.
Source: Human feces [7182].
Biochemistry/Physiology: [7182].
Fatty acid: [7182].
G+C (mol%): 41.1 (HPLC) [7182].
DNA-DNA relatedness: [7182].
Phylogeny: 16S rRNA gene (AB510698, AJ583243) [7182,8440,8884], dnaJ (AB619862) [8884], gyrB (AB619900) [8884], hsp60 (AB510670) [8355,8440,8884], recA (AB619938) [8884], rpoB (AB619976) [8884].
Genome sequence: ACCH00000000.
More information: Cellulolytic bacterium [7182].
Quality control by DNA sequences: 16S rRNA gene (AB510698), dnaJ (AB619862), gyrB (AB619900), hsp60 (AB510670), recA (AB619938), rpoB (AB619976).
Publication(s) using this strain [A10209, A10221, A11289, B12117]
Fee category: Domestic, A or C; Overseas, A or C.
Peptostreptococcus stomatis
JCM number: 15636 <-- CCUG 51858 <-- J. Downes W2278.
Source: Human oral cavitiy [6810].
Biochemistry/Physiology: [6810].
G+C (mol%): 36 (HPLC) [6810].
DNA-DNA relatedness: [6810].
Phylogeny: 16S rRNA gene (DQ160208) [6810].
Genome sequence: ADGQ00000000.
Fee category: Domestic, A or C; Overseas, A or C.
Geobacter daltonii
JCM number: 15807 <-- J. E. Kostka FRC-32.
Source: Contaminated subsurface of Oak Ridge Field Research Center, US Department of Energy, Oak Ridge, TN, USA [7961].
Biochemistry/Physiology: [7961].
G+C (mol%): 53 [7961].
DNA-DNA relatedness: [7961].
Phylogeny: 16S rRNA gene (EU660516) [7961], rpoB [7961].
Genome sequence: CP001390.
Publication(s) using this strain [C10046]
Fee category: Domestic, B; Overseas, B.
Dethiosulfovibrio peptidovorans
JCM number: 15826 <-- DSM 11002 <-- G. Ravot SEBR 4207.
Source: Corroding offshore oil well in Congo [7510].
Biochemistry/Physiology: [7510].
G+C (mol%): 56 (HPLC) [7510].
Phylogeny: 16S rRNA gene (U52817) [7510].
Genome sequence: ABTR00000000 [8334].
More information: Corrosion of metal [7510].
Fee category: Domestic, B; Overseas, B.
Lactobacillus antri
JCM number: 15950 <-- LMG 22111 <-- S. Roos Kx146A4.
Source: Human stomach mucosa [5915].
Cell wall: Type A4α (L-Lys-D-Asp) [5915].
G+C (mol%): 44.9 (HPLC) [5915].
DNA-DNA relatedness: [5915].
Phylogeny: 16S rRNA gene (AY253659) [5915].
Other taxonomic data: SDS-PAGE [5915].
Genome sequence: ACLL00000000.
Fee category: Domestic, A or C; Overseas, A or C.
Arthrobacter phenanthrenivorans
JCM number: 16027 <-- LMG 23796 <-- A. Kallimanis et al. Sphe3.
Source: Creosote-contaminated soil, Epirus, Greece [7649,7814].
Biochemistry/Physiology: [7649].
Fatty acid: [7649,7814].
Quinone: MK-8, MK-9(H2) [7649].
Polar lipid: DPG, PG, PE [7649,7814].
G+C (mol%): 65.7±0.2 (fluorimetric dye-binding method) [7649].
DNA-DNA relatedness: [7649].
Phylogeny: 16S rRNA gene (AM176541) [7649,7814], recA (AM931439) [7649].
Genome sequence: CP002379 [8717].
More information: Degrades phenanthrene [7649,7814].
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides clarus
JCM number: 16067 <-- Y. Watanabe A20 (=YIT 12056).
Source: Human feces [8255].
Biochemistry/Physiology: [8255].
Fatty acid: [8255].
Quinone: MK-10, MK-11 [8255].
G+C (mol%): 45.3 (HPLC) [8255].
Phylogeny: 16S rRNA gene (AB490801, AB547638) [8255,8884], dnaJ (AB619865) [8884], gyrB (AB619903) [8884], hsp60 (AB547551) [8355,8884], recA (AB619941) [8884], rpoB (AB619979) [8884].
Genome sequence: AFBM00000000.
Quality control by DNA sequences: 16S rRNA gene (AB547638), dnaJ (AB619865), gyrB (AB619903), hsp60 (AB547551), recA (AB619941), rpoB (AB619979).
Publication(s) using this strain [A10221, C10286, A11289]
Fee category: Domestic, A or C; Overseas, A or C.
Bacteroides fluxus
JCM number: 16101 <-- Y. Watanabe A159 (=YIT 12057).
Source: Human feces [8255].
Biochemistry/Physiology: [8255].
Fatty acid: [8255].
Quinone: MK-10, MK-11 [8255].
G+C (mol%): 45.2 (HPLC) [8255].
Phylogeny: 16S rRNA gene (AB490802, AB547642) [8255,8884], dnaJ (AB619874) [8884], gyrB (AB619912) [8884], hsp60 (AB547555) [8355,8884], recA (AB619950) [8884], rpoB (AB619988) [8884].
Genome sequence: AFBN00000000.
Quality control by DNA sequences: 16S rRNA gene (AB547642), dnaJ (AB619874), gyrB (AB619912), hsp60 (AB547555), recA (AB619950), rpoB (AB619988).
Publication(s) using this strain [A10221, C10286, A11289]
Fee category: Domestic, A or C; Overseas, A or C.
Lactobacillus ultunensis
JCM number: 16177 <-- DSM 16047 <-- S. Roos Kx146C1.
Source: Human stomach mucosa [5915].
Biochemistry/Physiology: [5915].
Cell wall: Type A4α (L-Lys-D-Asp) [5915].
G+C (mol%): 35.7 (HPLC) [5915].
DNA-DNA relatedness: [5915].
Phylogeny: 16S rRNA gene (AY253660) [5915].
DNA typing: SDS-PAGE [5915].
Genome sequence: ACGU00000000.
Fee category: Domestic, A or C; Overseas, A or C.
Mycobacterium colombiense
JCM number: 16228 <-- CECT 3035 <-- M. J. Garcia 10B <-- M. I. Murcia.
Source: Blood of an HIV-positive patient, Colombia, South America [7734].
Biochemistry/Physiology: [7734].
DNA-DNA relatedness: [7734].
Phylogeny: 16S rRNA gene & ITS1 (AM062764) [7734], 16S rRNA gene (GQ153275), rpoB (EF521910, GQ153308), hsp65 (EU239785, GQ153298).
DNA typing: RAPD [7734].
Other taxonomic data: Mycolic acid [7734].
Genome sequence: AFVW00000000 [8955].
More information: A member of Mycobacterium avium complex (MAC).
Publication(s) using this strain [A11054]
Fee category: Domestic, A or C; Overseas, A or C.
Methanocaldococcus villosus
JCM number: 16315 <-- A. Bellack KIN24-T80.
Source: Submarine hydrothermal system at the Kolbeinsei RIdgeissn [8650].
Biochemistry/Physiology: [8650].
G+C (mol%): 30 (Partial genome sequence) [8650].
Phylogeny: 16S rRNA gene (FJ766848) [8650].
Publication(s) using this strain [C11089]
Fee category: Domestic, B; Overseas, B.
Gordonibacter pamelaeae
JCM number: 16334 <-- CCUG 55131 <-- D. Würdemann 7-10-1-b.
Source: Sigmoid region of the colon of a patient suffering from active Crohn's disease [7712].
Biochemistry/Physiology: [7712].
Fatty acid: [7712].
Quinone: [7712].
Polar lipid: [7712].
G+C (mol%): 66.4 (HPLC) [7712].
Phylogeny: 16S rRNA gene (AB566419, AM886059) [7712].
Genome sequence: FP929047.
Quality control by DNA sequences: 16S rRNA gene (AB566419).
Fee category: Domestic, A or C; Overseas, A or C.
Pyramidobacter piscolens
JCM number: 16336 <-- CCUG 55836 <-- J. Downes W5455.
Source: Human oral cavity [7671].
Biochemistry/Physiology: [7671].
Fatty acid: [7671].
G+C (mol%): 59 (HPLC) [7671].
DNA-DNA relatedness: [7671].
Phylogeny: 16S rRNA gene (AB565480, EU309492), 23S rRNA gene (EU379932), secA (DU723069) [7671].
Genome sequence: ADFP00000000.
Quality control by DNA sequences: 16S rRNA gene (AB565480).
Fee category: Domestic, A or C; Overseas, A or C.
Dietzia alimentaria
JCM number: 16360 <-- J.-W. Bae 72.
Source: Traditional salt-fermented seafood made of clam jeotgal, Sokcho, Gangwon-do Province, Korea [8763].
Biochemistry/Physiology: [8763].
Cell wall: meso-A2pm; Ara, Gal [8763].
Fatty acid: n-C16:0, 10Me-C18:0, n-C17:0, n-C19:0, n-C18:1 [8763].
Quinone: MK-8(H2) [8763].
Polar lipid: DPG, PG, PI, PIM [8763].
G+C (mol%): 64.7 [8763].
DNA-DNA relatedness: [8763].
Phylogeny: 16S rRNA gene (GQ368824) [8763].
Other taxonomic data: Mycolic acid [8763].
Genome sequence: AGFF00000000 [8958].
Publication(s) using this strain [B11134]
Fee category: Domestic, A or C; Overseas, A or C.
Desulfurococcus kamchatkensis
JCM number: 16383 <-- DSM 18924 <-- I. V. Kublanov 1221n.
Source: Hot spring of Uzon, Caldera, Kamchatka Peninsula, Russia [7777].
Biochemistry/Physiology: [7777].
G+C (mol%): 44.4 (Tm) [7777].
Phylogeny: 16S rRNA gene (EU167539) [7777].
Genome sequence: CP001140 [8433].
Fee category: Domestic, B; Overseas, B.
Bacteroides faecis
JCM number: 16478 <-- J.-W. Bae MAJ27.
Source: Human feces [8385].
Biochemistry/Physiology: [8385].
Fatty acid: [8385].
G+C (mol%): 42.7 [8385].
DNA-DNA relatedness: [8385].
Phylogeny: 16S rRNA gene (AB547640, GQ496624) [8385,8884], dnaJ (AB619871) [8884], gyrB (AB619909) [8884], hsp60 (AB547553) [8355,8884], recA (AB619947) [8884], rpoB (AB619985) [8884].
Genome sequence: AGDG00000000 [8842].
Quality control by DNA sequences: 16S rRNA gene (AB547640), dnaJ (AB619871), gyrB (AB619909), hsp60 (AB547553), recA (AB619947), rpoB (AB619985).
Publication(s) using this strain [C10183, A10221, A11289]
Fee category: Domestic, A or C; Overseas, A or C.
Ignavibacterium album
JCM number: 16511 <-- NBRC 101810 <-- T. Iino Mat9-16.
Source: Hot spring water streams from Yumata, Nagano, Japan [8153].
Biochemistry/Physiology: [8153].
Fatty acid: [8153].
Quinone: MK-7 [8153].
G+C (mol%): 33.5 (HPLC) [8153].
Phylogeny: 16S rRNA gene (AB478415) [8153].
Genome sequence: CP003418 [9093].
Fee category: Domestic, B; Overseas, B.
Pyrococcus yayanosii
JCM number: 16557 <-- J.-L. Birrien CH1.
Source: Hydrothermal field 'Ashadze' located on the Mid Atlantic Ridge [7891].
Biochemistry/Physiology: [7891,8895].
G+C (mol%): 49.0 (Tm) [7891,8895].
Phylogeny: 16S rRNA gene (EU682399) [7891], concatenated ribosomal protein [8895].
Genome sequence: CP002779 [8743].
More information: Obligately piezophilic and hyperthermophilic [7891].
Publication(s) using this strain [C11169, A11229]
Fee category: Domestic, B; Overseas, B.
Escherichia coli
JCM number: 16574 <-- M. Hattori SE11 <-- K. Itoh No. 71.
Source: Feces of healthy adult [7913].
Serology: O152:H28 [7913].
Genome sequence: AP009240, plasmids pSE11-1 (AP009241), pSE11-2 (AP009242), pSE11-3 (AP009243), pSE11-4 (AP009244), pSE11-5 (AP009245), pSE11-6 (AP009246) [7913].
Fee category: Domestic, A or C; Overseas, A or C.
Escherichia coli
JCM number: 16575 <-- M. Hattori SE15 <-- K. Itoh No. 79.
Source: Feces of healthy adult [7929].
Serology: O150:H5 [7929].
Genome sequence: AP009378, plasmid pECSF1 (AP009379) [7929].
Fee category: Domestic, A or C; Overseas, A or C.
"Acinetobacter oleivorans"
JCM number: 16667 <-- W. Park DR1.
Source: Soil from a rice paddy in Deok-So, South Korea by enrichment with corn oil as the sole carbon.
Biochemistry/Physiology: [8548].
Fatty acid: [8548].
Quinone: Q-9 [8548].
G+C (mol%): 41.4 (HPLC) [8548].
DNA-DNA relatedness: [8548].
Phylogeny: 16S rRNA gene (EF520734) [8548].
Genome sequence: CP002080 [8550].
More information: Utilizes diesel oil or n-hexadecane as a sole carbon [8548].
Publication(s) using this strain [C11263]
Fee category: Domestic, A or C; Overseas, A or C.
Dysgonomonas gadei
JCM number: 16698 <-- CCUG 42882 <-- T. Hofstad 1145589.
Source: Human infected gall bladder [7915].
Biochemistry/Physiology: [7915].
Fatty acid: [7915].
Phylogeny: 16S rRNA gene (AB548675, Y18530) [7915].
Genome sequence: ADLV00000000.
Quality control by DNA sequences: 16S rRNA gene (AB548675).
Fee category: Domestic, A or C; Overseas, A or C.
Dysgonomonas mossii
JCM number: 16699 <-- CCUG 43457 <-- CDC F9489.
Source: Human clinical source [7916].
Biochemistry/Physiology: [7916].
G+C (mol%): 38.5 (HPLC) [7916].
Phylogeny: 16S rRNA gene (AB548676, AJ319867) [7916].
Genome sequence: ADLW00000000.
Quality control by DNA sequences: 16S rRNA gene (AB548676).
Fee category: Domestic, A or C; Overseas, A or C.
Alistipes putredinis
JCM number: 16772 <-- CCUG 45780 <-- CIP 104286 <-- J. P. Carlier 10203 <-- ATCC 29800 <-- E. P. Cato VPI 3293 <-- S. Suzuki strain 1 Ando.
Source: Human specimens [7932].
Biochemistry/Physiology: [7932].
Fatty acid: [7932].
G+C (mol%): 55 (HPLC) [7932].
DNA-DNA relatedness: [7932].
Phylogeny: 16S rRNA gene (AB554232, L16497) [7932].
Taxonomy: [7933].
Genome sequence: ABFK00000000.
Quality control by DNA sequences: 16S rRNA gene (AB554232).
Fee category: Domestic, A or C; Overseas, A or C.
Desulfohalobium retbaense
JCM number: 16813 <-- DSM 5692 <-- J.-L. Garcia HR100.
Source: Sediments from a hypersaline lake, Ratba Lake, near Dakar, Senegal [7943].
Biochemistry/Physiology: [7943].
Fatty acid: [7943].
G+C (mol%): 57.1 (HPLC) [7943].
Phylogeny: 16S rRNA gene (X99235).
Genome sequence: CP001734, plasmid pDRET01 (CP001735) [8331].
Fee category: Domestic, B; Overseas, B.
"Caldicellulosiruptor obsidiansis"
JCM number: 16842 <-- J. G. Elkins OB47.
Source: Obsidian Pool, Yellowstone National Park, WY, USA [7949].
Biochemistry/Physiology: [7949].
G+C (mol%): 35 [7949].
Phylogeny: 16S rRNA gene (GQ338764) [7949].
Genome sequence: CP002164 [8420].
Publication(s) using this strain [A11258]
Fee category: Domestic, B; Overseas, B.
Fretibacterium fastidiosum
JCM number: 16858 <-- S. R. Vartoukian SGP1.
Source: Human oral cavity [9353].
Biochemistry/Physiology: [9353].
Fatty acid: [9353].
G+C (mol%): 63 (genome sequence) [9353].
Phylogeny: 16S rRNA gene (GQ149247) [9353].
Fee category: Domestic, A or C; Overseas, A or C.
Leuconostoc mesenteroides subsp. cremoris
JCM number: 16943 <-- LMG 6909 <-- NCIB 12008 <-- NCDO 543 <-- E. Garvie LF2.
Biochemistry/Physiology: [2472].
G+C (mol%): 38.6 (Tm) [2472].
DNA-DNA relatedness: [593,2471].
Phylogeny: 16S rRNA gene (AB682663).
Taxonomy: [2473].
Genome sequence: ACKV00000000.
Fee category: Domestic, A or C; Overseas, A or C.
Bacillus pseudofirmus
JCM number: 17055 <-- M. Ito OF4 <-- T. Krulwich, Mount Sinai School of Medicine, NY, USA.
Source: Lime-treated garden soil [8127].
Biochemistry/Physiology: [8127,8129].
Quinone: MK-7, MK-6 [8129].
G+C (mol%): 40.4 (HPLC) [8129].
DNA-DNA relatedness: [8127,8129].
Phylogeny: 16S rRNA gene (AB029256) [8129].
Taxonomy: [8129].
Genome sequence: CP001878 [9102].
More information: Physical map of chromosome [8128].
Fee category: Domestic, A or C; Overseas, A or C.
Ornithinibacillus scapharcae
JCM number: 17314 <-- J.-W. Bae TW25.
Source: Dead ark clam collected at Gang-jin Bay in the Southern coastal region of the Korean peninsula [9027].
Biochemistry/Physiology: [9027].
Cell wall: L-Orn (type A4β) [9027].
Fatty acid: [9033].
Quinone: MK-7 [9027].
Polar lipid: DPG, PG [9027].
G+C (mol%): 36.7 (Genome sequence) [9033].
DNA-DNA relatedness: [9027].
Phylogeny: 16S rRNA gene (HQ171440) [9027].
Genome sequence: AEWH00000000 [9033].
Publication(s) using this strain [C12015]
Fee category: Domestic, A or C; Overseas, A or C.
Ruegeria conchae
JCM number: 17315 <-- J.-W. Bae TW15.
Source: Ark clam from the South Sea, Korea [9080].
G+C (mol%): 55.7 (Genome sequence) [9080].
Genome sequence: AEYW00000000 [9080].
Publication(s) using this strain [B12217]
Fee category: Domestic, A or C; Overseas, A or C.
Pyrolobus fumarii
JCM number: 17356 <-- DSM 11204 <-- K. O. Stetter 1A.
Source: Hydrothermally heated black smoker wall at the TAG site at the Mid Atlantic Ridge (3,650 m depth) [8351].
Biochemistry/Physiology: [8351].
Polar lipid: [8351].
G+C (mol%): 52.9 (HPLC) [8351], 53.4 (Tm) [8351].
Phylogeny: 16S rRNA gene (X99555) [4246].
Genome sequence: CP002838 [8755].
Fee category: Domestic, B; Overseas, B.
Eubacterium rectale
JCM number: 17463 <-- KCTC 5835 <-- CIP 105953 <-- ATCC 33656 <-- VPI 0990.
Source: Human feces [8629].
Biochemistry/Physiology: [8629].
Phylogeny: 16S rRNA gene (AB626630).
Genome sequence: CP001107 [8702].
More information: Formerly designated as a neotype strain [8629].
Quality control by DNA sequences: 16S rRNA gene (AB626630).
Fee category: Domestic, A or C; Overseas, A or C.
Amycolicicoccus subflavus
JCM number: 17490 <-- CGMCC 4.3532 <-- Y.-N. Wang et al. DQS3-9A1.
Source: Saline soil contaminated with crude oil in the Daqing Oilfield, China [8323].
Biochemistry/Physiology: [8323].
Cell wall: Ala, Glu, Met, His; Ara, Gal, Glc, Xyl [8323].
Fatty acid: [8323].
Quinone: MK-8, MK-7 [8323].
Polar lipid: DPG, PE, PG, PC, PI, GlcNU [8323].
G+C (mol%): 60.04 (Tm) [8323].
Phylogeny: 16S rRNA gene (EF564379) [8323].
Other taxonomic data: Mycolic acids are absent [8323].
Genome sequence: CP002786.
Fee category: Domestic, A or C; Overseas, A or C.
Dialister invisus
JCM number: 17566 <-- CCUG 47026 <-- J. Downes <-- W. G. Wade strain E7.25.
Source: Human oral cavity [8480].
Biochemistry/Physiology: [8480].
G+C (mol%): 45 (HPLC) [8480].
Phylogeny: 16S rRNA gene (AB626632, AY162469) [8480].
Genome sequence: ACIM00000000.
Quality control by DNA sequences: 16S rRNA gene (AB626632).
Publication(s) using this strain [A12296]
Fee category: Domestic, A or C; Overseas, A or C.
Dialister micraerophilus
JCM number: 17567 <-- CCUG 48837 <-- CIP 108278 <-- J. P. Carlier AIP 25.04 <-- H. Marchandin ADV 04.01.
Source: Human clinical sample (amniotic fluid) [8481].
Biochemistry/Physiology: [8481].
G+C (mol%): 36.3 (HPLC) [8481].
Phylogeny: 16S rRNA gene (AB626633, AF473837), dnaK (AY851488) [8481].
Genome sequence: AFBB00000000.
Quality control by DNA sequences: 16S rRNA gene (AB626633).
Publication(s) using this strain [A12296]
Fee category: Domestic, A or C; Overseas, A or C.
Methylotenera versatilis
JCM number: 17579 <-- A. Vorobev 301 <-- M. Kalyuzhnaya.
Source: Sediment of Lake Washington, Seattle, USA [8938].
Biochemistry/Physiology: [8938].
Fatty acid: [8938].
G+C (mol%): 42.6 (Genome sequence) [8938].
DNA-DNA relatedness: [8938].
Genome sequence: CP002056 [8938].
Publication(s) using this strain [C12112]
Fee category: Domestic, A or C; Overseas, A.
Rhodanobacter denitrificans
JCM number: 17641 <-- J. E. Kostka 2APBS1.
Source: Sediment of the Oak Ridge Integrated Field Research Challenge (OR-IFRC) site, Oak Ridge, TN, USA [8939,8940].
Fatty acid: [8940].
Quinone: Q-8 [8940].
Polar lipid: DPG, PG, PE, PL, AL [8940].
G+C (mol%): 67.5 (Genome sequence) [8940].
DNA-DNA relatedness: [8940].
Phylogeny: 16S rRNA (JF719060) [8940].
Publication(s) using this strain [C12036, C12194]
Fee category: Domestic, A or C; Overseas, A or C.
Serinicoccus profundi
JCM number: 17740 <-- CGMCC 4.5582 <-- J. Xu 0714S6-1 (=MCCC 1A05965).
Source: Deep-sea (5,368 m) sediment of the Indian Ocean [8615].
Biochemistry/Physiology: [8615].
Cell wall: Ala, Gly, Ser, L-Orn, Glu (type A4β); N-glycolyl Mur [8615].
Fatty acid: i-C15:0, i-C16:0, a-C15:0, i-C17:0, a-C17:0 [8615].
Quinone: MK-8(H4) [8615].
Polar lipid: PG, DPG, PI, PC [8615].
G+C (mol%): 72 (HPLC) [8615].
DNA-DNA relatedness: [8615].
Phylogeny: 16S rRNA gene (EU603762) [8615].
Genome sequence: AFYF00000000 [8956].
Fee category: Domestic, A or C; Overseas, A or C.
"Melioribacter roseum"
JCM number: 17771 <-- O. A. Podosokorskaya P3M-2.
Genome sequence: CP003557 [9321].
Fee category: Domestic, B; Overseas, B.
Methanocella conradii
JCM number: 17849 <-- Z. Lü HZ254.
Source: Rice field soil in Hangzhou, China [9120].
Biochemistry/Physiology: [9120].
G+C (mol%): 52.7 (Genome sequence) [9120].
Phylogeny: 16S rRNA gene (JN048683) [9120], mcrA (JN081865) [9120].
Genome sequence: CP003243 [9051].
Publication(s) using this strain [C12339]
Fee category: Domestic, B; Overseas, B.
Magnetococcus marinus
JCM number: 17883 <-- C. T. Lefèvre <-- D. A. Bazylinski MC-1.
Source: Oxic-anoxic transition zone in the Pettasquamscutt estuary in Narragansett Bay, Rhode Island.
G+C (mol%): 54.17 (Genome sequence) [8748].
Genome sequence: CP000471 [8748].
More information: Magneto-aerotaxis [8747].
Reference: DOI: 10.1099/ijs.0.038927-0.
Fee category: Domestic, A or C; Overseas, A or C.
Streptomyces zinciresistens
JCM number: 18080 <-- Y. B. Lin and G.-H. Wei CCNWNQ 0016 (=K42).
Source: Zinc-contaminated soil from Shaanxi Province, north-western China [8864].
Biochemistry/Physiology: [8864].
Cell wall: LL-A2pm [8864].
Fatty acid: a-C15:0, n-C16:0, i-C16:0 [8864].
Quinone: MK-9(H6), MK-9(H8) [8864].
Polar lipid: DPG, PE, PI, PIMs (type PII) [8864].
G+C (mol%): 70.3 (Tm) [8864].
DNA-DNA relatedness: [8864].
Phylogeny: 16S rRNA gene (GU225938) [8864].
Genome sequence: AGBF00000000 [8865].
More information: Resistence to Zn2+ (35 mM) [8864].
Fee category: Domestic, A or C; Overseas, A or C.
Cellulomonas flavigena
JCM number: 18109 <-- CIP 82.10 <-- ATCC 482 <-- N. R. Smith NRS 134.
Biochemistry/Physiology: [255,266].
Cell wall: Type A4β (L-Orn-D-Asp) [227,251]; neutral polysaccharide (Rha) [2883].
Fatty acid: [228].
Quinone: MK-9(H4) [376].
Serology: [268].
G+C (mol%): 72.7 (Tm) [125].
DNA-DNA relatedness: [266].
Phylogeny: 16S rRNA catalog [273], 16S rRNA gene (X79463, X83799) [3946].
Taxonomy: [250,256,266].
Genome sequence: CP001964 [8408].
More information: Glucose breakdown pathway [267]; Cellobiose phosphorylase [1011]; Polar multitrichous flagella [1068].
Fee category: Domestic, A or C; Overseas, A or C.
Corynebacterium glutamicum
JCM number: 18229 <-- H. Yukawa strain R.
Source: Meadow soil, Japan [8948].
Genome sequence: AP009044, NC_009342 [8948].
Publication(s) using this strain [A12084, A12282]
Fee category: Domestic, A or C; Overseas, A or C.
Syntrophus aciditrophicus
JCM number: 18717 <-- M. J. McInerney strain SB.
Source: Sewage sludge from the second anaerobic digestor at the municipal wastewater treatment plant in Norman, Oklahoma, USA [9215].
Biochemistry/Physiology: [9216].
Fatty acid: [9216].
G+C (mol%): 43.1 (HPLC) [9216].
Phylogeny: 16S rRNA gene (U86447) [9216].
Genome sequence: CP000252 [9219].
More information: Benzoate degradation [9215,9217]; Cyclohexane carboxylate formation [9218].
Fee category: Domestic, B; Overseas, B.
Kocuria rhizophila
JCM number: 20050 <-- IAM 1099 <-- NIHJ <-- ATCC 9341 <-- FDA strain PCI 1001 ("Sarcina lutea") <-- E. R. Squibb & Sons.
Source: Soil.
Biochemistry/Physiology: [5484,7065].
Fatty acid: [5484].
G+C (mol%): 70.4 [7065].
DNA-DNA relatedness: [1203,5484].
Phylogeny: 16S rRNA gene (AF542072) [5484].
DNA typing: RiboPrint pattern [5484].
Taxonomy: Reclassification [5484].
Genome sequence: AP009152 [7370].
More information: Strain DC2201.
Production: L-sorbosone (US Pat. 3,912,592).
Assay: antibiotics (Japanese Pharmacopoeia, 14 ed.).
Fee category: Domestic, A or C; Overseas, A or C.
Starkeya novella
JCM number: 20403 <-- IAM 12100 <-- ATCC 8093 <-- R. L. Starkey.
Phylogeny: 16S rRNA gene (D32247).
Genome sequence: CP002026.
Fee category: Domestic, A or C; Overseas, A or C.
Aerococcus viridans
JCM number: 20461 <-- IAM 12302 <-- K. Sakaguchi <-- NCTC 8251 <-- R. E. O. Williams M1.
Source: Air [6722].
Biochemistry/Physiology: [126,6724,6725].
Numerical taxonomy: [1602].
Cell wall: L-Lys-L-Ala [098,6694].
Fatty acid: [6649].
G+C (mol%): 39.0 (Tm) [6685], 38.5 (Tm) [6679], 42.7 (Tm) [6728].
Phylogeny: 16S rRNA gene (AB680262).
Taxonomy: [126].
Genome sequence: ADNT00000000.
Production: lactic acid from glucose [6725].
Assay: vitamin requirement [6726].
Fee category: Domestic, A or C; Overseas, A or C.
Cytophaga hutchinsonii
JCM number: 20678 <-- IAM 12607 <-- NCIB 9469 <-- P. H. A. Sneath D465 <-- P. Y. Stanier.
Source: Seawater, Ganghwa Island, Korea.
Genome sequence: CP000383 [8228].
Fee category: Domestic, A or C; Overseas, A or C.
Halomonas elongata
JCM number: 21044 <-- IAM 14166 <-- ATCC 33173 <-- R. Vreeland 1H9.
Source: Solar salt facility located on Bonaire, Netherlands Antilles [6570].
Biochemistry/Physiology: [6570].
G+C (mol%): 60.5 (Tm) [6570].
Phylogeny: 16S rRNA gene (AB680890, AM941743, M93355).
Genome sequence: FN869568 [8777].
More information: Ectoine metabolism [8777].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 08103.
Fee category: Domestic, A or C; Overseas, A or C.
Marinilabilia salmonicolor
JCM number: 21150 <-- IAM 14310 <-- NCIMB 2216 <-- ATCC 19041 <-- H. Veldkamp <-- J. Lascelles.
Source: Marine mud [9224].
Biochemistry/Physiology: [9224].
Quinone: MK-7 [3903].
G+C (mol%): 37 (Bd) [2911], 41.92 (Genome sequence) [9210].
Phylogeny: 16S rRNA gene (AB517713, D12672) [3903].
Taxonomy: [4101].
Genome sequence: AJKI00000000 [9210].
Publication(s) using this strain [A12275]
Fee category: Domestic, A or C; Overseas, A or C.
Roseobacter denitrificans
JCM number: 21267 <-- IAM 14592 <-- IFO 15277 <-- T. Shiba OCh114.
Source: Enteromorpha linza collected at Aburatsubo Inlet, Kanagawa Pref., Japan.
Biochemistry/Physiology: [6739].
Fatty acid: C18:1 [6739].
Quinone: Q-10 [6739].
G+C (mol%): 59.6±0.5 (HPLC) [6739].
DNA-DNA relatedness: [6739].
Genome sequence: CP000362.
Production: bacteriochlorophyll a [6739].
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 08111.
Fee category: Domestic, A or C; Overseas, A or C.
Marinomonas mediterranea
JCM number: 21426 <-- IAM 14944 <-- ATCC 700492 <-- A. S. Amat MMB-1.
Source: Seawater from the Mediterranean coast of southern Spain [7132].
Biochemistry/Physiology: [6582,7132].
G+C (mol%): 46.3 (HPLC) [7132].
Phylogeny: 16S rRNA gene (AB681908, AF063027) [6581].
Genome sequence: CP002583.
Production: polyphenol oxidases (PPOs) [7132].
Fee category: Domestic, A or C; Overseas, A or C.
Mesorhizobium loti
JCM number: 21590 <-- IAM 15132 <-- MAFF 303099.
Source: Lotus corniculatus, Tochigi, Japan.
Genome sequence: BA000012.
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 07546.
Fee category: Domestic, A or C; Overseas, A or C.
Pedobacter saltans
JCM number: 21818 <-- IAM 15374 <-- NBRC 100064 <-- LMG 9526 <-- P. Steyn 113.
Source: Soil, Iceland.
Phylogeny: 16S rRNA gene (AB681143, AJ438173).
Genome sequence: CP002545.
Publication(s) using this strain [A08170]
Fee category: Domestic, A or C; Overseas, A or C.
Kluyveromyces lactis
JCM number: 22014 <-- IAM 12492 <-- AJ 5303 <-- T. Tsuchiya J-6279 <-- IFO 1267 <-- NRRL Y-1140.
G+C (mol%): 40.0 (Tm) [337].
Genome sequence: Project ID: 13835.
Publication(s) using this strain [A12055]
Fee category: Domestic, A or C; Overseas, A or C.
Mixia osmundae
JCM number: 22182 <-- IAM 14324 <-- K. Ando.
Source: Leaves, Osmunda japonica (Japanese royal fern).
Genome sequence: Project ID: 48573 [8532].
Publication(s) using this strain [C08292]
Fee category: Domestic, A or C; Overseas, A or C.
Chaetomium globosum
JCM number: 22615 <-- IAM 8059 <-- ATCC 6205 <-- QM 459 <-- USDA (C. Thom 1042.4) <-- H. Hunfeld.
Source: Stored cotton; Collection of C. Thom [8243].
Locality: Washington DC, USA.
Morphology: [8243].
Quinone: Q-10(H2) [3005].
Phylogeny: 28S rRNA gene (AF286403) [8245].
Genome sequence: Project ID: 12795.
Production: cellulase.
Application: Fungus resistance test (JIS Z 2911-2000); JIS A 5756-1997; JIS W 0812-2004, A.O.A.C.; Spray test [8244].
Fee category: Domestic, A or C; Overseas, A or C.
Trichoderma reesei
JCM number: 22676 <-- IAM 13106 <-- S. Tokumasu <-- K. Nisizawa, Tokyo University of Education <-- QM 6a.
Source: Cotton duck shelter.
Locality: Bougainville Island, Solomon Islands, Papua New Guinea [7455].
Description: [7455].
Genome sequence: Project ID: 15571 [8198].
More information: US Pat. 4,094,739; Biomass Collection (http://dna.brc.riken.jp/en/biomass.html).
Production: cellulase [7455,8246,8247].
Fee category: Domestic, A or C; Overseas, A or C.
Coraliomargarita akajimensis
JCM number: 23193 <-- IAM 15411 <-- J. Yoon et al. 04OKA010-24.
Source: Seawater surrounding the hard coral Galaxea facicularis L., collected at Majanohama, Akajima, Japan [6983].
Biochemistry/Physiology: [6983].
Cell wall: A2pm and muramic acid are not detected [6983].
Fatty acid: [6983].
Quinone: MK-7 [6983].
G+C (mol%): 53.9 (HPLC) [6983].
Phylogeny: 16S rRNA gene (AB266750) [6983].
Genome sequence: CP001998.
Fee category: Domestic, A or C; Overseas, A or C.