Tohno, M., Kobayashi, H., Nomura, M., Kitahara, M., Ohkuma, M., Uegaki, R., and Cai, Y. 2012. Genotypic and phenotypic characterization of lactic acid bacteria isolated from Italian ryegrass silage. Anim. Sci. J. 83: 111-120. PubMed ID: 22339691.

Saksinchai, S., Suzuki, M., Lumyong, S., Ohkuma, M., and Chantawannakul, P. 2012. Two new species of the genus Candida in the Zygoascus clade, Candida lundiana sp. nov. and Candida suthepensis sp. nov., isolated from raw honey in Thailand. Antonie van Leeuwenhoek 101: 633-640. PubMed ID: 22105532.

Saksinchai, S., Suzuki, M., Chantawannakul, P., Ohkuma, M., and Lumyong, S. 2012. A novel ascosporogenous yeast species, Zygosaccharomyces siamensis, and the sugar tolerant yeasts associated with raw honey collected in Thailand. Fungal Diversity 52: 123-139.

Minegishi, H., Kamekura, M., Kitajima-Ihara, T., Nakasone, K., Echigo, A., Shimane, Y., Usami, R., Itoh, T., and Ihara, K. 2012. Gene orders in the upstream of 16S rRNA genes divide genera of the family Halobacteriaceae into two groups. Int. J. Syst. Evol. Microbiol. 62: 188-195. PubMed ID: 21378133.

Cai, Y., Pang, H., Kitahara, M., and M. Ohkuma 2012. Lactobacillus nasuensis sp. nov., a lactic acid bacterium isolated from silage, and emended description of the genus Lactobacillus. Int. J. Syst. Evol. Microbiol. 62: 1140-1144. PubMed ID: 21724957.

Kitahara, M., Sakamoto, M., Tsuchida, S., Kawasumi, K., Amao, H., Benno, Y., and Ohkuma, M. 2012. Bacteroides stercorirosoris sp. nov. and Bacteroides faecichinchillae sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces. Int. J. Syst. Evol. Microbiol. 62: 1145-1150. PubMed ID: 21724955.

Kato, S., Itoh, T., and Yamagishi, A. 2011. Archaeal diversity in a terrestrial acidic spring field revealed by a novel PCR primer targeting archaeal 16S rRNA genes. FEMS Microbiol. Lett. 319: 34-43. PubMed ID: 21410512.

Takeda, T., Yun, C.-S., Shintani, M., Yamane, H., and Nojiri, H. 2011. Distribution of genes encoding nucleoid-associated protein homologs in plasmids. Int. J. Evol. Biol. 2011: Article ID: 685015, 1-30. PubMed ID: 21350637.

Namwong, S., Tanasupawat, S., Kudo, T., and Itoh, T. 2011. Haloarcula salaria sp. nov. and Haloarcula tradensis sp. nov., isolated from salt in Thai fish sauce. Int. J. Syst. Evol. Microbiol. 61: 231-236. PubMed ID: 20207809.

Tanaka, N., Romanenko, L. A., Iino, T., Frolova, G. A., and Mikhailov, V. V. 2011. Cocleimonas flava gen. nov., sp. nov., a gammaproteobacterium isolated from sand snail (Umbonium costatum). Int. J. Syst. Evol. Microbiol. 61: 412-416. PubMed ID: 20348322.

Thawai, C., Tanasupawat, S., Suwanborirux, K., and Kudo, T. 2011. Agromyces tropicus sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 61: 605-609. PubMed ID: 20435752.

Moriya, T., Hikota, T., Yumoto, I., Ito, T., Terui, Y., Yamagishi, A., and Oshima, T. 2011. Calditerricola satsumensis gen. nov., sp. nov. and Calditerricola yamamurae sp. nov., extreme thermophiles isolated from a high-temperature compost. Int. J. Syst. Evol. Microbiol. 61: 631-636. PubMed ID: 20400666.

Kitahara, M., Tsuchida, S., Kawasumi, K., Amao, H., Sakamoto, M., Benno, Y., and Ohkuma, M. 2011. Bacteroides chinchillae sp. nov. and Bacteroides rodentium sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces. Int. J. Syst. Evol. Microbiol. 61: 877-881. PubMed ID: 20495039.

Inoue, K, Itoh, T., Ohkuma, M., and Kogure, K. 2011. Halomarina oriensis gen. nov., sp. nov., a halophilic archaeon isolated from a seawater aquarium. Int. J. Syst. Evol. Microbiol. 61: 942-946. PubMed ID: 20495022.

Péter, G., Dlauchy, D., Tornai-Lehoczki, J., Suzuki, M. and Kurtzman, C. P. 2011. Spencermartinsiella europaea gen. nov., sp. nov., a new member of the family Trichomonascaceae. Int. J. Syst. Evol. Microbiol. 61: 993-1000. PubMed ID: 20435745.

Shibazaki, A., Omoto, Y., Kudo, T., Yaguchi, T., Saito, A., Ando, A., Mikami, Y., and Gonoi, T. 2011. Streptomyces coacervatus sp. nov., isolated from the intestinal tract of Armadillidium vulgare. Int. J. Syst. Evol. Microbiol. 61: 1073-1077. PubMed ID: 20525817.

Songsumanus, A., Tanasupawat, S., Thawai, C., Suwanborirux, K., and Kudo, T. 2011. Micromonospora humi sp. nov., isolated from peat swamp forest soil. Int. J. Syst. Evol. Microbiol. 61: 1176-1181. PubMed ID: 20562246.

Itoh, T., Yamanoi, K., Kudo, T., and Takashina, T. 2011. Aciditerrimonas ferrireducens gen. nov., sp. nov., an iron-reducing thermoacidophilic actinobacterium isolated from a solfataric field. Int. J. Syst. Evol. Microbiol. 61: 1281-1285. PubMed ID: 20639230.

Kawasaki, S., Kurosawa, K., Miyazaki, M., Yagi, C., Kitajima, Y., Tanaka, S., Irisawa, T., Okada, S., Sakamoto, M., Ohkuma, M., and Niimura, Y. 2011. Lactobacillus floricola sp. nov., lactic acid bacteria isolated from mountain flowers. Int. J. Syst. Evol. Microbiol. 61: 1356-1359. PubMed ID: 20601482.

Cai, Y., Yang, J., Pang, H., and Kitahara, M. 2011. Lactococcus fujiensis sp. nov., a lactic acid bacterium isolated from vegetable matter. Int. J. Syst. Evol. Microbiol. 61: 1590-1594. PubMed ID: 20675438.

Takashima, M., Van, B. H., An, K.-D., and Ohkuma, M. 2011. Dioszegia rishiriensis sp. nov., a novel yeast species from soil collected on Rishiri Island, Hokkaido, Japan. Int. J. Syst. Evol. Microbiol. 61: 1736-1739. PubMed ID: 20656806.

Promnuan, Y., Kudo, T., Ohkuma, M., and Chantawannakul, P. 2011. Actinomadura apis sp. nov., isolated from a honey bee (Apis mellifera) hive, and the reclassification of Actinomadura cremea subsp. rifamycini Gauze et al. 1987 as Actinomadura rifamycini (Gauze et al. 1987) sp. nov., comb. nov. Int. J. Syst. Evol. Microbiol. 61: 2271-2277. PubMed ID: 20952541.

Thawai, C., Tanasupawat, S., Kudo, T. 2011. Dactylosporangium tropicum sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 61: 2358-2362. PubMed ID: 21037030.

Kawasaki, S., Kurosawa, K., Miyazaki, M., Sakamoto, M., Ohkuma, M., Niimura, Y. 2011. Lactobacillus ozensis sp. nov., isolated from mountain flowers. Int. J. Syst. Evol. Microbiol. 61: 2435-2438. PubMed ID: 21075903.

Morita, T., Ogura, Y., Takashima, M., Hirose, N., Fukuoka, T., Imura, T., Kondo, Y., and Kitamoto, D. 2011. Isolation of Pseudozyma churashimaensis sp. nov., a novel ustilaginomycetous yeast species as a producer of glycolipid biosurfactants, mannosylerythritol lipds. J. Biosci. Bioeng. 112: 137-144. PubMed ID: 21606002.

Odamaki, T., Yonezawa, S., Kitahara, M., Sugahara, Y., Xiao, J.-Z., Yaeshima, T., Iwatsuki, K., and Ohkuma, M. 2011. Novel multiplex polymerase chain reaction primer set for identification of Lactococcus species. Lett. Appl. Microbiol. 52: 491-496. PubMed ID: 21299580.

Shintani, M., Horisaki, T., Yamane, H., Ohkuma, M., and Nojiri, H. 2011. Evolution of the IncP-7 carbazole-degradative plasmid pCAR1 improves survival of its host Psudomonas fluorescens Pf0-1 in artificial water microcosms. Microbiology 157: 2276-2286. PubMed ID: 21565929.

Sakamoto, M. and Ohkuma, M. 2011. Identification and classification of the genus Bacteroides by multilocus sequence analysis. Microbiology 157: 3388-3397. PubMed ID: 21948050.

Endoh, R., Suzuki, M., Okada, G., Takeuchi, Y., and Futai, K. 2011. Fungus symbionts colonizing the galleries of the ambrosia beetle Platypus quercivorus. Mirob. Ecol. 62: 106-120. PubMed ID: 21384214.

Gams, W., Jaklitsch, W., and 77 signatories. 2011. Fungal nomenclature 3. A critical response to the 'Amsterdam Declaration'. Mycotaxon 116: 501-512.

Crous, P. W., Groenewald, J. Z., Shivas, R. G., Edwards, J., Seifert, K. A., Alfenas, A. C., Alfenas, R. F., Burgess, T. I., Carnegie, A. J., Hardy, G. E. St. J., Hiscock, N., Huberli, D., Jung, T., Louis-Seize, G., Okada, G., Pereira, O. L., Stukely, M. J. C., Wang, W., White, G. P., Young, A. J., McTaggart, A. R., Pascoe, I. G., Porter, I. J., and Quaedvlieg, W. 2011. Fungal Planet description sheets: 69-91. Persoonia 26: 108-156.

Seifert, K. and Okada, G. 2011. Keys: Synnematous hyphomycete genera, In: Seifert, K., Morgan-Jones, G., Gams, W., and Kendrick, B. (eds.), The Genera of Hyphomycetes, pp. 929-940, CBS-KNAW Fungal Biodiversity Centre, Utrecht, Netherlands.

Morita, T., Takashima, M., Fukuoka, T., Konishi, M., Imura, T., and Kitamoto, D. 2010. Isolation of basidiomycetous yeast Pseudozyma tsukubaensis and production of glycolipid biosurfactant, a diastereomer type of mannosylerythritol lipid-B. Appl. Microbiol. Biotechnol. 88: 679-688. PubMed ID: 20652239.

Yamagishi, A., Yokobori, S., Yoshimura, Y., Yamashita, M., Hashimoto, H., Kubota, T., Yano, H., Haruyama, J., Tabata, M., Kobayashi, K., Honda, H., Utsumi, Y., Saiki, T., Itoh, T., Miyakawa, A., Hamase, K., Naganuma, T., Mita, H., Tonokura, K., Sasaki, S., and Miyamoto, H. 2010. Japan Astrobiology Mars Project (JAMP): Search for microbes on the Mars surface with special interest in methane-oxidizing bacteria. Biol. Sci. Space 24: 67-82.

Nakazawa, Y., Suzuki, R., Uchino, M., Sagane, Y., Kudo, T., Nagai, T., Sato, H., and Takano, K. 2010. Identification of actinomycetes producing phospholipase D with high transphosphatidylation activity. Curr. Microbiol. 60: 365-372. PubMed ID: 19937030.

Kitahara, M., Sakamoto, M., and Benno, Y. 2010. Lactobacillus similis sp. nov., isolated from fermented cane molasses. Int. J. Syst. Evol. Microbiol. 60: 187-190. PubMed ID: 19648343.

Sakamoto, M., Suzuki, N., and Okamoto, M. 2010. Prevotella aurantiaca sp. nov., isolated from the human oral cavity. Int. J. Syst. Evol. Microbiol. 60: 500-503. PubMed ID: 19654360.

Tanasupawat, S., Jongrungruangchok, S., and Kudo, T. 2010. Micromonospora marina sp. nov., isolated from sea sand. Int. J. Syst. Evol. Microbiol. 60: 648-652. PubMed ID: 19656925.

Yang, Y., Itoh, T., Yokobori, S., Shimada, H., Itahashi, S., Satoh, K., Ohba, H., Narumi, I., and Yamagishi, A. 2010. Deinococcus aetherius sp. nov., isolated from the stratosphere. Int. J. Syst. Evol. Microbiol. 60: 776-779. PubMed ID: 19656935.

Chamroensaksri, N., Tanasupawat, S., Akaracharanya, A., Visessanguan, W., Kudo, T., and Itoh, T. 2010. Gracilibacillus thailandensis sp. nov., from fermented fish (pla-ra). Int. J. Syst. Evol. Microbiol. 60: 944-948. PubMed ID: 19661518.

Burns, D. G., Janssen, P. H., Itoh, T., Minegishi, H., Usami, R., Kamekura, M., and Dyall-Smith, M. L. 2010. Natronomonas moolapensis sp. nov., non-alkaliphilic isolates recovered from a solar saltern crystallizer pond, and emended description of the genus Natronomonas. Int. J. Syst. Evol. Microbiol. 60: 1173-1176. PubMed ID: 19667395.

Burns, D. G., Janssen, P. H., Itoh, T., Kamekura, M., Echigo, A., and Dyall-Smith, M. L. 2010. Halonotius pteroides gen. nov., sp. nov., an extremely halophilic archaeon recovered from a saltern crystallizer. Int. J. Syst. Evol. Microbiol. 60: 1196-1199. PubMed ID: 19667389.

Vishniac, H. S. and Takashima, M. 2010. Rhodotorula arctica sp. nov., a basidiomycetous yeast from Arctic soil. Int. J. Syst. Evol. Microbiol. 60: 1215-1218. PubMed ID: 19666804.

Iino, T., Mori, K., Uchino, Y., Nakagawa, T., Harayama, S., and Suzuki, K. 2010. Ignavibacterium album gen. nov., sp. nov., a moderately thermophilic anaerobic bacterium isolated from microbial mats at a terrestrial hot spring and proposal of Ignavibacteria classis nov., for a novel lineage at the periphery of green sulfur bacteria. Int. J. Syst. Evol. Microbiol. 60: 1376-1382. PubMed ID: 19671715.

Thawai, C., Tanasupawat, S., Suwanborirux, K., and Kudo, T. 2010. Actinaurispora siamensis gen. nov., sp. nov., a new member of the family Micromonosporaceae. Int. J. Syst. Evol. Microbiol. 60: 1660-1666. PubMed ID: 19734290.

Jin, J.-S., Kitahara, M., Sakamoto, M., Hattori, M., and Benno, Y. 2010. Slackia equolifaciens sp. nov., a human intestinal bacterium capable of producing equol. Int. J. Syst. Evol. Microbiol. 60: 1721-1724. PubMed ID: 19734283.

Minegishi, H., Kamekura, M., Itoh, T., Echigo, A., Usami, R., and Hashimoto, T. 2010. Further refinement of the phylogeny of the Halobacteriaceae based on the full-length RNA polymerase subunit B' (rpoB') gene. Int. J. Syst. Evol. Microbiol. 60: 2398-2408. PubMed ID: 19946058.

Endo, A., Futagawa-Endo, Y., Sakamoto, M., Kitahara, M., and Dicks, L. M. T. 2010. Lactobacillus florum sp. nov., a fructophilic species isolated from flowers. Int. J. Syst. Evol. Microbiol. 60: 2478-2482. PubMed ID: 19965998.

Iino, T., Mori, K., and Suzuki, K. 2010. Methanospirillum lacunae sp. nov., a methane-producing archaeon isolated from a puddly soil, and emended descriptions of the genus Methanospirillum and Methanospirillum hungatei. Int. J. Syst. Evol. Microbiol. 60: 2563-2566. PubMed ID: 20008107.

Sakamoto, M., Suzuki, N., and Benno, Y. 2010. hsp60 and 16S rRNA gene sequence relationships among species of the genus Bacteroides with the finding that Bacteroides suis and Bacteroides tectus are heterotypic synonyms of Bacteroides pyogenes. Int. J. Syst. Evol. Microbiol. 60: 2984-2990. PubMed ID: 20118288.

Sugiyama, Y., Oya, A., Kudo, T., and Hirota, A. 2010. Surugapyrone A from Streptomyces coelicoflavus strain USF-6280 as a new DPPH radical-scavenger. J. Antibiot. 63: 365-369. PubMed ID: 20588303.

Nakase, T., Imanishi, Y., Ninomiya, S., and Takashima, M. 2010. Candida rishirensis sp. nov., a novel methylotrophic anamorphic yeast species isolated from soil on Rishiri Island in Japan. J. Gen. Appl. Microbiol. 56: 169-173. PubMed ID: 20513965.

Suzuki, R., Zhang, Y., Iino, T., Kosako, Y., Komagata, K., and Uchimura, T. 2010. Asaia astilbes sp. nov., Asaia platycodi sp. nov., and Asaia prunellae sp. nov., novel acetic acid bacteria isolated from flowers in Japan. J. Gen. Appl. Microbiol. 56: 339-346. PubMed ID: 20953098.

Tanasupawat, S., Chamroensaksri, N., Kudo, T., and Itoh, T. 2010. Identification of moderately halophilic bacteria from Thai fermented fish (pla-ra) and proposal of Virgibacillus siamensis sp. nov. J. Gen. Appl. Microbiol. 56: 369-379. PubMed ID: 21099133.

Sakamoto, M. and Ohkuma, M. 2010. Usefulness of the hsp60 gene for the identification and classification of Gram-negative anaerobic rods. J. Med. Microbiol. 59: 1293-1302. PubMed ID: 20671088.

Koyanagi, T., Sakamoto, M., Takeuchi, Y., Ohkuma, M., and Izumi, Y. 2010. Analysis of microbiota associated with peri-implantitis using 16S rRNA gene clone library. J. Oral Microbiol. 2: 5104. PubMed ID: 21523229.

Siqueira, J. F., Jr., Sakamoto, M., and Rosado, A. S. 2010. Microbial community profiling using terminal restriction fragment length polymorphism (T-RFLP) and denaturing gradient gel electrophoresis (DGGE). Methods Mol. Biol. 666: 71-85. PubMed ID: 20717779.

Kurtzman, C. P. and Suzuki, M. 2010. Phylogenetic analysis of ascomycete yeasts that form coenzyme Q-9 and the proposal of the new genera Babjeviella, Meyerozyma, Millerozyma, Priceomyces and Scheffersomyces. Mycoscience 51: 2-14.

Yamazaki, Y., Akashi, R., Banno, Y., Endo, T., Ezura, H., Fukami-Kobayashi, K., Inaba, K., Isa, T., Kamei, K., Kasai, F., Kobayashi, M., Kurata, N., Kusaba, M., Matuzawa, T., Mitani, S., Nakamura, T., Nakamura, Y., Nakatsuji, N., Naruse, K., Niki, H., Nitasaka, E., Obata, Y., Okamoto, H., Okuma, M., Sato, K., Serikawa, T., Shiroishi, T., Sugawara, H., Urushibara, H., Yamamoto, M., Yaoita, Y., Yoshiki, A., and Kohara, Y. 2010. NBRP databases: databases of biological resources in Japan. Nuleic Acids Res. 38: D26-D32. PubMed ID: 19934255.

Todaka, N., Inoue, T., Saita, K., Ohkuma, M., Nalepa, C., A., Lenz, M., Kudo, T., and Moriya, S. 2010. Phylogenetic analysis of cellulolytic enzyme genes from representative lineages of termites and a related cockroach. PLoS One 5: e8636. PubMed ID: 20072608.

Obata, T., Goto, Y., Kunisawa, J., Sato, S., Sakamoto, M., Setoyama, H., Matsuki, T., Nonaka, K., Shibata, N., Gohda, M., Kagiyama, Y., Nochi, T., Yuki, Y., Fukuyama, Y., Mukai, A., Shinzaki, S., Fujihashi, K., Sasakawa, C., Iijima, H., Goto, M., Umesaki, Y., Benno, Y., and Kiyono, H. 2010. Indigenous opportunistic bacteria inhabit mammalian gut-associated lymphoid tissues and share a mucosal antibody-mediated symbiosis. Proc. Natl. Acad. Sci. USA 107: 7419-7424. PubMed ID: 20360558.

Bonfante, P., Visick, K., and Ohkuma, M. 2010. Symbiosis in the omics era. Environ. Microbiol. Rept. 2: 475-478.

Seifert. K. and Okada, G. 2010. International Commission on the Taxonomy of Fungi (ICTF). IMA Fungus 1: 11-12.

Okabe, S., Oshiki, M., Kamagata, Y., Yamaguchi, N., Toyofuku, M., Yawata, Y., Tashiro, Y., Nomura, N., Ohta, H., Ohkuma, M., Hiraishi, A., and Minamisawa, K. 2010. A great leap forward in microbial ecology. Microbes Environ. 25: 230-240.

Shintani, M., Takahashi, Y., Yamane, H., and Nojiri, H. 2010. The behavior and significance of degradative plasmids belonging to Inc groups in Pseudomonas within natural environments and microcosms. Microbes Environ. 25: 253-265.

Sakamoto, M., Tanner, A. C. R, and Benno, Y. 2010. Tannerella Sakamoto, Suzuki, Umeda, Ishikawa and Benno 2002, 848^VP, In: Krieg, N. R., Staley, J. T., Brown, D. R., Hedlund, B. P., Paster, B. J., Ward, N. L., Ludwig, W., and Whitman, W. B. (eds.), Bergey's Manual of Systematic Bacteriology Second Edition Volume Four, pp. 78-85, Springer, New York.

Ohkuma, M. and Brune, A. 2010. Diversity, structure, and evolution of the termite gut microbial community, In: Bignell, D. E., Roisin, Y., and Lo, N. (eds.), Biology of Termites: A Modern Synthesis, pp. 413-438, Springer Science+Business Media, Dordrecht.

Brune, A. and Ohkuma, M. 2010. Role of the termite gut-microbiota in symbiotic digestion, In: Bignell, D. E., Roisin, Y., and Lo, N. (eds.), Biology of Termites: A Modern Synthesis, pp. 439-475, Springer Science+Business Media, Dordrecht.

Hongo, Y. and Ohkuma, M. 2010. Termite gut flagellates and their methanogenic and eubacterial symbionts, In: Hackstein, J. H. P. (ed.), Microbiology Monographs Vol. 19, (Endo)symbiotic Methanogenic Archaea, pp. 55-79, Springer-Verlag, Berlin.

Noda, S., Hongoh, Y., Sato, T., and Ohkuma, M. 2009. Complex coevolutionary history of symbiotic Bacteroidales bacteria of various protists in the gut of termites. BMC Evol. Biol. 9: 158. PubMed ID: 19586555.

Kajiura, T., Takeda, T., Sakata, S., Sakamoto, M., Hashimoto, M., Suzuki, H., Suzuki, M., and Benno, Y. 2009. Change of intestinal microbiota with elemental diet and its impact on therapeutic effects in a murine model of chronic colitis. Dig. Dis. Sci. 54: 1892-1900. PubMed ID: 19058004.

Sato, T., Hongoh, Y., Noda, S., Hattori, S., Ui, S., and Ohkuma, M. 2009. Candidatus Desulfovibrio trichonymphae, a novel intracellular symbiont of the flagellate Trichonympha agilis in termite gut. Environ. Microbiol. 11: 1007-1015. PubMed ID: 19170725.

Takashima, M., Sugita, T., Toriumi, Y., and Nakase, T. 2009. Cryptococcus tepidarius sp. nov., a thermotolerant yeast species isolated from a stream from a hot-spring area in Japan. Int. J. Syst. Evol. Microbiol. 59: 181-185. PubMed ID: 19126744.

Sakamoto, M., Kumada, H., Hamada, N., Takahashi, Y., Okamoto, M., Bakir, M. A., and Benno, Y. 2009. Prevotella falsenii sp. nov., a Prevotella intermedia-like organism isolated from monkey dental plaque. Int. J. Syst. Evol. Microbiol. 59: 319-322. PubMed ID: 19196771.

Chamroensaksri, N., Tanasupawat, S., Akaracharanya, A., Visessanguan, W., Kudo, T., and Itoh, T. 2009. Salinivibrio siamensis sp. nov., from fermented fish (pla-ra) in Thailand. Int. J. Syst. Evol. Microbiol. 59: 880-885. PubMed ID: 19329624.

Sakamoto, M., Takagaki, A., Matsumoto, K., Kato, Y., Goto, K., and Benno, Y. 2009. Butyricimonas synergistica gen. nov., sp. nov. and Butyricimonas virosa sp. nov., butyric acid-producing bacteria in the family 'Porphyromonadaceae' isolated from rat faeces. Int. J. Syst. Evol. Microbiol. 59: 1748-1753. PubMed ID: 19542124.

Yang, Y., Itoh, T., Yokobori, S., Itahashi, S., Shimada, H., Satoh, K., Ohba, Hirofumi, Narumi, I., and Yamagishi, A. 2009. Deinococcus aerius sp. nov., isolated from the high atmosphere. Int. J. Syst. Evol. Microbiol. 59: 1862-1866. PubMed ID: 19567578.

Sakamoto, M., Suzuki, N., Matsunaga, N., Koshihara, K., Seki, M., Komiya, H., and Benno, Y. 2009. Parabacteroides gordonii sp. nov., isolated from human blood cultures. Int. J. Syst. Evol. Microbiol. 59: 2843-2847. PubMed ID: 19628614.

Sakamoto, M., Siqueira, J. F., Jr., Rôças, I. N., and Benno, Y. 2009. Diversity of spirochetes in endodontic infections. J. Clin. Microbiol. 47: 1352-1357. PubMed ID: 19261792.

Mayanagi, G., Kimura, M., Nakaya, S., Hirata, H., Sakamoto, M., Benno, Y., and Shimauchi, H. 2009. Probiotic effects of orally administered Lactobacillus salivarius WB21-containing tablets on periodontopathic bacteria: a double-blinded, placebo-controlled, randomized clinical trial. J. Clin. Periodontol. 36: 506-513. PubMed ID: 19453574.

Yang, X., Sugita, T., Takashima, M., Hiruma, M., Li, R., Sudo, H., Ogawa, H., and Ikeda, S. 2009. Differentiation of Trichophyton rubrum clinical isolates from Japanese and Chinese patients by randomly amplified polymorphic DNA and DNA sequence analysis of the non-transcribed spacer region of the rRNA gene. J. Dermatol. Sci. 54: 38-42. PubMed ID: 19162448.

Li, B., Furihata, K., Kudo, T., and Yokota, A. 2009. Kitasatospora saccharophila sp. nov. and Kitasatospora kazusanensis sp. nov., isolated from soil and transfer of Streptomyces atroaurantiacus to the genus Kitasatospora as Kitasatospora atroaurantiaca comb. nov. J. Gen. Appl. Microbiol. 55: 19-26. PubMed ID: 19282629.

Hamana, K., Hayashi, H., Niitsu, M., and Itoh, T. 2009. Polyamine analysis of thermophilic, acidophilic, alkaliphilic and radio-tolerant bacteria belonging to the domain Bacteria and methanogens, thermophiles and extreme halophiles belonging to the domain Archaea -Polyamine catalogues of bacterial (eubacterial) and archaeal (archaebacterial) extremophiles IV-. J. Jpn. Soc. Extremophiles 8: 59-68.

Sugiyama, Y., Ito, Y., Suzuki, M., and Hirota, A. 2009. Indole derivatives from a marine sponge-derived yeast as DPPH radical scavengers. J. Nat. Prod. 72: 2069-2071. PubMed ID: 19943625.

Matsumoto. M., Sakamoto. M., and Benno. Y. 2009. Dynamics of fecal microbiota in hospitalized elderly fed probiotic LKM512 yogurt. Microbiol. Immunol. 53: 421-432. PubMed ID: 19659926.

Noda, S., Mantini, C., Bordereau, C., Kitade, O., Dolan, M. F., Viscogliosi, E., and Ohkuma, M. 2009. Molecular phylogeny of parabasalids with emphasis on the order Cristamonadida and its complex morphological evolution. Mol. Phylogenet. Evol. 52: 217-224. PubMed ID: 19306937.

Yoshinari, S., Shiba, T., Inaoka, D., Itoh, T., Kurisu, G., Harada, S., Kita, K., and Watanabe, Y. 2009. Functional importance of Crenarchaea-specific extra-loop revealed by an X-ray structure of a heterotetrameric crenarchaeal splicing endonuclease. Nucleic Acids Res. 37: 4787-4798. PubMed ID: 19515941.

Mantini, C., Dalia-Cornette, J., Noda, S., Van, Der, Heijden, H. M. J. F., Capron, M., Dei-Cas, E., Landman, W. J. M., Ohkuma, M., and Viscogliosi, E. 2009. Molecular identification and phylogenetic relationships of trichomonad isolates of galliform birds inferred from nuclear small subunit rRNA gene sequences. Parasitol. Res. 106: 163-170. PubMed ID: 19806364.

Atsumi, H., Yoshimoto, K., Saito, S., Ohkuma, M., Maeda, M., and Nagasaki, Y. 2009. Luminescence-based colorimetric discrimination of single-nucleotide transversions by the combined use of the derivatives of DOTA-conjugated naphthyridine and its terbium complex. Tetrahedron Lett. 50: 2177-2180.

Promnuan, Y., Kudo, T., and Chantawannakul, P. 2009. Actinomycetes isolated from beehives in Thailand. World J. Microbiol. Biotechnol. 25: 1685-1689.

Okada, G. 2009. Online manuscript submission for Mycoscience using Editorial Manager. Mycoscience 50: 83.

Ozutsumi, Y., Sakamoto, M., Itabashi, H., and Benno, Y. 2008. Effect of ruminal protozoa on fecal microbiota in cattle using terminal restriction fragment length polymorphism. Anim. Sci. J. 79: 29-34.

Endoh, R., Suzuki, M., and Benno, Y. 2008. Ambrosiozyma kamigamensis sp. nov. and A. neoplatypodis sp. nov., two new ascomycetous yeasts from ambrosia beetle galleries. Antonie van Leeuwenhoek 94: 365-376. PubMed ID: 18516700.

Endoh, R., Suzuki, M., Benno, Y., and Futai, K. 2008. Candida kashinagacola sp. nov., C. pseudovanderkliftii sp. nov. and C. vanderkliftii sp. nov., three new yeasts from ambrosia beetle-associated sources. Antonie van Leeuwenhoek 94: 389-402. PubMed ID: 18537038.

Odamaki, T., Xiao, J.-Z., Sakamaoto, M., Kondo, S., Yaesima, T., Iwatsuki, K., Togashi, H., Enomoto, T., and Benno, Y. 2008. Distribution of different species of the Bacteroides fragilis group in individuals with Japanese cedar pollinosis. Appl. Environ. Microbiol. 74: 6814-6817. PubMed ID: 18791010.

Suezawa, Y., Suzuki, M., and Mori, H. 2008. Genotyping of a miso and soy sauce fermentation yeast, Zygosaccharomyces rouxii, based on sequence analysis of the partial 26S ribosomal RNA gene and two internal transcribed spacers. Biosci. Biotechnol. Biochem. 72: 2452-2455. PubMed ID: 18776675.

Enache, M., Itoh, T., Kamekura, M., Popescu, G., and Dumitru, L. 2008. Halophilic archaea isolated from man-made young (200 years) salt lakes in Slanic, Prahova, Romania. Cent. Eur. J. Biol. 3: 388-395.

Seifert, K. A., Rehner, Stephen. A., Sugita, T., and Okada, G. 2008. Spicellum ovalisporum Seifert & Rehner, sp. nov. Fungal Planet 28: 1-4.

Bakir, M. A., Kudo, T., and Benno, Y. 2008. Microbacterium hatanonis sp. nov., isolated as a contaminant of hairspray. Int. J. Syst. Evol. Microbiol. 58: 654-658. PubMed ID: 18319473.

Jongrungruangchok, S., Tanasupawat, S., and Kudo, T. 2008. Micromonospora chaiyaphumensis sp. nov., isolated from Thai soils. Int. J. Syst. Evol. Microbiol. 58: 924-928. PubMed ID: 18398196.

Maruo, T., Sakamoto, M., Ito, C., Toda, T., and Benno, Y. 2008. Adlercreutzia equolifaciens gen. nov., sp. nov., an equol-producing bacterium isolated from human faeces, and emended description of the genus Eggerthella. Int. J. Syst. Evol. Microbiol. 58: 1221-1227. PubMed ID: 18450717.

Thawai, C., Tanasupawat, S., and Kudo, T. 2008. Micromonospora pattaloongensis sp. nov., isolated from a Thai mangrove forest. Int. J. Syst. Evol. Microbiol. 58: 1516-1521. PubMed ID: 18599686.

Ara, I., Matsumoto, A., Bakir, M. A., Kudo, T., Ōmura, S., and Takahashi, Y. 2008. Pseudosporangium ferrugineum gen. nov., sp. nov., a new member of the family Micromonosporaceae. Int. J. Syst. Evol. Microbiol. 58: 1644-1652. PubMed ID: 18599710.

Ara, I., Matsumoto, A., Bakir, M. A., Kudo, T., Ōmura, S., and Takahashi, Y. 2008. Actinomadura bangladeshensis sp. nov. and Actinomadura chokoriensis sp. nov. Int. J. Syst. Evol. Microbiol. 58: 1653-1659. PubMed ID: 18599711.

Ara, I., Bakir, M. A., and Kudo, T. 2008. Transfer of Catellatospora koreensis Lee et al. 2000 as Catelliglobosispora koreensis gen. nov., comb. nov. and Catellatospora tsunoense Asano et al. 1989 as Hamadaea tsunoensis gen. nov., comb. nov., and emended description of the genus Catellatospora Asano and Kawamoto 1986 emend. Lee and Hah 2002. Int. J. Syst. Evol. Microbiol. 58: 1950-1960. PubMed ID: 18676486.

Yachai, M., Tanasupawat, S., Itoh, T., Benjkul, S., Visessanguan, W., and Valyasevi, R. 2008. Halobacterium piscisalsi sp. nov., from fermented fish (pla-ra) in Thailand. Int. J. Syst. Evol. Microbiol. 58: 2136-2140. PubMed ID: 18768619.

Tapingkae, W., Tanasupawat, S., Itoh, T., Parkin, K. L., Benjakul, S., Visessanguan, W., and Valyasevi, R. 2008. Natrinema gari sp. nov., a halophilic archaeon isolated from fish sauce in Thailand. Int. J. Syst. Evol. Microbiol. 58: 2378-2383. PubMed ID: 18842859.

Jongrungruangchok, S., Tanasupawat, S., and Kudo, T. 2008. Micromonospora krabiensis sp. nov., isolated from marine soil in Thailand. J. Gen. Appl. Microbiol. 54: 127-133. PubMed ID: 18497487.

Endoh, R., Suzuki, M., and Benno, Y. 2008. Pichia rarassimilans sp. nov., a novel yeast species isolated from body surface of the ambrosia beetle Platypus quercivorus. J. Gen. Appl. Microbiol. 54: 181-186. PubMed ID: 18654040.

Hamana, K., Itoh, T., Benno, Y., and Hayashi, H. 2008. Polyamine distribution profiles of new members of the phylum Bacteroides. J. Gen. Appl. Microbiol. 54: 229-236. PubMed ID: 18802322.

Ara, I., Matsumoto, A., Bakir, M. A., Kudo, T., Omura, S., and Takahashi, Y. 2008. Actinomadura maheshkhaliensis sp. nov., a novel actinomycete isolated from mangrove rhizosphere soil of Maheshkhali, Bangladesh. J. Gen. Appl. Microbiol. 54: 335-342. PubMed ID: 19164876.

Hamana, K., Hosoya, R., Yokota, A., Niitsu, M., Hayashi, H., and Itoh, T. 2008. Distribution of long linear and branched polyamines in the thermophiles belonging to the domain Bacteria. J. Jpn. Soc. Extremophiles 7: 10-20.

Hamana, K., Hosoya, R., Niitsu, M., Hayashi, H., and Itoh, T. 2008. Temperature and salt dependent long linear and branched polyamine syntheses in the thermophiles belonging to the domain Archaea. J. Jpn. Soc. Extremophiles 7: 21-27.

Ionata, E., Canganella, F., Bianconi, G., Benno, Y., Sakamoto, M., Capasso, A., Rossi, M., and La, Cara, F. 2008. A novel keratinase from Clostridium sporogenes bv. pennavorans bv. nov., a thermotolerant organism isolated from solfataric muds. Microbiol. Res. 163: 105-112. PubMed ID: 17085026.

Sakamoto, M., Siqueira, J. F., Jr., Rôças, I. N., and Benno,Y. 2008. Molecular analysis of the root canal microbiota associated with endodontic treatment failures. Oral Microbiol. Immunol. 23: 275-281. PubMed ID: 18582326.

Crous, P. W., Wood, A. R., Okada, G., and Groenewald, J. Z. 2008. Foliicolous microfungi occurring on Encephalartos. Persoonia 21: 135-146. PubMed ID: 20396583.

Enache, M., Itoh, T., Kamekura, M., Popescu, G., and Dumitru, L. 2008. Halophilic archaea of Haloferax genus isolated from anthropocentric Telega (Palada) salt lake. Proc. Rom. Acad. Ser. B 10: 11-16.

Harada, A., Ohkusa, T., Kushima, K., Sakamoto, M., Benno, Y., Beppu, K., Shibuya, T., Sakamoto, N., and Watanabe, S. 2008. Identification of bacteria from blood in febrile patients with ulcerative colitis by terminal restriction fragment length polymorphism profile analysis of 16S rRNA gene. Scad. J. Gastroenterol. 43: 423-430. PubMed ID: 18365907.

Ara, I. and Kudo, T. 2007. Krasilnikovia gen. nov., a new member of the family Micromonosporaceae and description of Krasilnikovia cinnamonea sp. nov. Actinomycetologica 21: 1-10.

Ara, I. and Kudo, T. 2007. Sphaerosporangium gen. nov., a new member of the family Streptosporangiaceae, with descriptions of three new species as Sphaerosporangium melleum sp. nov., Sphaerosporangium rubeum sp. nov. and Sphaerosporangium cinnabarinum sp. nov., and transfer of Streptosporangium viridialbum Nonomura and Ohara 1960 to Sphaerosporangium viridialbum comb. nov. Actinomycetologica 21: 11-21.

Matsumoto, M., Aranami, A., Ishige, A., Watanabe, K., and Benno, Y. 2007. LKM512 yogurt consumption improves the intestinal environment and induces the T-helper type 1 cytokine in adult patients with intractable atopic dermatitis. Clin. Exp. Allergy 37: 358-370. PubMed ID: 17359386.

Matsumoto, M., Hara, K., and Benno, Y. 2007. The influence of the immunostimulation by bacterial cell components derived from altered large intestinal microbiota on probiotic anti-inflammatory benefits. FEMS Immunol. Med. Microbiol. 49: 387-390. PubMed ID: 17378901.

Sakamoto, M., Kitahara, M., and Benno, Y. 2007. Parabacteroides johnsonii sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. 57: 293-296. PubMed ID: 17267966.

Sakamoto, M., Lan, P. T. N., and Benno, Y. 2007. Barnesiella viscericola gen. nov., sp. nov., a novel member of the family Porphyromonadaceae isolated from chicken caecum. Int. J. Syst. Evol. Microbiol. 57: 342-346. PubMed ID: 17267976.

Pakdeeto, A., Tanasupawat, S., Thawai, C., Moonmangmee, S., Kudo, T., and Itoh, T. 2007. Lentibacillus kapialis sp. nov., from fermented shrimp paste in Thailand. Int. J. Syst. Evol. Microbiol. 57: 364-369. PubMed ID: 17267980.

Burns, D. G., Janssen, P. H., Itoh, T., Kamekura, M., Li, Z., Jensen, G., Rodriguez-Valera, F., Bolhuis, H., and Dyall-Smith, M. L. 2007. Haloquadratum walsbyi gen. nov., sp. nov., the square haloarchaeon of Walsby, isolated from saltern crystallizers in Australia and Spain. Int. J. Syst. Evol. Microbiol. 57: 387-392. PubMed ID: 17267984.

Enache, M., Itoh, T., Kamekura, M., Teodosiu, G., and Dumitru, L. 2007. Haloferax prahovense sp. nov., an extremely halophilic archaeon isolated from a Romanian salt lake. Int. J. Syst. Evol. Microbiol. 57: 393-397. PubMed ID: 17267985.

Hayashi, H., Shibata, K., Sakamoto, M., Tomita, S., and Benno, Y. 2007. Prevotella copri sp. nov. and Prevotella stercorea sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. 57: 941-946. PubMed ID: 17473237.

Hayashi, H., Shibata, K., Bakir, M. A., Sakamoto, M., Tomita, S., and Benno, Y. 2007. Bacteroides coprophilus sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. 57: 1323-1326. PubMed ID: 17551051.

Tanasupawat, S., Namwong, S., Kudo, T., and Itoh, T. 2007. Piscibacillus salipiscarius gen. nov., sp. nov., a moderately halophilic bacterium from fermented fish (pla-ra) in Thailand. Int. J. Syst. Evol. Microbiol. 57: 1413-1417. PubMed ID: 17625167.

Aizawa, T., Ve, N. B., Kimoto, K., Iwabuchi, N., Sumida, H., Hasegawa, I., Sasaki, S., Tamura, T., Kudo, T., Suzuki, K., Nakajima, M., and Sunairi, M. 2007. Curtobacterium ammoniigenes sp. nov., an ammonia-producing bacterium isolated from plants inhabiting acidic swamps in actual acid sulfate soil areas of Vietnam. Int. J. Syst. Evol. Microbiol. 57: 1447-1452. PubMed ID: 17625173.

Hoshino, Y., Watanabe, K., Iida, S., Suzuki, S., Kudo, T., Kogure, T., Yazawa, K., Ishikawa, J., Kroppenstedt, R. M., and Mikami, Y. 2007. Nocardia terpenica sp. nov., isolated from Japanese patients with nocardiosis. Int. J. Syst. Evol. Microbiol. 57: 1456-1460. PubMed ID: 17625175.

Ara, I., Kudo, T., Matsumoto, A., Takahashi, Y., and Omura, S. 2007. Nonomuraea bangladeshensis sp. nov. and Nonomuraea coxensis sp. nov. Int J Syst. Evol. Microbiol. 57: 1504-1509. PubMed ID: 17625184.

Pikuta, E. V., Marsic, D., Itoh, T., Bej, A. K., Tang, J., Whitman, W. B., Ng, J. D., Garriott, O. K., and Hoover, R. B. 2007. Thermococcus thioreducens sp. nov., a novel hyperthermophilic, obligately sulfur-reducing archaeon from a deep-sea hydrothermal vent. Int. J. Syst. Evol. Microbiol. 57: 1612-1618. PubMed ID: 17625204.

Sakamoto, M., Ohkusu, K., Masaki, T., Kako, H., Ezaki, T., and Benno, Y. 2007. Prevotella pleuritidis sp. nov., isolated from pleural fluid. Int. J. Syst. Evol. Microbiol. 57: 1725-1728. PubMed ID: 17684245.

Pakdeeto, A., Tanasupawat, S., Thawai, C., Moonmangmee, S., Kudo, T., and Itoh, T. 2007. Salinicoccus siamensis sp. nov., isolated from fermented shrimp paste in Thailand. Int. J. Syst. Evol. Microbiol. 57: 2004-2008. PubMed ID: 17766863.

Namwong, S., Tanasupawat, S., Visessanguan, W., Kudo, T., and Itoh, T. 2007. Halococcus thailandensis sp. nov., from fish sauce in Thailand. Int. J. Syst. Evol. Microbiol. 57: 2199-2203. PubMed ID: 17911282.

Enache, M., Itoh, T., Fukushima, T., Usami, R., Dumitru, L., and Kamekura, M. 2007. Phylogenetic relationships within the family Halobacteriaceae inferred from rpoB' gene and protein sequences. Int. J. Syst. Evol. Microbiol. 57: 2289-2295. PubMed ID: 17911299.

Itoh, T., Yoshikawa, N., and Takashina, T. 2007. Thermogymnomonas acidicola gen. nov., sp. nov., a novel thermoacidophilic, cell wall-less archaeon in the order Thermoplasmatales, isolated from a solfataric soil in Hakone, Japan. Int. J. Syst. Evol. Microbiol. 57: 2557-2561. PubMed ID: 17978217.

Ishiko, A., Dekio, I., Fujimoto, A., Kameyama, K., Sakamoto, M., Benno, Y., Amagai, M., and Nishikawa, T. 2007. Abnormal keratin expression in circumscribed palmar hypokeratosis. J. Am. Acad. Dermatol. 57: 285-291. PubMed ID: 17553594.

Ara, I. and Kudo, T. 2007. Two new species of the genus Micromonospora: Micromonospora chokoriensis sp. nov. and Micromonospora coxensis sp. nov., isolated from sandy soil. J. Gen. Appl. Microbiol. 53: 29-37. PubMed ID: 17429159.

Ara, I. and Kudo, T. 2007. Luedemannella gen. nov., a new member of the family Micromonosporaceae and description of Luedemannella helvata sp. nov. and Luedemannella flava sp. nov. J. Gen. Appl. Microbiol. 53: 39-51. PubMed ID: 17429160.

Ara, I., Kudo, T., Matsumoto, A., Takahashi, Y., and Omura, S. 2007. Nonomuraea maheshkhaliensis sp. nov., a novel actinomycete isolated from mangrove rhizosphere mud. J. Gen. Appl. Microbiol. 53: 159-166. PubMed ID: 17726296.

Thawai, C., Tanasupawat, S., Suwanborirux, K., Itoh, T., and Kudo, T. 2007. Micromonospora narathiwatensis sp. nov., from Thai peat swamp forest soils. J. Gen. Appl. Microbiol. 53: 287-293. PubMed ID: 18057819.

Odamaki, T., Xiao, J.-Z., Iwabuchi, N., Sakamoto. M., Takahashi, N., Kondo, S., Iwatsuki, K., Kokubo, S., Togashi, H., Enomoto, T., and Benno, Y. 2007. Fluctuation of fecal microbiota in individuals with Japanese cedar pollinosis during the pollen season and influence of probiotic intake. J. Investig. Allergol. Clin. Immunol. 17: 92-100. PubMed ID: 17460947.

Odamaki, T., Xiao, J.-Z., Iwabuchi, N., Sakamoto, M., Takahashi, N., Kondo, S., Miyaji, K., Iwatsuki, K., Togashi, H., Enomoto, T., and Benno, Y. 2007. Influence of Bifidobacterium longum BB536 intake on faecal microbiota in individuals with Japanese cedar pollinosis during the pollen season. J. Med. Microbiol. 56: 1301-1308. PubMed ID: 17893165.

Dekio, I., Sakamoto. M., Hayashi, H., Amagai, M., Suematsu, M., and Benno, Y. 2007. Characterization of skin microbiota in patients with atopic dermatitis and in normal subjects using 16S rRNA gene-based comprehensive analysis. J. Med. Microbiol. 56: 1675-1683. PubMed ID: 18033838.

Nakayama, H., Shimamura, T., Imagawa, T., Shirai, N., Itoh, T., Sako, Y., Miyano, M., Sakuraba, H., Ohshima, T., Nomura, N., and Tsuge, H. 2007. Structure of a hyperthermophilic archaeal homing endonuclease, I-Tsp061I: contribution of cross-domain polar networks to thermostability. J. Mol. Biol. 365: 362-378. PubMed ID: 17069851.

Hasegawa, H., Sakamoto, M., and Benno, Y. 2007. Bacteroides uniformis as the dominant bacterial species involved in activation of ginseng protopanaxadial saponins in human intestines. J. Trad. Med. 24: 140-143.

Kajikazawa, T., Sugita, T., Takashima, M., and Nishikawa, A. 2007. Detection of pathogenic yeasts from processed fresh edible sea urchins sold in a fish market. Nippon Ishinkin Gakkai Zasshi (Jpn. J. Med. Mycol.) 48: 169-172. PubMed ID: 17975532.

Matsumoto, M. and Benno, Y. 2007. The relationship between microbiota and polyamine concentration in the human intestine: a pilot study. Microbiol. Immunol. 51: 25-35. PubMed ID: 17237596.

Matsumoto, M., Kakizoe, K., and Benno, Y. 2007. Comparison of fecal microbiota and polyamine concentration in adult patients with intractable atopic dermatitis and healthy adults. Microbiol. Immunol. 51: 37-46. PubMed ID: 17237597.

Kibe, R., Sakamoto, M., Yokota, H., and Benno, Y. 2007. Characterization of the inhabitancy of mouse intestinal bacteria (MIB) in rodents and humans by real-time PCR with group-specific primers. Microbiol. Immunol. 51: 349-357. PubMed ID: 17446674.

Sugita, T., Takashima, M., Sano, A., Nishimura, K., Kinebuchi, T., Yamaguchi, S., and Osanai, H. 2007. Cryptococcus arboriformis sp. nov., a novel anamorphic basidiomycetous yeast species isolated from a patient's urine. Microbiol. Immunol. 51: 543-545. PubMed ID: 17579264.

Okamoto, M., Benno, Y., Leung, K. P., and Maeda, N. 2007. Metascardovia criceti gen. nov. sp. nov., from hamster dental plaque. Microbiol. Immunol. 51: 747-754. PubMed ID: 17704637.

Sakamoto, M., Siqueira, J. F., Jr., Rôças, I. N., and Benno, Y. 2007. Bacterial reduction and persistence after endodontic treatment procedures. Oral Microbiol. Immunol. 22: 19-23. PubMed ID: 17241166.

Jongrungruangchok, S., Tanasupawat, S., Kitakoop, P., Bavovada, R., Kobayashi, H., and Kudo, T. 2006. Identification of Streptomyces and Kitasatospora strains from Thai soils with geldanamycin production strain. Actinomycetologica 20: 10-14.

Nakanishi, Y., Murashima, K., Ohara, H., Suzuki, T., Hayashi, H., Sakamoto, M., Fukasawa, T., Kubota, H., Hosono, A., Kono, T., Kaminogawa, S., and Benno, Y. 2006. Increase in terminal restriction fragments of Bacteroidetes-derived 16S rRNA genes after administration of short-chain fructooligosaccharides. Appl. Environ. Microbiol. 72: 6271-6276. PubMed ID: 16957254.

Salminen, S., Benno, Y., and de Vos, W. M. 2006. International colonisation, microbiota, and future probiotics? Asia. Pac. J. Clin. Nutr. 15: 558-562.

Yoshinari, S., Itoh, T., Hallam, S. J., DeLong, E. F., Yokobori, S., Yamagishi, A., Oshima, T., Kita, K., and Watanabe, Y. 2006. Archaeal pre-mRNA splicing: A connection to hetero-oligomeric splicing endonuclease. Biochem. Biophys. Res. Commun. 346: 1024-1032. PubMed ID: 16781672.

Hashimoto, K., Kawasaki, H., Akazawa, K., Nakamura, J., Asakura, Y., Kudo, T., Sakuradani, E., Shimizu, S., and Nakamatsu, T. 2006. Changes in composition and content of mycolic acids in glutamate-overproducing Corynebacterium glutamicum. Biosci. Biotechnol. Biochem. 70: 22-30. PubMed ID: 16428817.

Suezawa, Y., Kimura, I., Inoue, M., Gohda, N., and Suzuki, M. 2006. Identification and typing of miso and soy sauce fermentation yeasts, Candida etchellsii and C. versatilis, based on sequence analyses of the D1D2 domain of the 26S ribosomal RNA gene, and the region of internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2. Biosci. Biotechnol. Biochem. 70: 348-354. PubMed ID: 16495649.

Matsumoto, M. and Benno, Y. 2006. Anti-inflammatory metabolite production in the gut from the consumption of probiotic yogurt containing Bifidobacterium animalis subsp. lactis LKM512. Biosci. Biotechnol. Biochem. 70: 1287-1292. PubMed ID: 16794305.

Hayashi, H., Sakamoto, M., Kitahara, M., and Benno, Y. 2006. Diversity of the Clostridium coccoides group in human fecal microbiota as determined by 16S rRNA gene library. FEMS Microbiol. Lett. 257: 202-207. PubMed ID: 16553854.

Tomita, S., Shirasaki, N., Matsuyama, J., Benno, Y., and Kiyosawa, I. 2006. Growth behavior of Clostridium perfringens cells aggregated by bovine lactoferrin in the presence of lipoteichoic acid. Food Preserv. Sci. 32: 85-89.

Maruo, T., Sakamoto, M., Toda, T., and Benno, Y. 2006. Monitoring the cell number of Lactococcus lactis subsp. cremoris FC in human feces by real-time PCR with strain-specific primers designed using the RAPD technique. Int. J. Food Microbiol. 110: 69-76. PubMed ID: 16737755.

Bakir, M. A., Kitahara, M., Sakamoto, M., Matsumoto, M., and Benno, Y. 2006. Bacteroides intestinalis sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. 56: 151-154. PubMed ID: 16403880.

Ara, I. and Kudo, T. 2006. Three novel species of the genus Catellatospora, Catellatospora chokoriensis sp. nov., Catellatospora coxensis sp. nov. and Catellatospora bangladeshensis sp. nov., and transfer of Catellatospora citrea subsp. methionotrophica Asano and Kawamoto 1988 to Catellatospora methionotrophica sp. nov., comb. nov. Int. J. Syst. Evol. Microbiol. 56: 393-400. PubMed ID: 16449446.

Bakir, M. A., Kitahara, M., Sakamoto, M., Matsumoto, M., and Benno, Y. 2006. Bacteroides finegoldii sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. 56: 931-935. PubMed ID: 16627634.

Sakamoto, M. and Benno, Y. 2006. Reclassification of Bacteroides distasonis, Bacteroides goldsteinii and Bacteroides merdae as Parabacteroides distasonis gen. nov., comb.nov., Parabacteroides goldsteinii comb. nov. and Parabacteroides merdae comb. nov. Int. J. Syst. Evol. Microbiol. 56: 1599-1605. PubMed ID: 16825636.

Bakir, M. A., Sakamoto, M. Kitahara, M., Matsumoto, M., and Benno, Y. 2006. Bacteroides dorei sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. 56: 1639-1643. PubMed ID: 16825642.

Thawai, C., Tanasupawat, S., Itoh, T., and Kudo, T. 2006. Actinocatenispora thailandica gen. nov., sp. nov., a new member of the family Micromonosporaceae. Int. J. Syst. Evol. Microbiol. 56: 1789-1794. PubMed ID: 16902009.

Kageyama, A., Iida, S., Yazawa, K., Kudo, T., Suzuki, S., Koga, T., Saito, H., Inagawa, H., Wada, A., Kroppenstedt, R. M., and Mikami, Y. 2006. Gordonia araii sp. nov. and Gordonia effusa sp. nov., isolated from patients in Japan. Int. J. Syst. Evol. Microbiol. 56: 1817-1821. PubMed ID: 16902014.

Tanasupawat, S., Pakdeeto, A., Namwong, S., Thawai, C., Kudo, T., and Itoh, T. 2006. Lentibacillus halophilus sp. nov., from fish sauce in Thailand. Int. J. Syst. Evol. Microbiol. 56: 1859-1863. PubMed ID: 16902021.

Pikuta, E. V., Itoh, T., Krader, P., Tang, J., Whitman, W. B., and Hoover, R. B. 2006. Anaerovirgula multivorans gen. nov., sp. nov., a novel spore-forming, alkaliphilic anaerobe isolated from Owens Lake, California, USA. Int. J. Syst. Evol. Microbiol. 56: 2623-2629. PubMed ID: 17082402.

Lan, P. T. N., Sakamoto, M., Sakata, S., and Benno, Y. 2006. Bacteroides barnesiae sp. nov., Bacteroides salanitronis sp. nov. and Bacteroides gallinarum sp. nov., isolated from chicken caecum. Int. J. Syst. Evol. Microbiol. 56: 2853-2859. PubMed ID: 17158987.

Degawa, Y., Shibanuma, K., and Benno, Y. 2006. The proliferation factors affecting the growth of intestinal bifidobacterium in the presence of corn-fiber components of containing hydrolyzed oligosaccharides. Int. J. Probiot. Prebiot. 1: 203-212.

Asami, Y., Kakeya, H., Okada, G., Toi, M., and Osada, H. 2006. RK-95113, a new angiogenesis inhibitor produced by Aspergillus fumigatus. J. Antibiot. 59: 724-728. PubMed ID: 17256472.

Fungsin, B., Takashima, M., Sugita, T., Artjariyasripong, S., Potacharoen, W., Tanticharoen, M., and Nakase, T. 2006. Bullera koratensis sp. nov. and Bullera lagerstroemiae sp. nov., two new ballistoconidium-forming yeast species in the Trichosporonales clade isolated from plant leaves in Thailand. J. Gen. Appl. Microbiol. 52: 73-81. PubMed ID: 16778350.

Gueimonde, M., Sakata, S., Kalliomaki, M., Isolauri, E., Benno, Y., and Salminen, S. 2006. Effect of maternal consumption of Lactobacillus GG on transfer and establishment of fecal bifidobacterial microbiota in neonates. J. Pediatr. Gastroenterol. Nutr. 42: 166-170. PubMed ID: 16456409.

Hasegawa, H. and Benno, Y. 2006. Clinical evaluation of probiotic Lactobacillus paracasei A221 for standardizing ginseng-hydrolyzing potentials of human intestinal bacteria. J. Trad. Med. 23: 42-46.

Hosoya, R., Yokoyama, Y., Hamana, K., and Itoh, T. 2006. Polyamine analysis within the eubacterial thirteen phyla Acidobacteria, Actinobacteria, Chlorobi, Chloroflexi, Chrysiogenetes, Deferribacteres, Fibrobacteres, Firmicutes, Fusobacteria, Gemmatimonadetes, Nitrospirae, Planctomycetes, and Verrucomicrobia. Microbiol. Cult. Collect. 22: 21-33.

Sakata, S., Ryu, C. S., Kitahara, M., Sakamoto, M., Hayashi, H., Fukuyama, M., and Benno, Y. 2006. Characterization of the genus Bifidobacterium by automated ribotyping and 16S rRNA gene sequences. Microbiol. Immunol. 50: 1-10. PubMed ID: 16428867.

Sugita, T., Takashima, M., Poonwan, N., and Mekha, N. 2006. Candida pseudohaemulonii sp. nov., an amphotericin B- and azole-resistant yeast species, isolated from the blood of a patient from Thailand. Microbiol. Immunol. 50: 469-473. PubMed ID: 16785719.

Sakuma, K., Kitahara, M., Kibe, R., Sakamoto, M., and Benno, Y. 2006. Clostridium glycyrrhizinilyticum sp. nov., a glycyrrhizin-hydrolysing bacterium isolated from human faeces. Microbiol. Immunol. 50: 481-485. PubMed ID: 16858139.

Takahashi, H., Fujita, T., Suzuki, Y., and Benno, Y. 2006. Monitoring and survival of Lactobacillus gasseri SBT2055 in the human intestinal tract. Microbiol. Immunol. 50: 867-870. PubMed ID: 17116981.

Ibrahim, F., Salminen, S., Mykkanen, H., El-Nezami, H., Salminen, E., Ma, J., Ling, W. H., Benno, Y., and Tahvonen, R. 2006. Cadmium and lead elimination in young male chinese students a probiotic intervention study. Nutra foods 5: 5-9.

Sakamoto, M., Rôças, I. N., Siqueira, J. F., Jr., and Benno, Y. 2006. Molecular analysis of bacteria in asymptomatic and symptomatic endodontic infections. Oral Microbiol. Immunol. 21: 112-122. PubMed ID: 16476021.

Nomura, T., Ohkusa, T., Okayasu, I., Yoshida, T., Sakamoto, M., Hayashi, H., Benno, Y., Hirai, S., Hojo, M., Kobayashi, O., Terai, T., Miwa, H., Takei, Y., Ogihara, T., and Sato, N. 2005. Mucosa-associated bacteria in ulcerative colitis before and after antibiotic combination therapy. Aliment. Pharmacol. Ther. 21: 1017-1027. PubMed ID: 15813838.

Peter, G., Tornai-Lehoczki, J., Suzuki, M., and Dlauchy, D. 2005. Metschnikowia viticola sp. nov., a new yeast species from grape. Antonie van Leeuwenhoek 87: 155-160. PubMed ID: 15723177.

Kibe, R., Sakamoto, M., Yokota, H., Ishikawa, H., Aiba, Y., Koga, Y., and Benno, Y. 2005. Movement and fixation of intestinal microbiota after administration of human feces to germfree mice. Appl. Environ. Microbiol. 71: 3171-3178. PubMed ID: 15933018.

Ozutsumi, Y., Hayashi, H., Sakamoto, M., Itabashi, H., and Benno, Y. 2005. Culture-independent analysis of fecal microbiota in cattle. Biosci. Biotechnol. Biochem. 69: 1793-1797. PubMed ID: 16195605.

Hayashi, H., Abe, T., Sakamoto, M., Ohara, H., Ikemura, T., Sakka, K., and Benno, Y. 2005. Direct cloning of genes encoding novel xylanases from the human gut. Can. J. Microbiol. 51: 251-259. PubMed ID: 15920623.

Kurosawa, N., Itoh, Y. H., and Itoh, T. 2005. Thermus kawarayensis sp. nov., a new member of the genus Thermus, isolated from Japanese hot springs. Extremophiles 9: 81-84. PubMed ID: 15378402.

Itoh, T., Yamaguchi, T., Zhou, P., and Takashina, T. 2005. Natronolimnobius baerhuensis gen. nov., sp. nov. and Natronolimnobius innermongolicus sp. nov., novel haloalkaliphilic archaea isolated from soda lakes in lnner Mongolia, China. Extremophiles 9: 111-116. PubMed ID: 15841343.

Sakata, S., Tonooka, T., Ishizaki, S., Takada, M., Sakamoto, M., Fukuyama, M., and Benno, Y. 2005. Culture-independent analysis of fecal microbiota in infants, with special reference to Bifidobacterium species. FEMS Microbiol. Lett. 243: 417-423. PubMed ID: 15686844.

Namwong, S., Tanasupawat, S., Smitinont, T., Visessanguan, W., Kudo, T., and Itoh, T. 2005. Isolation of Lentibacillus salicampi strains and Lentibacillus juripiscarius sp. nov. from fish sauce in Thailand. Int. J. Syst. Evol. Microbiol. 55: 315-320. PubMed ID: 15653893.

Thawai, C., Tanasupawat, S., Itoh, T., Suwanborirux, K., Suzuki, K., and Kudo, T. 2005. Micromonospora eburnea sp. nov., isolated from a Thai peat swamp forest. Int. J. Syst. Evol. Microbiol. 55: 417-422. PubMed ID: 15653911.

Sakamoto, M., Huang, Y., Umeda, M., Ishikawa, I., and Benno, Y. 2005. Prevotella multiformis sp. nov., isolated from human subgingival plaque. Int. J. Syst. Evol. Microbiol. 55: 815-819. PubMed ID: 15774668.

Sakamoto, M., Umeda, M., Ishikawa, I., and Benno, Y. 2005. Prevotella multisaccharivorax sp. nov., isolated from human subgingival plaque. Int. J. Syst. Evol . Microbiol. 55: 1839-1843. PubMed ID: 16166675.

Kitahara, M., Sakamoto, M., Ike, M., Sakata, S., and Benno, Y. 2005. Bacteroides plebeius sp. nov. and Bacteroides coprocola sp. nov., isolated from human faeces. Int. J. Syst. Evol . Microbiol. 55: 2143-2147. PubMed ID: 16166722.

Singla, A. K., Mayilraj, S., Kudo, T., Krishnamurthi, S., Prasad, G. S., and Vohra, R. M. 2005. Actinoalloteichus spitiensis sp. nov., a novel actinobacterium isolated from a cold desert of the Indian Himalayas. Int. J. Syst. Evol . Microbiol. 55: 2561-2564. PubMed ID: 16280527.

Nakase, T., Lee, F., Am-in, S., Jindamorakot, S., Potacharoen, W., Tanticharoen, M., and Takashima, M. 2005. Sporobolomyces fushanensis sp. nov., a new species of ballistoconidium-forming yeast in the Microbotryum lineage isolated from a plant in Taiwan. J. Gen. Appl. Microbiol. 51: 41-45. PubMed ID: 15864760.

Thawai, C., Tanasupawat, S., Itoh, T., Suwanborirux, K., and Kudo, T. 2005. Micromonospora siamensis sp. nov., isolated from Thai peat swamp forest. J. Gen. Appl. Microbiol. 51: 229-234. PubMed ID: 16205030.

Nakase, T., Tsuzuki, S., Lee, F.-L., Jindamorakot, S., Jan-ngam, H., Am-in, S., Potacharoen, W., Tanticharoen, M., and Takashima, M. 2005. Sporobolomyces diospyroris sp. nov., Sporobolomyces lophatheri sp. nov. and Sporobolomyces pyrrosiae sp. nov., three new species of ballistoconidium-forming yeasts in the Agaricostilbum lineage isolated from plants in Taiwan. J. Gen. Appl. Microbiol. 51: 277-286. PubMed ID: 16314682.

Luong, D. T., Takashima, M., Ty, P. V., Dung, N. L., and Nakase, T. 2005. Bullera hoabinhensis sp. nov., a new ballistoconidiogenous yeast isolated from a plant leaf collected in Vietnam. J. Gen. Appl. Microbiol. 51: 335-342. PubMed ID: 16474193.

Kawabe, M., Kobayashi, Y., Okada, G., Yamaguchi, I., Teraoka, T., and Arie, T. 2005. Three evolutionary lineages of tomato wilt pathogen, Fusarium oxysporum f. sp. lycopersici, based on sequences of IGS, MAT1, and pg1, are each composed of isolates of a single mating type and a single or closely related vegetative compatibility group. J. Gen. Plant Pathol. 71: 263-272.

Hayashi, H., Takahashi, R., Nishi, T., Sakamoto, M., and Benno, Y. 2005. Molecular analysis of jejunal, ileal, caecal and rectosigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism. J. Med. Microbiol. 54: 1093-1101.

Dekio, I., Hayashi, H., Sakamoto, M., Kitahara, M., Nishikawa, T., Suematsu, M., and Benno, Y. 2005. Detection of potentially novel bacterial components of the human skin microbiota using culture-independent molecular profiling. J. Med. Microbiol. 54: 1231-1238. PubMed ID: 16278439.

Matsumoto, M., Sakamoto, M., Hayashi, H., and Benno, Y. 2005. Novel phylogenetic assignment database for terminal-restriction fragment length polymorphism analysis of human colonic microbiota. J. Microbiol. Methods 61: 305-319. PubMed ID: 15767007.

Kitahara, M., Sakata, S., and Benno, Y. 2005. Biodiversity of Lactobacillus sanfranciscensis strains isolated from five sourdoughs. Lett. Appl. Microbiol. 40: 353-357. PubMed ID: 15836738.

Sugita, T., Takeo, K., Hama, K., Virtudazo, E., Takashima, M., Nishikawa, A., Kucsera, J., Dorogi, J., Komori, S, Nakagaki, K., Vollekova, A, Slavikova, E., and Farkas, V. 2005. DNA sequence diversity of intergenic spacer I region in the non-lipid-dependent species Malassezia pachydermatis isolated from animals. Med. Mycol. 43: 21-26. PubMed ID: 15712605.

Tonooka, T., Sakata, S., Kitahara, M., Hanai, M., Ishizeki, S., Takada, M., Sakamoto, M., and Benno, Y. 2005. Detection and quantification of four species of the genus Clostridium in infant feces. Microbiol. Immunol. 49: 987-992. PubMed ID: 16301809.

Lopandic, K., Molnar, O., Suzuki, M., Pinsker, W., and Prillinger, H. 2005. Estimation of phylogenetic relationships within the Ascomycota on the basis of 18S rDNA sequences and chemotaxonomy. Mycol. Prog. 4: 205-214.

Sakamoto, M., Umeda, M., and Benno, Y. 2005. Molecular analysis of human oral microbiota. J. Periodontal Res. 40: 277-285. PubMed ID: 15853975.

Yabuuchi, E. and Kosako, Y. 2005. Sphingomonadaceae, In: Brenner, D. J., Krieg, N. R., and Staley, J. T. (eds.), Bergey's Manual of Systematic Bacteriology, 2nd ed., Vol. 2., Part C. The Alpha-, Beta-, Delta-, and Epsilonproteobacteria, p. 233, Springer, East Lansing.

Yabuuchi, E. and Kosako, Y. 2005. Sphingomonadales ord. nov., In: Brenner, D. J., Krieg, N. R., and Staley, J. T. (eds.), Bergey's Manual of Systematic Bacteriology, 2nd ed., Vol. 2., Part C. The Alpha-, Beta-, Delta-, and Epsilonproteobacteria, pp. 230-233, Springer, East Lansing.

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Pikuta, E. V., Itoh, T., and Hoover, R. B. 2005. Anaerobic decomposition of cellulose by alkaliphilic microbial community of Owens Lake, California, In: Astrobiology and Planetary Missions, The Intenational Society for Optical Engineering, San Diego.

Itoh, T., Yoshikawa, N., and Takashina, T. 2005. Diversity of thermophilic archaeal isolates from hot springs in Japan, In: Astrobiology and Planetary Missions, The Intenational Society for Optical Engineering, San Diego.

Itoh, T. 2005. Isolation and preservation of thermophiles and halophiles, In: Microbial Wonders in Special Environments, pp. 5-10, The Philippine Network of Microbial Culture Collections, Quezon.

Bloom, M. L., Monsalud, R. G., and Itoh, T. 2005. Culture preservation techniques, In: Microbial Wonders in Special Environments, pp. 18-24, The Philippine Network of Microbial Culture Collections, Quezon.

Thawai, C., Tanasupawat, S., Itoh, T., Suwanborirux, K., and Kudo, T. 2004. Micromonospora aurantionigra sp. nov., isolated from Thai peat swamp forest. Actinomycetologica 18: 8-14.

Saito, Y., Sakamoto, M., Takizawa, S., and Benno, Y. 2004. Monitoring the cell number and viability of Lactobacillus helveticus GCL1001 in human feces by PCR methods. FEMS Microbiol. Lett. 231: 125-130. PubMed ID: 14769476.

Kibe, R., Sakamoto, M., Hayashi, H., Yokota, H., and Benno, Y. 2004. Maturation of the murine cecal microbiota as revealed by terminal restriction fragment length polymorphism and 16S rRNA gene clone libraries. FEMS Microbiol. Lett. 235: 139-146. PubMed ID: 15158273.

Matsumoto, M., Ohishi, H., and Benno, Y. 2004. H⁺-ATPase activity in Bifidobacterium with special reference to acid tolerance. Int. J. Food Microbiol. 93: 109-113. PubMed ID: 15135587.

Sakamoto, M., Suzuki, M., Huang, Y., Umeda, M., Ishikawa, I., and Benno, Y. 2004. Prevotella shahii sp. nov. and Prevotella salivae sp. nov., isolated from the human oral cavity. Int. J. Syst. Evol. Microbiol. 54: 877-883. PubMed ID: 15143039.

Wang, Q.-M., Bai, F.-Y., Lu, H.-Z., Jia, J.-H., and Takashima, M. 2004. Bullera cylindrica sp. nov., Bullera hubeiensis sp. nov. and Bullera nakasei sp. nov., ballistoconidium-forming yeast species from plant leaves. Int. J. Syst. Evol. Microbiol. 54: 1877-1882. PubMed ID: 15388757.

Shibazaki, M., Tanaka, K., Nagai, K., Watanabe, M., Fujita, S., Suzuki, K., Okada, G., and Yamamoto, T. 2004. YM-92447 (spinosulfate A), a neuraminidase inhibitor produced by an unidentified pycnidial fungus. J. Antibiotics 57: 812-815. PubMed ID: 15745117.

Minamida, K., Sujaya, N., Tamura, A., Shigematsu, N., Sone, T., Yokota, A., Asano, K., Benno, Y., and Tomita, F. 2004. The effects of di-D-fructofuranose-1,2':2,3'-dianhydride (DFA III) administration on human intestinal microbiota. J. Biosci. Bioeng. 98: 244-250. PubMed ID: 16233700.

Seearunruangchai, A., Tanasupawat, S., Keeratipibul, S., Thawai, C., Itoh, T., and Yamada, Y. 2004. Identification of acetic acid bacteria isolated from fruits collected in Thailand. J. Gen. Appl. Microbiol. 50: 47-53. PubMed ID: 15057711.

Tanasupawat, S., Thawai, C., Yukphan, P., Moonmangmee, D., Itoh, T., Adachi, O., and Yamada, Y. 2004. Gluconobacter thailandicus sp. nov., an acetic acid bacterium in the α-Proteobacteria. J. Gen. Appl. Microbiol. 50: 159-167. PubMed ID: 15486825.

Hosoya, R., Hamana, K., Niitsu, M., and Itoh, T. 2004. Polyamine analysis for chemotaxonomy of thermophilic eubacteria: polyamine distribution profiles within the orders Aquificales, Thermotogales, Thermodesulfobacteriales, Thermales, Thermoanaerobacteriales, Clostridiales and Bacillales. J. Gen. Appl. Microbiol. 50: 271-287. PubMed ID: 15747232.

Sakamoto, M., Huang, Y., Ohnishi, M., Umeda, M., Ishikawa, I., and Benno, Y. 2004. Changes in oral microbial profiles after periodontal treatment as determined by molecular analysis of 16S rRNA genes. J. Med. Microbiol. 53: 563-571. PubMed ID: 15150339.

Kageyama, A., Yazawa, K., Kudo, T., Taniguchi, H., Nishimura, K., and Mikami, Y. 2004. First isolates of Nocardia abscessus from humans and soil in Japan. Nippon Ishinkin Gakkai Zasshi (Jpn. J. Med. Mycol.) 45: 17-21. PubMed ID: 14765097.

Matsumoto, M. and Benno, Y. 2004. Faecal microbiota and secretory immunogloblin A levels in adult patients with atopic dermatitis. Microb. Ecol. Health Dis. 16: 13-17.

Hayashi, H., Sakamoto, M., and Benno, Y. 2004. Evaluation of three different forward primers by terminal restriction fragment length polymorphism analysis for determination of fecal Bifidobacterium spp. in healthy subjects. Microbiol. Immunol. 48: 1-6. PubMed ID: 14734852.

Kitahara, M., Sakata, S., Sakamoto, M., and Benno, Y. 2004. Comparison among fecal secondary bile acid levels, fecal microbiota and Clostridium scindens cell numbers in Japanese. Microbiol. Immunol. 48: 367-375. PubMed ID: 15215624.

Sugita, T., Tajima, M., Takashima, M., Amaya, M., Saito, M. Tsuboi, R., and Nishikawa, A. 2004. A new yeast, Malassezia yamatoensis, isolated from a patient with seborrheic dermatitis, and its distribution in patients and healthy subjects. Microbiol. Immunol. 48: 579-583. PubMed ID: 15322337.

Sugita, T., Takeo, K., Ohkusu, M., Virtudazo, E., Takashima, M., Asako, E., Ohshima, F., Harada, S., Yanaka, C., Nishikawa, A., Majoros, L., and Sipiczki, M. 2004. Fluconazole-resistant pathogens Candida inconspicua and C. norvegensis: DNA sequence diversity of the rRNA intergenic spacer region, antifungal drug susceptibility, and extracellular enzymer production. Microbiol. Immunol. 48: 761-766. PubMed ID: 15502409.

Lan, P. T. N., Sakamoto, M., and Benno, Y. 2004. Effects of two probiotic Lactobacillus strains on jejunal and cecal microbiota of broiler chicken under acute heat stress condition as revealed by molecular analysis of 16S rRNA genes. Microbiol. Immunol. 48: 917-929. PubMed ID: 15611608.

Matsumoto, M. and Benno, Y. 2004. Consumption of Bifidobacterium lactis LKM512 yogurt reduces gut mutagenicity by increasing gut polyamine contents in healthy adult subjects. Mutat. Res. 568: 147-153. PubMed ID: 15542102.

Nakase, T., Tsuzuki, S., Lee, F.-L., Jindamorakot, S., Jan-ngam, H., Potacharoen, W., Tanticharoen, M., Kudo, T., and Takashima, M. 2004. Bullera begoniae sp. nov. and Bullera setariae sp. nov., two new species of ballistoconidium-forming yeasts in the Bullera variabillis (Bulleribasidium) cluster isolated from plants in Taiwan. Mycoscience 45: 287-294.

Nakase, T., Jan-ngam., H., Tsuzuki, S., Lee, F.-L., Jindamorakot, S., Potacharoen, W., Tanticharoen, M., and Takashima, M. 2004. Two new ballistoconidium-forming yeast species, Bullera melastomae and Bullera formosana, found in Taiwan. Syst. Appl. Microbiol. 27: 558-564. PubMed ID: 15490557.

Matsumoto, M. and Benno, Y. 2004. Anti-inflammatory and antimutagenic activity of polyamines produced by Bifidobacterium lactis LKM512. Curr. Topics Nutr. Res. 2: 219-226.

Hayashi, H., Ohara, H., Sakamoto, M., and Benno, Y. 2004. Cloning, sequencing, and expression of 1,4-β-xylanase from human fecal microbiota, In: Ohmiya, K., Sakka, K., Karita, S., Kimura, T., Sakka, M., and Onishi, Y. (eds.), Biotechnology of Lignocellulose Degradation and Biomass Utilization, pp. 412-417, UNI Publishers Co., Ltd., Tokyo.

Itoh, T. 2004. Diversity of thermophilic archaea isolated from hot springs in Japan, In: Watanabe, M. M., Suzuki, K.-I., and Seki, T. (eds.), Innovative Roles of Biological Resource Centers, pp. 137-140, JSCC & WFCC, Tsukuba.

Itoh, T. 2004. Diversity and evolutionary implication of archaea, the third domain of life, In: Sugisaka, M. and Tanaka, H. (eds.), Proc. of the Ninth Int. Symp. on Artifical Life and Robotics (AROB 9th '04), pp. 437-439, Organizing Committee of Int. Symp. on Artificial Life and Robotics, Oita.

Bai, F.-Y., Takashima, M., Zhao, J.-H., Jia, J.-H., and Nakase, T. 2003. Bullera anomala sp. nov. and Bullera pseudovariabilis sp. nov., two new ballistoconidium-forming yeast species from Yunnan, China. Antonie van Leeuwenhoek 83: 257-263. PubMed ID: 12776921.

Tominaga, T., Okuzawa, Y., Kato, S., and Suzuki, M. 2003. The first isolation of two types of trifluoroleucine resistant mutants of Saccharomyces servazzii. Biotechnol. Lett. 25: 1735-1738. PubMed ID: 14626417.

Itoh, T., Nomura, N., and Sako, Y. 2003. Distribution of 16S rRNA introns among the family Thermoproteaceae and their evolutionary implications. Extremophiles 7: 229-233. PubMed ID: 12768454.

Ueno, R., Urano, N., and Suzuki, M. 2003. Phylogeny of the non-photosynthetic green micro-algal genus Prototheca (Trebouxiophyceae, Chlorophyta) and related taxa inferred from SSU and LSU ribosomal DNA partial sequence data. FEMS Microbiol. Lett. 223: 275-280. PubMed ID: 12829298.

Laine, R., Salminen, S., Benno, Y., and Ouwehand, C. A. 2003. Performance of bifidobacteria in oat-based media. Int. J. Food Microbiol. 83: 105-109. PubMed ID: 12672596.

Nagahama, T., Hamamoto, M., Nakase, T., and Horikoshi, K. 2003. Rhodotorula benthica sp. nov. and Rhodotorula calyptogenae sp. nov., novel yeast species from animals collected from the deep-sea floor, and Rhodotorula lysiniphila sp. nov., which is related phylogenetically. Int. J. Syst. Evol. Microbiol. 53: 897-903. PubMed ID: 12807219.

Itoh, T., Suzuki, K., Sanchez, P. C., and Nakase, T. 2003. Caldisphaera lagunensis gen. nov., sp. nov., a novel thermoacidophilic crenarchaeote isolated from a hot spring at Mt. Maquiling, Philippines. Int. J. Syst. Evol. Microbiol. 53: 1149-1154. PubMed ID: 12892143.

Takashima, M., Sugita, T., Shinoda, T., and Nakase, T. 2003. Three new combinations from the Cryptococcus laurentii complex: Cryptococcus aureus, Cryptococcus carnescens and Cryptococcus peneaus. Int. J. Syst. Evol. Microbiol. 53: 1187-1194. PubMed ID: 12892148.

Matsuyama, H., Yumoto, I., Kudo, T., and Shida, O. 2003. Rhodococcus tukisamuensis sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 53: 1333-1337. PubMed ID: 13130015.

Kurosawa, N., Itoh, Y. H., and Itoh, T. 2003. Reclassification of Sulfolobus hakonensis Takayanagi et al. 1996 as Metallosphaera hakonensis comb. nov. based on phylogenetic evidence and DNA G+C content. Int. J. Syst. Evol. Microbiol. 53: 1607-1608. PubMed ID: 13130056.

Sugita, T., Takashima, M., Kodama, M., Tsuboi, R., and Nishikawa, A. 2003. Description of a new yeast species, Malassezia japonica, and its detection in patients with atopic dermatitis and healthy subjects. J. Clin. Microbiol. 41: 4695-4699. PubMed ID: 14532205.

Nakajima, Y., Ho, C. C., and Kudo, T. 2003. Microtetraspora malaysiensis sp. nov., isolated from Malaysian primary dipterocarp forest soil. J. Gen. Appl. Microbiol. 49: 181-189. PubMed ID: 12949699.

Hamana, K., Tanaka, T., Hosoya, R., Niitsu, M., and Itoh, T. 2003. Cellular polyamines of the acidophilic, thermophilic and thermoacidophilic archaebacteria, Acidilobus, Ferroplasma, Pyrobaculum, Pyrococcus, Staphylothermus, Thermococcus, Thermodiscus and Vulcanisaeta. J. Gen. Appl. Microbiol. 49: 287-293. PubMed ID: 14673752.

Nakase, T., Tsuzuki, S., Lee, F.-L, Sugita, T., Jindamorakot, S., Jan-ngam, H., Potacharoen, W., Tanticharoen, M., Kudo, T., and Takashima, M. 2003. Sporobolomyces magnisporus sp. nov., a new yeast species in the Erythrobasidium cluster isolated from plants in Taiwan. J. Gen. Appl. Microbiol. 49: 337-344. PubMed ID: 14747975.

Sakamoto, M., Takeuchi, Y., Umeda, M., Ishikawa, I., and Benno, Y. 2003. Application of terminal RFLP analysis to characterize oral bacterial flora in saliva of healthy subjects and patients with periodontitis. J. Med. Microbiol. 52: 79-89. PubMed ID: 12488570.

Fungsin, B., Takashima, M., Bai, F.-Y., Artjariyasripong, S., and Nakase, T. 2003. Bullera panici sp. nov. and Bullera siamensis sp. nov., two new yeasts in the Bullera variabilis cluster isolated in Thailand. Microbiol. Cult. Collect. 19: 23-32.

Fungsin, B., Takashima, M., Artjariyasripong, S., Potacharoen, W., and Nakase, T. 2003. Bullera sakaeratica sp. nov., a new species of ballistoconidium-forming yeast found in Thailand. Microbiol. Cult. Collect. 19: 33-39.

Sakamoto, M., Hayashi, H., and Benno, Y. 2003. Terminal restriction fragment length polymorphism analysis for human fecal microbiota and its application for analysis of complex bifidobacterial communities. Microbiol. Immunol. 47: 133-142. PubMed ID: 12680716.

Sugita, T., Takashima, M., Poonwan, N., Mekha, N., Malaithao, K., Thungmuthasawat, B., Prasarn, S., Luangsook, P., and Kudo, T. 2003. The first isolation of ustilaginomycetous anamorphic yeasts, Pseudozyma species, from patients' blood and a description of two new species: P. parantarctica and P. thailandica. Microbiol. Immunol. 47: 183-190. PubMed ID: 12725287.

Hayashi, H., Sakamoto, M., Kitahara, M., and Benno, Y. 2003. Molecular analysis of fecal microbiota in elderly individuals using 16S rDNA library and T-RFLP. Microbiol. Immunol. 47: 557-570. PubMed ID: 14524616.

Itoh, T. 2003. Taxonomy of nonmethanogenic hyperthermophilic and related thermophilic archaea. J. Biosci. Bioeng. 96: 203-212. PubMed ID: 16233511.

Tanaka, T., Hamana, K., and Itoh, T. 2002. Polyamine analysis of extremely halophilic archaebacteria and methanogenic archaebacteris. Ann. Gunma Health Sci. 23: 137-143.

Ueno, R., Urano, N., Suzuki, M., and Kimura, S. 2002. Isolation, characterization, and fermentative pattern of a novel thermotolerant Prototheca zopfii var. hydrocarbonea strain producing ethanol and CO₂ from glucose at 40°C. Arch. Microbiol. 177: 244-250. PubMed ID: 11907680.

Saitoh, S., Noda, S., Aiba, Y., Takagi, A., Sakamoto, M., Benno, Y., and Koga, Y. 2002. Bacteroides ovatus as the predominant commensal intestinal microbe causing a systemic antibody response in inflammatory bowel disease. Clin. Diagn. Lab. Immunol. 9: 54-59. PubMed ID: 11777829.

Matsumoto, M., Tani, H., Ono, H., Ohishi, H., and Benno, Y. 2002. Adhesive property of Bifidobacterium lactis LKM512 and predominant bacteria of intestinal microflora to human intesitnal mucin. Curr. Microbiol. 44: 212-215. PubMed ID: 11821930.

Saito, Y., Hamanaka, Y., Saito, K., Takizawa, S., and Benno, Y. 2002. Stability of species composition of fecal bifidobacteria in human subjects during fermented milk administration. Curr. Microbiol. 44: 368-373. PubMed ID: 11927989.

Hamamoto, M., Nagahama, T., and Tamura, M. 2002. Systematic study of basidiomycetous yeasts - evaluation of the ITS regions of rDNA to delimit species of the genus Rhodosporidium. FEMS Yeast Res. 2: 409-413. PubMed ID: 12702292.

Sakamoto, M., Huang, Y., Umeda, M., Ishikawa, I., and Benno, Y. 2002. Detection of novel oral phylotypes associated with periodontitis. FEMS Microbiol. Lett. 217: 65-69. PubMed ID: 12445647.

Fungsin, B., Hamamoto, M., Arunpairojana, V., Sukhumavasi, J., Atthasampunna, P., and Nakase, T. 2002. Kockovaella barringtoniae sp. nov., a new basidiomycetous yeast species isolated from a plant leaf collected in a tropical rain forest in Thailand. Int. J. Syst. Evol. Microbiol. 52: 281-284. PubMed ID: 11837313.

Sakamoto, M., Suzuki, M., Umeda, M., Ishikawa, I., and Benno, Y. 2002. Reclassification of Bacteroides forsythus (Tanner et al. 1986) as Tannerella forsythensis corrig., gen. nov., comb. nov. Int. J. Syst. Evol. Microbiol. 52: 841-849. PubMed ID: 12054248.

Hamamoto, M., Thanh, V. N., and Nakase, T. 2002. Bannoa hahajimensis gen. nov., sp. nov., and three related anamorphs, Sporobolomyces bischofiae sp. nov., Sporobolomyces ogasawarensis sp. nov. and Sporobolomyces syzygii sp. nov., yeasts isolated from plants in Japan. Int. J. Syst. Evol. Microbiol. 52: 1023-1032. PubMed ID: 12054219.

Itoh, T., Suzuki, K., and Nakase, T. 2002. Vulcanisaeta distributa gen. nov., sp. nov., and Vulcanisaeta souniana sp. nov., novel hyperthermophilic, rod-shaped crenarchaeotes isoltaed from hot springs in Japan. Int. J. Syst. Evol. Microbiol. 52: 1097-1104. PubMed ID: 12148613.

Behrendt, U., Ulrich, A., Schumann, P., Naumann, D., and Suzuki, K. 2002. Diversity of grass-associated Microbacteriaceae isolated from the phyllosphere and litter layer after mulching the sward; polyphasic characterization of Subtercola pratensis sp. nov., Curtobacterium herbarum sp. nov. and Plantibacter flavus gen. nov., sp. nov. Int. J. Syst. Evol. Microbiol. 52: 1441-1454. PubMed ID: 12361245.

Yabuuchi, E., Kosako, Y., Fujiwara, N., Naka, T., Matsunaga, I. Ogura, H., and Kobayashi, K. 2002. Emendation of the genus Sphingomonas Yabuuchi et al. 1990 and junior objective synonymy of the species of three genera, Sphingobium, Novosphingobium and Sphingopyxis, in conjunction with Blastomonas ursincola. Int. J. Syst. Evol. Microbiol. 52: 1485-1496. PubMed ID: 12361250.

Niwata, Y., Takashima, M., Tornai-Lehoczki, J., Deak, T., and Nakase, T. 2002. Udeniomyces pannonicus sp. nov., a ballistoconidium-forming yeast isolated from leaves of plants in Hungary. Int. J. Syst. Evol. Microbiol. 52: 1887-1892. PubMed ID: 12361301.

Sakata, S., Kitahara, M., Sakamoto, M., Hayashi, H., Fukuyama, M., and Benno, Y. 2002. Unification of Bifidobacterium infantis and Bifidobacterium suis as Bifidobacterium longum. Int. J. Syst. Evol. Microbiol. 52: 1945-1951. PubMed ID: 12508852.

Buonaurio, R., Stravato, V. M., Kosako, Y., Fujiwara, N., Naka, T., Kobayashi, K., Cappelli, C., and Yabuuchi, E. 2002. Sphingomonas melonis sp. nov., a novel pathogen that causes brown spots on yellow Spanish melon fruits. Int. J. Syst. Evol. Microbiol. 52: 2081-2087. PubMed ID: 12508872.

Bai, F.-Y., Zhao, J.-H., Takashima, M., Jia, J.-H., Boekhout, T., and Nakase, T. 2002. Reclassification of the Sporobolomyces roseus and Sporidiobolus pararoseus complexes, with the description of Sporobolomyces phaffii sp. nov. Int. J. Syst. Evol. Microbiol. 52: 2309-2314. PubMed ID: 12508902.

He, F., Morita, H., Hashimoto, H., Hosoda, M., Kurisaki, J.-I., Ouwehand, A. C., Isolauri, E., and Benno, Y. 2002. Intestinal Bifidobacterium species induce varying cytokine production. J. Allergy Clin. Immunol. 109: 1035-1036. PubMed ID: 12063538.

Sugita, T., Takashima, M., Shinoda, T., Suto, H., Unno, T., Tsuboi, R., Ogawa, H., and Nishikawa, A. 2002. New yeast species, Malassezia dermatis, isolated from patients with atopic dermatitis. J. Clin. Microbiol. 40: 1363-1367. PubMed ID: 11923357.

Bai, F.-Y., Takashima, M., Jia, J.-H., and Nakase, T. 2002. Dioszegia zsoltii sp. nov., a new ballistoconidium-forming yeast species with two varieties. J. Gen. Appl. Microbiol. 48: 17-23. PubMed ID: 12469312.

Suzuki, M. and Nakase, T. 2002. A phylogenetic study of ubiquinone-7 species of the genus Candida based on 18S ribosomal DNA sequence divergence. J. Gen. Appl. Microbiol. 48: 55-65. PubMed ID: 12469316.

Sugita, T., Takashima, M., Nakase, T., Ichikawa, T., Shinoda, T., and Nishikawa, A. 2002. A basidiomycetous anamorphic yeast, Trichosporon terricola sp. nov., isolated from soil. J. Gen. Appl. Microbiol. 48: 293-297. PubMed ID: 12501440.

Nakase, T., Tsuzuki, S., and Takashima, M. 2002. Bullera taiwanensis sp. nov. and Bullera formosensis sp. nov., two new ballistoconidium-forming yeast species isolated from plant leaves in Taiwan. J. Gen. Appl. Microbiol. 48: 345-355. PubMed ID: 12682873.

Fungsin, B., Takashima, M., Artjariyasripong, S., Arunpairojana, V., Hamamoto, M, and Nakase, T. 2002. Bullera arundinariae sp. nov., a new species of ballistoconidium-forming yeast, isolated from a plant in Thailand. Microbiol. Cult. Collect. 18: 83-90.

Lan, P. T. N., Hayashi, H., Sakamoto, M., and Benno, Y. 2002. Phylogenetic analysis of cecal microbiota in chicken by the use of 16S rDNA clone libraries. Microbiol. Immunol. 46: 371-382. PubMed ID: 12153114.

Nakamura, J., Kubota, Y., Miyaoka, M., Saitoh, T., Mizuno, F., and Benno, Y. 2002. Comparison of four microbial enzymes in clostridia and bacteroides isolated from human feces. Microbiol. Immunol. 46: 487-490. PubMed ID: 12222935.

Hayashi, H., Sakamoto, M., and Benno, Y. 2002. Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods. Microbiol. Immunol. 46: 535-548. PubMed ID: 12597356.

Hayashi, H., Sakamoto, M., and Benno, Y. 2002. Fecal microbial diversity in a strict vegetarian as determined by molecular analysis and cultivation. Microbiol. Immunol. 46: 819-831. PubMed ID: 12363017.

Park, J.-Y., Okada, G., Takahashi, M., and Oyaizu, H. 2002. Screening of fungal antagonists against yellows of cabbage caused by Fusarium oxysporum f. sp. conglutinans. Mycoscience 43: 447-451.

Morishita, Y., Oowada, T., Ozaki, A., and Mizutani, T. 2002. Galactooligosaccharide in combination with Bifidobacterium and Bacteroides affects the population of Clostridium perfringens in the intestine of gnotobiotic mice. Nutr. Res. 22: 1333-1341.

He, F., Isolauri, E., Morita, H., Hosoda, M., Hashimoto, H., Fuse, T., Mizumachi, K., Kurisaki, J. Benno, Y., and Salminen, S. 2002. Bifidobacteria isolated from aTherallergic and healthy infants: differences in taxonomy, mucus adhesion and immune modulatory effects. Microecol. Ther. 29: 103-108.

Benno, Y. 2002. Bifidobacteria dairy products-market opportunities in Japan. Nutr. Health 375: 20-21.

Belloch, C., Hamamoto, M., Eliskases-Lechner, F., and Prillinger, H. 2002. Kluyveromyces spp, In: Roginsky, H., Fuquay, J. W., and Fox, P. F. (eds.), Encyclopedia of Dairy Sciences, pp. 1417-1428, Academic Press., London.

Sorimachi, K., Itoh, T., Kawarabayashi, Y., Okayasu, T., Akimoto, K., and Niwa, A. 2001. Conservation of the basic pattern of cellular amino acid composition of archaeobacteria during biological evolution and the putative amino acid composition of primitive life forms. Amino Acids 21: 393-399. PubMed ID: 11858698.

Matsui, H., Ogata, K., Tajima, K., Nagamine, T., Nakamura, M., Aminov, R. I., and Benno, Y. 2001. Cloning, expression, and characterization of a cellulase gene from Prevotella ruminicola. Anim. Sci. J. 72: 421-426.

Takashima, M. and Nakase, T. 2001. Tilletiopsis derxii, Tilletiopsis oryzicola and Tilletiopsis penniseti, three new species of the ustilagionomycetous anamorphic genus Tilletiopsis isolated from leaves in Thailand. Antonie van Leeuwenhoek 80: 43-56. PubMed ID: 11761366.

Nagahama, T., Hamamoto, M., Nakase, T., Takami, H., and Horikoshi, K. 2001. Distribution and identification of red yeasts in deep-sea environments around the northwest Pacific Ocean. Antonie van Leeuwenhoek 80: 101-110. PubMed ID: 11759043.

Nagahama, T., Hamamoto, M., Nakase, T., and Horikoshi, K. 2001. Rhodotorula lamellibrachii sp. nov., a new yeast species from a tubeworm collected at the deep-sea floor in Sagami Bay and its phylogenetic analysis. Antonie van Leeuwenhoek 80: 317-323. PubMed ID: 11827218.

Tajima, K., Aminov, R. I., Nagamine, T., Matsui, H., Nakamura, M., and Benno, Y. 2001. Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR. Appl. Environ. Microbiol. 67: 2766-2774. PubMed ID: 11375193.

He, F., Ouwehand, A. C., Isolauri, E., Hosoda, M., Benno, Y., and Salminen, S. 2001. Differences in composition and mucosal adhesion of bifidobacteria isolated from healthy adults and healthy seniors. Curr. Microbiol. 43: 351-354. PubMed ID: 11688800.

Itoh, Y. H., Kurosawa, N., Uda, I., Sugai, A., Tanoue, S., Itoh, T., Horiuchi, T., and Itoh, T. 2001. Metallosphaera sedula TA-2, a calditoglycerocaldarchaeol deletion strain of a thermoacidophilic archaeon. Extremophiles 5: 241-245. PubMed ID: 11523893.

He, F., Ouwehand, A. C., Isolauri, E., Hashimoto, H., Benno, Y., and Salminen, S. 2001. Comparison of mucosal adhesion and species identification of bifidobacteria isolated from healthy and allergic infants. FEMS Immunol. Med. Microbiol. 30: 43-47. PubMed ID: 11172990.

Matsumoto, M., Ohishi, H., and Benno, Y. 2001. Impact of LKM512 yogurt on improvement of intestinal environment of the elderly. FEMS Immunol. Med. Microbiol. 31: 181-186. PubMed ID: 11720813.

Bai, F.-Y., Takashima, M., and Nakase, T. 2001. Description of Bullera kunmingenis sp. nov., and clarification of the taxonomic status of Bullera sinensis and its synonyms based on molecular phylogenetic analysis. FEMS Yeast Res. 1: 103-109. PubMed ID: 12702355.

Kitahara, M., Takamine, F., Imamura, T., and Benno, Y. 2001. Clostridium hiranonis sp. nov., a human intestinal bacterium with bile acid 7α-dehydroxylating activity. Int. J. Syst. Evol. Microbiol. 51: 39-44. PubMed ID: 11211270.

Bai, F.-Y., Takashima, M., Hamamoto, M., and Nakase, T. 2001. Sporobolomyces yunnanensis sp. nov., a Q-10(H₂)-containing yeast species with a close phylogenetic relationship to Erythrobasidium hasegawianum. Int. J. Syst. Evol. Microbiol. 51: 231-235. PubMed ID: 11211263.

Yabuuchi, E., Yamamoto, H., Terakubo, S., Okamura, N., Naka, T., Fujiwara, N., Kobayashi, K., Kosako, Y., and Hiraishi, A. 2001. Proposal of Sphingomonas wittichii sp. nov. for strain RW1^T, known as a dibenzo-p-dioxin metabolizer. Int. J. Syst. Evol. Microbiol. 51: 281-292. PubMed ID: 11321072.

Zhang, Z., Kudo, T., Nakajima, Y., and Wang, Y. 2001. Clarification of the relationship between the members of the family Thermomonosporaceae on the basis of 16S rDNA, 16S-23S rRNA internal transcribed spacer and 23S rDNA sequences and chemotaxonomic analyses. Int. J. Syst. Evol. Microbiol. 51: 373-383. PubMed ID: 11321082.

Fungsin, B., Hamamoto, M., Arunpairojana, V., Sukhumavasi, J., Atthasampunna, P., and Nakase, T. 2001. Bensingtonia thailandica sp. nov., a novel basidiomycetous yeast species isolated from plant leaves in Thailand. Int. J. Syst. Evol. Microbiol. 51: 1209-1213. PubMed ID: 11411689.

Sugita, T., Takashima, M., Nakase, T., Ichikawa, T., Ikeda, R., and Shinoda, T. 2001. Two new yeasts, Trichosporon debeurmannianum sp. nov. and Trichosporon dermatis sp. nov., transferred from the Cryptococcus humicola complex. Int. J. Syst. Evol. Microbiol. 51: 1221-1228. PubMed ID: 11411691.

Xin, H., Itoh, T., Zhou, P., Suzuki, K.-I., and Nakase, T. 2001. Natronobacterium nitratireducens sp. nov., a haloalkaliphilic archaeon isolated from a soda lake in China. Int. J. Syst. Evol. Microbiol. 51: 1825-1829. PubMed ID: 11594615.

Euzéby, J. P. and Kudo, T. 2001. Corrigenda to the Validation Lists. Int. J. Syst. Evol. Microbiol. 51: 1933-1938. PubMed ID: 11594628.

Bai, F.-Y., Takashima, M., and Nakase, T. 2001. Phylogenetic analysis of strains originally assigned to Bullera variabilis: descriptions of Bullera pseudohuiaensis sp. nov., Bullera komagatae sp. nov. and Bullera pseudoschimicola sp. nov. Int. J. Syst. Evol. Microbiol. 51: 2177-2187. PubMed ID: 11760961.

Takashima, M., Sugita, T., Shinoda, T., and Nakase, T. 2001. Reclassification of the Cryptococcus humicola complex. Int. J. Syst. Evol. Microbiol. 51: 2199-2210. PubMed ID: 11760963.

Ouwehand, A. C., Isolauri, E., He, F., Hashimoto, H., Benno, Y., and Salminen, S. 2001. Differences in Bifidobacterium flora composition in allergic and healthy infants. J. Allergy Clin. Immunol. 108: 144-145. PubMed ID: 11447399.

Honda, Y., Ueki, M., Okada, G., Onose, R., Usami, R., Horikoshi, K., and Osada, H. 2001. Isolation, and biological properties of a new cell cycle inhibitor, curvularol, isolated from Curvularia sp. RK97-F166. J. Antibiot. 54: 10-16. PubMed ID: 11269706.

Muroi, M., Sano, K., Okada, G., Koshino, H., Oku, T., and Takatsuki, A. 2001. F13459, a new derivative of mycophenolic acid. I. Taxonomy, isolation, and biological properties. J. Antibiot. 54: 489-493. PubMed ID: 11513037.

Kakeya, H., Kageyama, S.-I., Nie, L., Onose, R., Okada, G., Beppu, T., Norbury, C. J., and Osada, H. 2001. Lucilactaene, a new cell cycle inhibitor in p53-transfected cancer cells, produced by a Fusarium sp. J. Antibiot. 54: 850-854. PubMed ID: 11776444.

Sugita, T., Ichikawa, T., Matsukura, M., Sueda, M., Takashima, M., Ikeda, R., Nishikawa, A., and Shinoda, T. 2001. Genetic diversity and biochemical characteristics of Trichosporon asahii isolated from clinical specimens, houses of patients with summer-type-hypersensitivity pneumonitis, and environmental materials. J. Clin. Microbiol. 39: 2405-2411. PubMed ID: 11427546.

Luong, T. D., Takashima, M., Ty, V. P., Dung, L. N., and Nakase, T. 2001. Four new species of Kockovaella isolated from plant leaves collected in Vietnam. J. Gen. Appl. Microbiol. 46: 297-310. PubMed ID: 12483571.

Takashima, M., Deak, T., and Nakase, T. 2001. Emendation of Dioszegia with redescription of Dioszegia hungarica and two new combinations, Dioszegia aurantiaca and Dioszegia crocea. J. Gen. Appl. Microbiol. 47: 75-84. PubMed ID: 12483559.

Takeuchi, Y., Umeda, M., Sakamoto, M., Benno, Y., Huang, Y., and Ishikawa, I. 2001. Treponema socranskii, Treponema denticola, and Porphyromonas gingivalis are associated with severity of periodontal tissue destruction. J. Periodontol. 72: 1354-1363. PubMed ID: 11699477.

Nakase, T., Takashima, M., Itoh, M., Fungsin, B., Potacharoen, W., Atthasampunna, P., and Komagata, K. 2001. Ballistoconidium-forming yeasts found in the phyllosphere of Thailand. Microbiol. Cult. Collect. 17: 23-33.

Sakamoto, M., Takeuchi, Y., Umeda, M., Ishikawa, I., and Benno, Y. 2001. Rapid detection and quantification of five periodontopathic bacteria by real-time PCR. Microbiol. Immunol. 45: 39-44. PubMed ID: 11270605.

He, F., Ouwehand, A. C., Hashimoto, H., Isolauri, E., Benno, Y., and Salminen, S. 2001. Adhesion of Bifidobacterium spp. to human intestinal mucus. Microbiol. Immunol. 45: 259-262. PubMed ID: 11345536.

Kitahara, M., Sakamoto, M., and Benno, Y. 2001. PCR detection method of Clostridium scindens and C. hiranonis in human fecal samples. Microbiol. Immunol. 45: 263-266. PubMed ID: 11345537.

Ryu, C. S., Czajka, J. W., Sakamoto, M., and Benno, Y. 2001. Characterization of the Lactobacillus casei group and the Lactobacillus acidophilus group by automated ribotyping. Microbiol. Immunol. 45: 271-275. PubMed ID: 11386416.

Sugita, T., Takashima, M., Ikeda, R., Nakase, T., and Shinoda, T. 2001. Intraspecies diversity of Cryptococcus albidus isolated from humans as revealed by sequences of the internal transcribed spacer regions. Microbiol. Immunol. 45: 291-297. PubMed ID: 11386419.

Kageyama, A. and Benno, Y. 2001. Rapid detection of human fecal Eubacterium species and related genera by nested PCR method. Microbiol. Immunol. 45: 315-318. PubMed ID: 11386422.

Hamana, K. and Itoh, T. 2001. Polyamines of the hyperthermophilic archaebacteria belonging to the genera Thermococcus and Methanothermus and two new genera Caldivirga and Palaeococcus. Microbios 104: 105-114. PubMed ID: 11297011.

Hamana, K., Niitsu, M., Samejima, K., and Itoh, T. 2001. Polyamines of the thermophilic eubacteria belonging to the genera Thermosipho, Thermaerobacter and Caldicellulosiruptor. Microbios 104: 177-185. PubMed ID: 11327112.

Tanaka, K., Plattner, R. D., Yamagishi, R., Minamisawa, M., Manabe, M., Kawasugi, S., Gareis, M., and Okada, G. 2001. 8-Deoxy-trichothecin production by Spicellum roseum isolated from a cultivated mushroom in Japan. Mycotoxins 51: 71-77.

Itoh, T., Suzuki, K.-I., Sanchez, P. C., and Nakase, T. 2001. Genus II. Caldivirga Itoh, Suzuki, Sanchez and Nakase 1999, 1162^VP, In: Boone, D. R. and Castenholz, R. W. (eds.), Bergey's Manual of Systematic Bacteriology, 2nd ed., Vol. 1, The Archaea and the Deeply Branching and Phototrophic Bacteria, pp. 173-174, Springer, New York.

Suzuki, K.-I., Tapay, L. M., and Rahayu, E. S. 2001. Culture collection networks in Asia: a role of Asian network on microbial researches (ANMR) project, In: Nga, B. H., Tan, H. M., and Suzuki, K.-I. (eds.), Microbial Diversity in Asia. Technology and Prospects, pp. 71-89, World Scientific Publishing, Singapore.

Ho, C. C., Tan, G. Y. A., Seow, I., Ajam, N., Tan, E. L., Goodfellow, M., Ward, A. C., Brown, R., Wong, N. K., Lo, C. W., Cheah, H. Y., Lai, N. S., and Suzuki, K.-I. 2001. Isolation, characterisation and biological activities of actinomycetes isolated from dipterocarp rain forest soils in Malaysia, In: Nga, B. H., Tan, H. M., and Suzuki, K.-I. (eds.), Microbial Diversity in Asia. Technology and Prospects, pp. 209-228, World Scientific Publishing, Singapore.

Sugita, T., Ikeda, R., Takashima, M., Nakase, T., Nishikawa, A., and Shinoda, T. 2001. Genetic diversity of the opportunistic yeast pathogen, Cryptococcus species, In: Michael Benedik (ed.), Res. Adv. in Microbiol, pp. 27-46, Global Research Network, Kerala.

Tajima, K., Arai, S., Ogata, K., Nagamine, T., Matsui, H., Nakamura, M., Aminov, R. I., and Benno, Y. 2000. Rumen bacterial community transition during adaptation to high-grain diet. Anaerobe 6: 273-284.

Matsumoto, A., Takahashi, Y., Kudo, T., Seino, A., Iwai, Y., and Omura, S. 2000. Actinoplanes capillaceus sp. nov., a new species of the genus Actinoplanes. Antonie van Leeuwenhoek 78: 107-115. PubMed ID: 11204762.

Nakamura, M., Ogata, K., Nagamine, T., Tajima, K., Matsui, H., and Benno, Y. 2000. Characterization of the cryptic plasmid pSBO2 isolated from Streptococcus bovis JB1 and construction of a new shuttle vector. Curr. Microbiol. 41: 27-32. PubMed ID: 10919395.

Matsui, H., Ogata, K., Tajima, K., Nakamura, M., Nagamine, T., and Benno, Y. 2000. Phenotypic characterization of polysaccharidases produced by four Prevotella type strains. Curr. Microbiol. 41: 45-49. PubMed ID: 10919398.

Inoue, K., Sugiyama, K., Kosako, Y., Sakazaki, R., and Yami, S. 2000. Enterobacter cowanii sp. nov., a new species of the family Enterobacteriaceae. Curr. Microbiol. 41: 417-420. PubMed ID: 11080391.

Furumoto, H., Taguchi, A., Itoh, T., Morinaga, T., and Itoh, T. 2000. 5S rRNA binding proteins from the hyperthermophilic archaeon, Pyrococcus furiosus. FEBS Lett. 486: 195-199. PubMed ID: 11119702.

Kageyama, A., Sakamoto, M., and Benno, Y. 2000. Rapid identification and quantification of Collinsella aerofaciens using PCR. FEMS Microbiol. Lett. 183: 43-47. PubMed ID: 10650200.

Hamamoto, M., Tamura, M., and Nakase, T. 2000. Emended descriptions of Tilletiopsis washingtonensis, Tilletiopsis cremea and Tilletiopsis lilacina. Int. J. Syst. Evol. Microbiol. 50: 925-930. PubMed ID: 10758905.

Kitahara, M., Takamine, F., Imamura, T., and Benno, Y. 2000. Assignment of Eubacterium sp. VPI 12708 and related strains with high bile acid 7α-dehydroxylating activity to Clostridium scindens and proposal of Clostridium hylemonae sp. nov., isolated from human faeces. Int. J. Syst. Evol. Microbiol. 50: 971-978. PubMed ID: 10843034.

Xin, H., Itoh, T., Zhou, P., Suzuki, K., Kamekura, M., and Nakase, T. 2000. Natrinema versiforme sp. nov., an extremely halophilic archaeon from Aibi salt lake, Xinjiang, China. Int. J. Syst. Evol. Microbiol. 50: 1297-1303. PubMed ID: 10843075.

Hamamoto, M. and Nakase, T. 2000. Phylogenetic analysis of the ballistoconidium-forming yeast genus Sporobolomyces based on 18S rDNA sequences. Int. J. Syst. Evol. Microbiol. 50: 1373-1380. PubMed ID: 10843083.

Uchino, M., Kosako, Y., Uchimura, T., and Komagata, K. 2000. Emendation of Pseudomonas straminea Iizuka and Komagata 1963. Int. J. Syst. Evol. Microbiol. 50: 1513-1619. PubMed ID: 10939658.

Kageyama, A. and Benno, Y. 2000. Catenibacterium mitsuokai gen. nov., sp. nov., a Gram-positive anaerobic bacterium isolated from human faeces. Int. J. Syst. Evol. Microbiol. 50: 1595-1599. PubMed ID: 10939666.

Kageyama, A. and Benno, Y. 2000. Emendation of genus Collinsella and proposal of Collinsella stercoris sp. nov. and Collinsella intestinalis sp. nov. Int. J. Syst. Evol. Microbiol. 50: 1767-1774. PubMed ID: 11034485.

Sugita, T., Takashima, M., Ikeda, R., Nakase, T., and Shinoda, T. 2000. Intraspecies diversity of Cryptococcus laurentii as revealed by sequences of internal transcribed spacer regions and 28S rRNA gene and the taxonomic position of C. laurentii clinical isolates. J. Clin. Microbiol. 38: 1468-1471. PubMed ID: 10747127.

Nakase, T. 2000. Expanding world of ballistosporous yeasts: distribution in the phyllosphere, systematics and phylogeny. J. Gen. Appl. Microbiol. 46: 189-216. PubMed ID: 12483579.

Matsumoto, M., Tadenuma, T., Nakamura, K., Kume, H., Imai, T., Kihara, R., Watanabe, M., and Benno, Y. 2000. Effect of Bifidobacterium lactis LKM 512 yogurt on fecal microflora in middle to old aged persons. Microb. Ecol. Health Dis. 12: 77-80.

Hasegawa, H. and Benno, Y. 2000. Anticarcinogenesis in mice by ginseng-hydrolyzing colonic bacteria. Microb. Ecol. Health Dis. 12: 85-91.

Kageyama, A. and Benno, Y. 2000. Coprobacillus catenaformis gen. nov., sp. nov., a new genus and species isolated from human feces. Microbiol. Immunol. 44: 23-28. PubMed ID: 10711596.

Kageyama, A. and Benno, Y. 2000. Phylogenic and phenotypic characterization of some Eubacterium-like isolates from human feces: description of Solobacterium moorei gen. nov., sp. nov. Microbiol. Immunol. 44: 223-227. PubMed ID: 10832964.

Sugita, T., Takashima, M., Ikeda, R., Nakase, T., and Shinoda, T. 2000. Phylogenetic and taxonomic heterogeneity of Cryptococcus humicolus by analysis of the sequences of the internal transcribed spacer regions and 18S rDNA, and the phylogenetic relationships of C. humicolus, C. curvatus, and the genus Trichosporon. Microbiol. Immunol. 44: 455-461. PubMed ID: 10941928.

Kosako, Y., Yabuuchi, E., Naka, T., Fujiwara, N., and Kobayashi, K. 2000. Proposal of Sphingomonadaceae fam. nov., consisting of Sphingomonas Yabuuchi et al. 1990, Erythrobacter Shiba and Shimidu 1982, Erythromicrobium Yurkov et al. 1994, Porphyrobacter Fuerst et al. 1993, Zymomonas Kluyver and van Niel 1936, and Sandaracinobacter Yurkov et al. 1997, with the type genus Sphingomonas Yabuuchi et al. 1990. Microbiol. Immunol. 44: 563-575. PubMed ID: 10981829.

Sakamoto, M., Umeda, M., Ishikawa, I., and Benno, Y. 2000. Comparison of the oral bacterial flora in saliva from a healthy subject and two periodontitis patients by sequence analysis of 16S rDNA libraries. Microbiol. Immunol. 44: 643-652. PubMed ID: 11021394.

Cai, Y., Matsumoto, M., and Benno, Y. 2000. Bifidobacterium lactis Meile et al. 1997 is a subjective synonym of Bifidobacterium animalis (Mitsuoka 1969) Scardovi and Trovatelli 1974. Microbiol. Immunol. 44: 815-820. PubMed ID: 11128064.

Takashima, M. and Nakase, T. 2000. Four new species of the genus Sporobolomyces isolated from leaves in Thailand. Mycoscience 41: 357-369.

Okada, G., Jacobs, K., Kirisits, T., Louis-Seize, G. W., Seifert, K. A., Sugita, T., Takematsu, A., and Wingfield, M. J. 2000. Epitypification of Graphium penicillioides Corda, with comments on the phylogeny and taxonomy of graphium-like synnematous fungi. Stud. Mycol. 45: 169-188.

Takashima, M., Hamamoto, M., and Nakase, T. 2000. Taxonomic significance of fucose in the class Urediniomycetes: distribution of fucose in cell wall and phylogeny of urediniomycetous yeasts. Syst. Appl. Microbiol. 23: 63-70. PubMed ID: 10879980.

Hamamoto, M. and Nakase, T. 2000. Phylogenetic relationships among fungi inferred from small subunit ribosomal RNA gene sequences, In: Priest, F. G. and Goodfellow, M. (eds.), Applied Microbial Systematics, pp. 57-71, Kluwer Academic Publishers, Dordrecht.

Cai, Y., Kumai, S., Zhang, J., and Benno, Y. 1999. Comparative studies of lactobacilli and enterococci associated with forage crops as silage inoculants. Anim. Sci. J. 70: 188-194.

Ogawara, H., Kawamura, N., Kudo, T., Suzuki, K., and Nakase, T. 1999. Distribution of β-lactamases in actinomycetes. Antimicrob. Agents Chemother. 43: 3014-3017. PubMed ID: 10582901.

Cai, Y., Kumai, S., Ogawa, M., Benno, Y., and Nakase, T. 1999. Characterization and identification of Pediococcus species isolated from forage crops and their application for silage preparation. Appl. Environ. Microbiol. 65: 2901-2906. PubMed ID: 10388681.

Nakamura, M., Nagamine, T., Ogata, K., Tajima, K., Matsui, H., Aminov, R. I., and Benno, Y. 1999. Sequence analysis of small cryptic plasmids isolated from Selenomonas ruminantium S20. Curr. Microbiol. 38: 107-112. PubMed ID: 9871109.

Tajima, K., Aminov, R. I., Nagamine, T., Ogata, K., Nakamura, M., Matsui, H., and Benno, Y. 1999. Rumen bacterial diversity as determined by sequence analysis of 16S rDNA libraries. FEMS Microbiol. Ecol. 29: 159-169.

Ogata, K., Sekizaki, T., Aminov, R. I., Tajima, K., Nakamura, M., Nagamine, T., Matsui, H., and Benno, Y. 1999. A small cryptic plasmid from Ruminobacter amylophilus NIAH-3 possesses functional mobilization properties. FEMS Microbiol. Lett. 181: 41-48. PubMed ID: 10564787.

Kageyama, A., Benno, Y., and Nakase, T. 1999. Phylogenetic and phenotypic evidence of Eubacterium aerofaciens to the genus Collinsella as Collinsella aerofaciens gen. nov., comb. nov. Int. J. Syst. Bacteriol. 49: 557-565. PubMed ID: 10319476.

Yoon, J.-H., Cho, Y.-G, Lee, S. T., Suzuki, K., Nakase, T., and Park, Y.-H. 1999. Nocardioides nitrophenolicus sp. nov., a p-nitrophenol-degrading bacterium. Int. J. Syst. Bacteriol. 49: 675-680. PubMed ID: 10319490.

Park, Y.-H., Yoon, J.-H., Shin, Y. K., Suzuki, K., Kudo, T., Seino, A., Kim, H.-J., Lee, J.-S., and Lee, S. T. 1999. Classification of 'Nocardioides fulvus' IFO 14399 and Nocardioides sp. ATCC 39419 in Kribbella gen. nov., as Kribbella flavida sp. nov. and Kribbella sandramycini sp. nov. Int. J. Syst. Bacteriol. 49: 743-752. PubMed ID: 10319498.

Itoh, T., Suzuki, K., Sanchez, P. C., and Nakase, T. 1999. Caldivirga maquilingensis gen. nov., sp. nov., a new genus of rod-shaped crenarchaeote isolated from a hot spring in the Philippines. Int. J. Syst. Bacteriol. 49: 1157-1163. PubMed ID: 10425774.

Cai, Y., Okada, H., Mori, H., Benno, Y., and Nakase, T. 1999. Lactobacillus paralimentarius sp. nov., isolated from sourdough. Int. J. Syst. Bacteriol. 49: 1451-1455. PubMed ID: 10555326.

Kageyama, A., Benno, Y., and Nakase, T. 1999. Phylogenetic evidence for the transfer of Eubacterium lentum to the genus Eggerthella as Eggerthella lenta gen. nov., comb. nov. Int. J. Syst. Bacteriol. 49: 1725-1732. PubMed ID: 10555354.

Nakajima, Y., Kitpreechavanich, V., Suzuki, K., and Kudo, T. 1999. Microbispora corallina sp. nov., a new species of the genus Microbispora isolated from Thai soil. Int. J. Syst. Bacteriol. 49: 1761-1767. PubMed ID: 10555358.

Kudo, T., Nakajima, Y., and Suzuki, K. 1999. Catenuloplanes crispus (Petrolini et al. 1993) comb. nov.: incorporation of the genus Planopolyspora Petrolini 1993 into the genus Catenuloplanes Yokota et al. 1993 with an amended description of the genus Catenuloplanes. Int. J. Syst. Bacteriol. 49: 1853-1860. PubMed ID: 10555369.

Nagahama, T., Hamamoto, M., Nakase, T., and Horikoshi, K. 1999. Kluyveromyces nonfermentans sp. nov., a new yeast species isolated from the deep sea. Int. J. Syst. Bacteriol. 49: 1899-1905. PubMed ID: 10555374.

Ueda, K., Seki, T., Kudo, T., Yoshida, T., and Kataoka, M. 1999. Two distinct mechanisms cause heterogeneity of 16S rRNA. J. Bacteriol. 181: 78-82. PubMed ID: 9864315.

Ogata, K., Aminov, R. I., Tajima, K., Nakamura, M., Matsui, H., Nagamine, T., and Benno, Y. 1999. Construction of Prevotella ruminicola-Escherichia coli shuttle vector pRAM45 and transformation of P. ruminicola strains by electroporation. J. Biosci. Bioeng. 88: 316-318. PubMed ID: 16232618.

Cai, Y., Benno, Y., Ogawa, M., and Kumai, S. 1999. Effect of applying lactic acid bacteria isolated from forage crops on fermentation characteristics and aerobic deterioration of silage. J. Dairy Sci. 82: 520-526. PubMed ID: 10194670.

Uchida, K., Kudo, T., Suzuki, K., and Nakase, T. 1999. A new rapid method of glycolate test by diethyl ether extraction, which is applicable to a small amount of bacterial cells of less than one milligram. J. Gen. Appl. Microbiol. 45: 49-56. PubMed ID: 12501387.

Tamura, M., Hamamoto, M., Cañete-Gibas, C. F, Sugiyama, J., and Nakase, T. 1999. Genetic relatedness among species in Aspergillus section Clavati as measured by electrophoretic comparison of enzymes, DNA base composition, and DNA-DNA hybridization. J. Gen. Appl. Microbiol. 45: 77-83. PubMed ID: 12501391.

Cai, Y., Suyanandana, P., Saman, P., and Benno, Y. 1999. Classification and characterization of lactic acid bacteria isolated from the intestines of common carp and freshwater prawns. J. Gen. Appl. Microbiol. 45: 177-184. PubMed ID: 12501375.

Sugita, T. and Nakase, T. 1999. Nonuniversal usage of the leucine CUG codon in yeasts: investigation of basidiomycetous yeast. J. Gen. Appl. Microbiol. 45: 193-197. PubMed ID: 12501377.

Suzuki, M., Suh, S, -O., Sugita, T., and Nakase, T. 1999. A phylogenetic study on galactose-containing Candida species based on 18S ribosomal DNA sequences. J. Gen. Appl. Microbiol. 45: 229-238. PubMed ID: 12501365.

Suzuki, M. and Nakase, T. 1999. A phylogenetic study of ubiquinone Q-8 species of the genera Candida, Pichia, and Citeromyces based on 18S ribosomal DNA sequence divergence. J. Gen. Appl. Microbiol. 45: 239-246. PubMed ID: 12501366.

Suzuki, K., Suzuki, M., Sasaki, J., Park, Y.-H., and Komagata, K. 1999. Leifsonia gen. nov., a genus for 2,4-diaminobutyric acid-containing actinomycetes to accommodate "Corynebacterium aquaticum" Leifson 1962 and Clavibacter xyli subsp. cynodontis Davis et al. 1984. J. Gen. Appl. Microbiol. 45: 253-262. PubMed ID: 12501368.

Kageyama, A., Zama, M., Sugama, S., Yamasato, K., and Benno, Y. 1999. Assignment of the six solvent-producing Clostridium spp. to Clostridium beijerinckii based on DNA-DNA reassociation. J. Gen. Appl. Microbiol. 45: 263-267. PubMed ID: 12501369.

Isogai, H., Kosako, Y., Benno, Y., and Isogai, E. 1999. Ecology of genus Porphyromonas in canine periodontal disease. Zentralbl. Veterinarmed. B 46: 467-473. PubMed ID: 10528543.

Sugita, T., Kagaya, K., Takashima, M., Suzuki, M., Fukazawa, Y., and Nakase, T. 1999. A clinical isolate of Candida palmioleophila formerly identified as Torulopsis candida. Nippon Ishinkin Gakkai Zasshi (Jpn. J. Med. Mycol.) 40: 21-25. PubMed ID: 9929578.

Takashima, M. and Nakase, T. 1999. Molecular phylogeny of the genus Cryptococcus and related species based on the sequences of 18S rDNA and internal transcribed spacer regions. Microbiol. Cult. Collect. 15: 35-47.

Mikata, K., Ueda-Nishimura, K., Goto, S., Kurtzman, C. P., Suzuki, M., Yarrow, D., and Nakase, T. 1999. Reidentification of yeast strains deposited as Candida agrestis, with a description of Candida kofuensis sp. nov. Microbiol. Cult. Collect. 15: 49-57.

Yabuuchi, E., Kosako, Y., Naka, T., Suzuki, S., and Yano, I. 1999. Proposal of Sphingomonas suberifaciens (van Bruggen, Jochimsen and Brown 1990) comb. nov., Sphingomonas natatoria (Sly 1985) comb. nov., Sphingomonas ursincola (Yurkov et al. 1997) comb. nov., and emendation of the genus Sphingomonas. Microbiol. Immunol. 43: 339-349. PubMed ID: 10385200.

Kageyama, A., Benno, Y., and Nakase, T. 1999. Phylogenic and phenotypic evidence for the transfer of Eubacterium fossor to the genus Atopobium as Atopobium fossor comb. nov. Microbiol. Immunol. 43: 389-395. PubMed ID: 10449244.

Sakamoto, M., Takeuchi, Y., Umeda, M., Ishikawa, I., Benno, Y., and Nakase, T. 1999. Detection of Treponema socranskii associated with human periodontitis by PCR. Microbiol. Immunol. 43: 485-490. PubMed ID: 10449255.

Sakamoto, M., Koseki, T., Umeda, M., Ishikawa, I., Benno, Y., and Nakase, T. 1999. Phylogenetic analysis of saccharolytic oral treponemes isolated from human subgingival plaque. Microbiol. Immunol. 43: 711-716. PubMed ID: 10529113.

Hamana, K., Hamana, H., Shinozawa, T., Niitsu, M., Samejima, K., and Itoh, T. 1999. Polyamines of the thermophilic eubacteria belonging to the genera Aquifex, Thermodesulfobacterium, Thermus and Meiothermus, and the thermophilic archaebacteria belonging to the genera Sulfurisphaera, Sulfophobococcus, Stetteria, Thermocladium, Pyrococcus, Thermococcus, Methanopyrus and Methanothermus. Microbios 97: 117-130.

Nakase, T., Suzuki, M., Sugita, T., Suh, S.-O., and Komagata, K. 1999. Three new species of anamorphic yeasts phenotypically and phylogenetically related to Candida mesenterica: the description of Candida fungicola sp. nov., Candida sagamina sp. nov., and Candida fukazawae sp. nov. isolated from fruit bodies of mushrooms. Mycoscience 40: 465-476.

Sugita, T., Cañete-Gibas, C. F., Takashima, M., and Nakase, T. 1999. Three new species of Bullera isolated from leaves in the Ogasawara Islands. Mycoscience 40: 491-501.

Bai, F.-Y., Takashima, M., and Nakase, T. 1999. Molecular phylogenetic studies on the Bensingtonia strain isolated from Yunnan, China. Mycosystema 18: 254-258.

Hoshino, T., Tojo, M., Okada, G., Kanda, H., Ohgiya, S., and Ishizaki, K. 1999. A filamentous fungus, Pythium ultimum Trow var. ultimum, isolated from moribund moss colonies from Svalbard, northern islands of Norway. Polar Biosci. 12: 68-75.

Sugita, T. and Nakase, T. 1999. Non-universal usage of the leucine CUG codon and the molecular phylogeny of the genus Candida. Syst. Appl. Microbiol. 22: 79-86. PubMed ID: 10188281.

Benno, Y. 1999. Probiotic lactic acid bacteria for functional food. Bioind. News 12: 7-10.

Arie, T., Kobayashi, Y., Kono, Y., Okada, G., and Yamaguchi, I. 1999. Control of clubroot of crucifers by Phoma glomerata and its product epoxydon. Pestic Sci. 55: 602-604.

Salminen, S., Quwehand, A., Benno, Y., and Lee, Y. K. 1999. Probiotics: how should they be defined? Trends Food Sci. Technol. 10: 107-110.

Benno, Y. 1999. The concept of functional foods, In: International Dairy Foundation (ed.), Milk and Health, pp. 114-119, International Dairy Books, Denmark.

Bai, F.-Y., Takashima, M., and Nakase, T. 1999. The discovery of new ballistoconidia-forming yeast taxa from Yunnan, China, and its implication in yeast species diversity, In: Proceedings of the Second International Symposium on the Geoenvironmental Changes and Biodiversity in Northeast Asia, pp. 66-68, Tongji University, Shanghai.

Hamana, K., Hamana, H., and Itoh, T. 1998. Polyamine analysis of extremely halophilic archaebacteria. Ann. Gunma Health Sci. 19: 1-4.

Nishihara, H., Yaguchi, T., Chung, S. Y., Suzuki, K., Yanagi, M., Yamasato, K., Kodama, T., and Igarashi, Y. 1998. Phylogenetic position of an obligately chemoautotrophic, marine hydrogen-oxidizing bacterium, Hydrogenovibrio marinus, on the basis of 16S rRNA gene sequences and two form I RuBisCO gene sequences. Arch. Microbiol. 169: 364-368. PubMed ID: 9531639.

Itoh, T., Suzuki, K., and Nakase, T. 1998. Occurrence of introns in the 16S rRNA genes of members of the genus Thermoproteus. Arch. Microbiol. 170: 155-161. PubMed ID: 9683654.

Tomita, S., Shirasaki, N., Hayashizaki, H., Matsuyama, J., Benno, Y., and Kiyosawa, I. 1998. Binding characteristics of bovine lactoferrin to the cell surface of Clostridium species and identification of the lactoferrin-binding protein. Biosci. Biotechnol. Biochem. 62: 1476-1482. PubMed ID: 9757551.

Okada, G., Seifert, K. A., Takematsu, A., Yamaoka, Y., Miyazaki, S., and Tubaki, K. 1998. A molecular phylogenetic reappraisal of the Graphium complex based on 18S rDNA sequences. Can. J. Bot. 76: 1495-1506.

Goris, J., Suzuki, K., De Vos, P., Nakase, T., and Kersters, K. 1998. Evaluation of a microplate DNA-DNA hybridization method compared with the initial renaturation method. Can. J. Microbiol. 44: 1148-1153.

Aminov, R. I., Tajima, K., Ogata, K., Nagamine, T., Sugiura, M., and Benno, Y. 1998. Transcriptional regulation of the Prevotella ruminicola recA gene. Curr. Microbiol. 36: 259-265. PubMed ID: 9541560.

Cai, Y., Benno, Y., Ogawa., M., Ohmomo, S., Kumai, S., and Nakase, T. 1998. Influence of Lactobacillus spp. from an inoculant and of Weissella and Leuconostoc spp. from forage crops on silage fermentation. Environ. Appl. Microbiol. 64: 2982-2987. PubMed ID: 9687461.

Tsuruta, S., Takaya, N., Zhang, L., Shoun, H., Kimura, K., Hamamoto, M., and Nakase, T. 1998. Denitrification by yeasts and occurrence of cytochrome P450nor in Trichosporon cutaneum. FEMS Microbiol. Lett. 168: 105-110. PubMed ID: 9812370.

Cai, Y. and Ogawa, M. 1998. Effect of ammonium tetraformate on the aerobic deterioration of corn silage. Grassland Sci. 44: 90-92.

Hamamoto, M., Kuroyanagi, T., and Nakase, T. 1998. Fellomyces ogasawarensis sp. nov. and Fellomyces distylii sp. nov., yeasts isolated from a plant in Japan. Int. J. Syst. Bacteriol. 48: 287-293. PubMed ID: 9542099.

Sasaki, J., Chijimatsu, M., and Suzuki, K. 1998. Taxonomic significance of 2,4-diaminobutyric acid isomers in the cell wall peptidoglycan of actinomycetes and reclassification of Clavibacter toxicus as Rathayibacter toxicus comb. nov. Int. J. Syst. Bacteriol. 48: 403-410. PubMed ID: 9731278.

Itoh, T., Suzuki, K., and Nakase, T. 1998. Thermocladium modestius gen. nov., sp. nov., a new genus of rod-shaped, extremely thermophilic crenarchaeote. Int. J. Syst. Bacteriol. 48: 879-887. PubMed ID: 9734041.

Takashima, M. and Nakase, T. 1998. Bullera penniseticola sp. nov. and Kockovaella sacchari sp. nov., two new yeast species isolated from plants in Thailand. Int. J. Syst. Bacteriol. 48: 1025-1030. PubMed ID: 9734059.

Kudo, T., Matsushima, K., Itoh, T., Sasaki, J., and Suzuki, K. 1998. Description of four new species of the genus Kineosporia: Kineosporia succinea sp. nov., Kineosporia rhizophila sp. nov., Kineosporia mikuniensis sp. nov. and Kineosporia rhamnosa sp. nov., isolated from plant samples, and amended description of the genus Kineosporia. Int. J. Syst. Bacteriol. 48: 1245-1255. PubMed ID: 9828426.

Sugita, T. and Nakase, T. 1998. Trichosporon japonicum sp. nov. isolated from the air. Int. J. Syst. Bacteriol. 48: 1425-1429. PubMed ID: 9828446.

Sakamoto, M., Tano, Y., Uchimura, T., and Komagata, K. 1998. Aerobic growth of some lactic acid bacteria enable by the external addition of peroxidase (horseradish) to the culture medium. J. Ferment. Bioeng. 85: 627-629.

Kawasaki, S., Nakagawa, T., Nishiyama, Y., Benno, Y., Uchimura, T., Komagata, K., Kozaki, M., and Niimura, Y. 1998. Effect of oxygen on the growth of Clostridium butyricum (type species of the genus Clostridium), and the distribution of enzymes for oxygen and for active oxygen species in clostridia. J. Ferment. Bioeng. 86: 368-372.

Cañete-Gibas, C. F., Takashima, M., Sugita, T., and Nakase, T. 1998. Three new species of Kockovaella isolated from plants collected in the Ogasawara Islands. J. Gen. Appl. Microbiol. 44: 11-18. PubMed ID: 12501288.

Cai, Y., Benno, Y., Takeda, A., Yoshida, T., Itaya, T., and Nakase, T. 1998. Characterization of Leuconostoc species isolated from vacuum-packaged ham. J. Gen. Appl. Microbiol. 44: 153-159. PubMed ID: 12501283.

Cai, Y., Benno, Y., Nakase, T., and Oh, T. K. 1998. Specific probiotic characterization of Weissella hellenica DS-12 isolated from flounder intestine. J. Gen. Appl. Microbiol. 44: 311-316. PubMed ID: 12501410.

Suzuki, M. and Nakase, T. 1998. Cellular neutral sugar compositions and ubiquinone systems of the genus Candida. Microbiol. Cult. Collect. 14: 49-62.

Yabuuchi, E., Kawamura, Y., Kosako, Y., and Ezaki, T. 1998. Emendation of genus Achromobacter and Achromobacter xylosoxidans (Yabuuchi and Yano) and proposal of Achromobacter ruhlandii (Packer and Vishniac) comb. nov., Achromobacter piechaudii (Kiredjian et al.) comb. nov., and Achromobacter xylosoxidans subsp. denitrificans (Rüger and Tan) comb. nov. Microbiol. Immunol. 42: 429-438. PubMed ID: 9688077.

Hamana, K., Niitsu, M., Samejima, K., Itoh, T., Hamana, H., and Shinozawa, T. 1998. Polyamines of the thermophilic eubacteria belonging to the genera Thermotoga, Thermodesulfovibrio, Thermoleophilum, Thermus, Rhodothermus and Meiothermus, and the thermophilic archaebacteria belonging to the genera Aeropyrum, Picrophilus, Methanobacterium and Methanococcus. Microbios 94: 7-21.

Sugita, T. and Nakase, T. 1998. Molecular phylogenetic study of the basidiomycetous anamorphic yeast genus Trichosporon and related taxa based on small subunit ribosomal DNA sequences. Mycoscience 39: 1-10.

Okada, G., Takematsu, A., Gandjar, I., and Nakase, T. 1998. Morphology and molecular phylogeny of Tretopileus sphaerophorus, a synnematous hyphomycete with basidiomycetous affinities. Mycoscience 39: 21-30.

Nagai, K., Suzuki, K., and Okada, G. 1998. Studies on the distribution of alkalophilic and alkali-tolerant soil fungi II: fungal flora in two limestone caves in Japan. Mycoscience 39: 293-298.

Arie, T., Kobayashi, Y., Okada. G., Kono, Y., and Yamaguchi, I. 1998. Control of soilborne clubroot disease of cruciferous plants by epoxydon from Phoma glomerata. Plant Pathol. 47: 743-748.

Takizawa, S., Kojima, S., Tamura, S., Fujinaga, S., Benno, Y., and Nakase, T. 1998. The composition of the Lactobacillus flora in kefir grains. Syst. Appl. Microbiol. 21: 121-127.

Ogata, K., Aminov, R. I., Nagamine, T., Tajima, K., Nakamura, M., Matsui, H., and Benno, Y. 1998. Genomic plasticity of Prevotella ruminicola strains is caused by variable location of cellulase genes, In: Genetics, Biochemistry and Ecology of Cellulose Degradation, pp. 785-789, Uni Publishers Co., Ltd., Tokyo.

Salminen, S., Deighton, M., Benno, Y., and Gorbach, S. 1998. Lactic acid bacteria in health and disease, In: Salminen, S. and von Wright (eds.), Lactic Acid Bacteria, pp. 211-154, Maecel Dekker, New York.

Roeijmans, H., Prillinger, H., Umile, C., Sugiyama, J., Nakase, T., and Boekhout, T. 1998. Analysis of carbohydrate composition of cell walls and extracellular carbohydrates, In: Kurtzman, C. P. and Fell, J. W. (eds.), The Yeasts, a Taxonomic Study (4th edition), pp. 103-105, Elsevier, Amsterdam.

Nakase, T., Suzuki, M., Phaff, H. J., and Kurtzman, C. P. 1998. Debaryomyces Lodder & Kreger-van Rij nom. cons, In: Kurtzman, C. P. and Fell, J. W. (eds.), The Yeasts, a Taxonomic Study (4th edition), pp. 157-173, Elsevier, Amsterdam.

Sugiyama, J. and Hamamoto, M. 1998. Erythrobasidium Hamamoto, Sugiyama & Komagata, In: Kurtzman, C. P. and Fell, J. W. (eds.), The Yeasts, a Taxonomic Study (4th edition), pp. 654-655, Elsevier, Amsterdam.

Boekhout, T. and Nakase, T. 1998. Bensingtonia Ingold emend. Nakase & Boekhout, In: Kurtzman, C. P. and Fell, J. W. (eds.), The Yeasts, a Taxonomic Study (4th edition), pp. 723-730, Elsevier, Amsterdam.

Boekhout, T. and Nakase, T. 1998. Bullera Derx, In: Kurtzman, C. P. and Fell, J. W. (eds.), The Yeasts, a Taxonomic Study (4th edition), pp. 731-741, Elsevier, Amsterdam.

Nakase, T. and Banno, I. 1998. Kockovaella Nakase, Banno & Y. Yamada, In: Kurtzman, C. P. and Fell, J. W. (eds.), The Yeasts, a Taxonomic Study (4th edition), pp. 777-779, Elsevier, Amsterdam.

Boekhout, T. and Nakase, T. 1998. Sporobolomyces Kluyver & van Niel, In: Kurtzman, C. P. and Fell, J. W. (eds.), The Yeasts, a Taxonomic Study (4th edition), pp. 828-843, Elsevier, Amsterdam.

Benno, Y. 1998. Probiotic lactic acid bacteria for functional food, In: Probiotic Researches on Lactic Acid Bacteria, pp. 14-16, The Korean Society for Applied Microbiology, Seoul.

Benno, Y. 1998. The concept of functional food, In: Proceedings of the 25th International Dairy Congress, pp. 15-16, International Dairy Books, Arhus.

Nagamine, T., Aminov, R. I., Sugiura, K., Ogata, K., Tajima, K., and Benno, Y. 1997. Method for preparation of RNA from Ruminococcus albus. BioTechniques 22: 406-407. PubMed ID: 9067009.

Isogai, E., Isogai, H., Hirose, K., Mimura, H., Kimura, K., Hayashi, S., Hayashi, M., Fujii, N., and Benno, Y. 1997. Platelet responses after stimulation with lipopolysaccharide from Porphyromonas gingivalis. Biosci. Microflora 16: 79-82.

Ogata, K., Aminov, R. I., Nagamine, T., Sugiura, M., Tajima, K., Mitumori, M., Sekizaki, T., Minato, H., and Benno, Y. 1997. Construction of a Fibrobacter succinogenes genomic map and demonstration of diversity at the genomic level. Curr. Microbiol. 35: 22-27. PubMed ID: 9175555.

Golubev, W. and Nakase, T. 1997. Mycocinogeny in the genus Bullera: taxonomic specificity of sensitivity to the mycocin produced by Bullera sinensis. FEMS Microbiol. Lett. 146: 59-64. PubMed ID: 8997707.

Kataoka, M., Ueda, K., Kudo, T., Seki, T., and Yoshida, T. 1997. Application of the variable region in 16S rDNA to create an index for rapid species identification in the genus Streptomyces. FEMS Microbiol. Lett. 151: 249-255. PubMed ID: 9244758.

Takashima, M. and Nakase, T. 1997. A phylogenetic analysis of three group I introns found in the nuclear small subunit ribosomal RNA gene of the ballistoconidiogenous anamorphic yeast-like fungus Tilletiopsis flava. Genes Genet. Syst. 72: 205-214. PubMed ID: 9418260.

Suzuki, K., Sasaki, J., Uramoto, M., Nakase, T., and Komagata, K. 1997. Cryobacterium psychrophilum gen. nov., sp. nov., nom. rev., comb. nov., an obligately psychrophilic actinomycete to accommodate "Curtobacterium psychrophilum" Inoue and Komagata 1976. Int. J. Syst. Bacteriol. 47: 474-478. PubMed ID: 9103638.

Yanagida, F., Suzuki, K., Kozaki, M., and Komagata, K. 1997. Proposal of Sporolactobacillus nakayamae subsp. nakayamae sp. nov., subsp. nov., Sporolactobacillus nakayamae subsp. racemicus subsp. nov., Sporolactobacillus terrae sp. nov., Sporolactobacillus kofuensis sp. nov., and Sporolactobacillus lactosus sp. nov. Int. J. Syst. Bacteriol. 47: 499-504.

Kakeya, H., Zhang, H., Kobinata, K., Onose, R., Onozawa, C., Kudo, T., and Osada, H. 1997. Cytotrienin A, a novel apoptosis inducer in human leikemia HL-60 cells. J. Antibiot. 50: 370-372. PubMed ID: 9186568.

Sugawara, T., Tanaka, A., Nagai, K., Suzuki, K., and Okada, G. 1997. New members of the trichothecene family. J. Antibiot. 50: 778-780. PubMed ID: 9360625.

Cai, Y., Ohmomo, S., Ogawa, M., and Kumai, S. 1997. Effect of NaCl-tolerant lactic acid bacteria and NaCl on the fermentation characteristics and aerobic stability of silage. J. Appl. Microbiol. 83: 307-313. PubMed ID: 9351210.

Sugita, T., Takashima, M., Hamamoto, M., Budhaka, P., and Nakase, T. 1997. Bensingtonia sakaguchii sp. nov. isolated from a leaf of Bischofia javanica in the Ogasawara Islands. J. Gen. Appl. Microbiol. 43: 231-235. PubMed ID: 12501324.

Byun, J. W., Park, S. C., Benno, Y., and Oh, T. K. 1997. Probiotic effect of Lactobacillus sp. DS-12 in flounder (Paralichthys olivaceus). J. Gen. Appl. Microbiol. 43: 305-308. PubMed ID: 12501318.

Mikata, K. and Nakase, T. 1997. Surface structure of ascospores of genus Nadsonia Sydow. Microbiol. Cult. Collect. 13: 97-102.

Imai, T., Yazawa, K., Tanaka, Y., Mikami, Y., Kudo, T., Suzuki., K., Ando., A., Nagata, Y., and Graefe, U. 1997. Productivity of antimicrobial substances in pathogenic actinomycetes Nocardia brasiliensis. Microbiol. Cult. Collect. 13: 103-108.

Nakase, T. and Suzuki, M. 1997. Candida gotoi, new species of anamorphic yeast isolated from insect frass in bark of Japanese maple. Microbiol. Cult. Collect. 13: 109-112.

Golubev, W. I., Ikeda, R., Shinoda, T., and Nakase, T. 1997. Antifungal activity of Bullera alba (Hanna) Derx. Mycoscience 38: 25-29.

Okada, G., Takematsu, A., and Takamura, Y. 1997. Phylogenetic relationships of the hyphomycete genera Chaetopsina and Kionochaeta based on 18S rDNA sequences. Mycoscience 38: 409-420.

Pulici, M., Sugawara, F., Koshino, H., Okada, G., Esumi, Y., Uzawa, J., and Yoshida, S. 1997. Metabolites of Pestalotiopsis spp., endophytic fungi of Taxus brevifolia. Phytochemistry 46: 313-319.

Hasegawa, H., Sung, J.-H., and Benno, Y. 1997. Role of human intestinal Prevotella oris in hydrolyzing Ginseng saponins. Planta Med. 63: 436-440. PubMed ID: 9342949.

Benno, Y. 1997. Changes in intestinal flora, In: Mitsuoka, T. (ed.), Intestinal Flora and Immunity, pp. 23-34, Yakult Co. Ltd., Tokyo.

Nagamine, T., Aminov, R. I., Ogata, K., Sugiura, M., Tajima, K., and Benno, Y. 1997. Cloning of xylanase genes from Ruminococcus albus and chromosome mapping of Fibrobacter succinogenes, In: Onodera, R., Itabashi, H., Ushida, K., Yano, H., and Sasaki, Y. (eds.), Rumen Microbes and Digestive Physiology in Ruminants, pp. 59-67, Japan Scientific Societies Press, Tokyo.

Nagamine, T., Ogata, K., Tajima, K., Sugiura, M., and Benno, Y. 1997. Nucleotide sequence of a xylanase gene of Fibrobacter succinogenes S85, In: Present and Future of Rumen Research: Proceeding of Joint Rumen Symposium '97, p. 36, Japanese Society of Rumen Metabolisms and Physiology, Tokyo.

Ogata, K., Tajima, K., Aminov, R. I., Nagamine, T., Sugiura, M., and Benno, Y. 1997. Phenotypic, genotypic and genomic diversity of Prevotella ruminicola isolates, In: Present and Future of Rumen Research: Proceeding of Joint Rumen Symposium '97, p. 39, Japanese Society of Rumen Metabolisms and Physiology, Tokyo.

Sugiyama, J., Inamura, T., Okada, G., Sjamsuridzal, W., Kawasaki, H., and Hirata, A. 1997. Divergence and molecular evolution among basidiomycetous yeasts in the tropical and subtropical genus Graphiola, In: Martins, M. T., Sato, M. I. Z., Tiedje, J. M., Hagler, L. C. N., Doebereiner, J., and Sanchez, P. S. (eds.), Progress in Microbial Ecology: Proceedings of 7th International Symposium on Microbial Ecology, pp. 173-180, Brazilian Society for Microbiology, Sao Paulo.

Hamamoto, M. and Nakase, T. 1996. Ballistosporous yeasts found on the surface of plant materials collected in New Zealand. The genera Bensingtonia and Bullera with descriptions of five new species. Antonie van Leeuwenhoek 69: 279-291. PubMed ID: 8740911.

Wang, J. Y., Suzuki, K., Miyazawa, T., Ueki, T., and Kouyama, T. 1996. Fluorescence polarization study on the dynamics and location of peroxidized fluorescent phospholipids in liposomes. Arch. Biochem. Biophys. 330: 387-394. PubMed ID: 8660669.

Yamada, R., Ujiie, H., Kera, Y., Nakase, T., Kitagawa, K., Imamura, T., Arimoto, K., Takahashi, M., and Matsumura, Y. 1996. Purification and properties of D-aspartate oxidase from Cryptococcus humicolus UJ1. Biochim. Biophys. Acta 1294: 153-158. PubMed ID: 8645733.

Fujita, T., Okamoto, M., Kosako, Y., and Okuhara, M. 1996. Flexibacter japonensis sp. nov., a new species that produces a novel inhibitor of human leukocyte elastase isolated from soil. Curr. Microbiol. 33: 89-93. PubMed ID: 8662178.

Kosako, Y., Tamura, K., Sakazaki, R., and Miki, K. 1996. Enterobacter kobei sp. nov., a new species of the family Enterobacteriaceae resembling Enterobacter cloacae. Curr. Microbiol. 33: 261-265. PubMed ID: 8824173.

Aminov, R. I., Nagamine, T., Ogata, K., Sugiura, M., Tajima, K., and Benno, Y. 1996. Cloning, sequencing and complementation analysis of the recA gene from Prevotella ruminicola. FEMS Microbiol. Lett. 144: 53-59. PubMed ID: 8870252.

Suzuki, K., Sasaki, J., Uramoto, M., Nakase, T., and Komagata, K. 1996. Agromyces mediolanus sp. nov., nom. rev., comb. nov., a species for "Corynebacterium mediolanum" Mamoli 1939 and for some aniline-assimilating bacteria which contain 2,4-diaminobutyric acid in the cell wall peptidoglycan. Int. J. Syst. Bacteriol. 46: 88-93. PubMed ID: 8573525.

Cui, C.-B., Kakeya, H., Okada, G., Onose, R., and Osada, H. 1996. Novel mammalian cell cycle inhibitors, tryprostatins A, B and other diketopiperazines produced by Aspergillus fumigatus. I. Taxonomy, fermentation, isolation and biological properties. J. Antibiot. 49: 527-533. PubMed ID: 8698634.

Ubukata, M., Morita, T., Kakeya, H., Kobinata, K., Kudo, T., and Osada, H. 1996. Sparoxomycins A1 and A2, new inducers of the flat reversion of NRK cells transformed by temperature sensitive Rous sarcoma virus. I. Taxonomy of the producing organism, fermentation and biological activity. J. Antibiot. 49: 1096-1110. PubMed ID: 8982337.

Cui, C.-B., Ubukata, M., Kakeya, H., Onose, R., Okada, G., Takahashi, I., Isono, K., and Osada, H. 1996. Acetophthalidin, a novel inhibitor of mammalian cell cycle, produced by a fungus isolated from a sea sediment. J. Antibiotics 49: 216-219. PubMed ID: 8621365.

Suh, S.-O., Takashima, M., and Nakase, T. 1996. Phylogenetic study of the basidiomycetous anamorphic yeasts Rhodotorula lactosa and R. minuta, and related taxa based on 18S rDNA sequence. J. Gen. Appl. Microbiol. 42: 1-6.

Nakase, T., Suzuki, M., Hamamoto, M., Takashima, M., Hatano, T., and Fukui, S. 1996. A taxonomic study on cellulolytic yeasts and yeast-like microorganisms isolated from Japan. II. The genus Cryptococcus. J. Gen. Appl. Microbiol. 42: 7-15.

Takashima, M., Suh, S.-O., and Nakase, T. 1996. Group I introns found in nuclear small subunit ribosomal RNA genes of the ballistoconidiogenous anamorphic yeast Bensingtonia ciliata and Bensingtonia yamatoana. J. Gen. Appl. Microbiol. 42: 189-200.

Takashima, M. and Nakase, T. 1996. A phylogenetic study of the genus Tilletiopsis, Tilletiaria anomala and related taxa based on the small subunit ribosomal DNA sequences. J. Gen. Appl. Microbiol. 42: 421-429.

Golubev, W., Ikeda, R., Shinoda, T., and Nakase, T. 1996. Mycocinogeny in the genus Bullera: anti-tremellaceous yeast activity of killer toxin produced by Bullera hannae. J. Gen. Appl. Microbiol. 42: 471-479.

Suh, S.-O., Takashima, M., Hamamoto, M., and Nakase, T. 1996. Molecular phylogeny of the ballistoconidium-forming anamorphic yeast genus Bullera and related taxa based on small subunit ribosomal DNA sequences. J. Gen. Appl. Microbiol. 42: 501-509.

Hashimoto, S., Igimi, H., Uchida, K., Satoh, T., Benno, Y., and Takeuchi, N. 1996. Effects of β-lactam antibiotics on intestinal microflora and bile acid metabolism in rats. Lipids 31: 601-609. PubMed ID: 8784740.

Tanaka, Y., Yazawa, K., Mikami, Y., Kudo, T., Suzuki, K., Komaki, H., Tojo, T., and Kadowaki, K. 1996. Changes in menaquinone composition associated with growth phase and medium composition in Amycolatopsis species. Microbiol. Cult. Collect. 12: 11-16.

Okada, G. 1996. Conidiogenesis of a didymosporous synnematous hyphomycete, Stachycoremium parvulum. Microbiol. Cult. Collect. 12: 17-24.

Suh, S.-O., Takematsu, A., Takashima, M., and Nakase, T. 1996. Molecular phylogenetic study on stalked conidium-forming yeasts and related basidiomycetous yeast taxa based on 18S rDNA sequences. Microbiol. Cult. Collect. 12: 79-86.

Hamana, K., Hamana, H., Niitsu, M., Samejima, K., and Itoh, T. 1996. Distribution of long linear and branched polyamines in thermophilic eubacteria and hyper thermophilic archaebacteria. Microbios 85: 19-33.

Hamana, K., Hamana, H., Niitsu, M., Samejima, K., and Itoh, T. 1996. Polyamines of hyperthermophilic archaebacteria, Archaeoglobus, Thermococcus, Pyrobaculum and Sulfolobus. Microbios 87: 69-76.

Benno, Y., He, F., Hosoda, M., Hashimoto, H., Kojima, T., Yamazaki, K., Iino, H., Mykkanen, H., and Salminen, S. 1996. Effects of Lactobacillus GG yogurt on human intestinal microecology in Japanese subjects. Nutr. Today 31: 9S-11S.

Koseki, T., Ishikawa, I., Boutsi, E., He, T., and Benno, Y. 1996. Nutritional analysis and an enriched medium for fermentative treponemes isolated from subgingival plaque. Oral Microbiol. Immunol. 11: 166-171. PubMed ID: 8941771.

Koseki, T., Benno, Y., Zhang-Koseki, Y. J., Umeda, M., and Ishikawa, I. 1996. Detection frequencies and the colony-forming unit recovery of oral treponemes by different cultivation methods. Oral Microbiol. Immunol. 11: 203-208. PubMed ID: 8941777.

Ogata, K., Aminov, R. I., Nagamine, T., Benno, Y., Sekizaki, T., Mitsumori, M., Minato, H., and Itabashi, H. 1996. Structural organization of pRAM4, a cryptic plasmid from Prevotella ruminicola. Plasmid 35: 91-97. PubMed ID: 8700970.

Prillinger, H., Messner, R., König, H., Bauer, R., Lopandic, K., Molnar, O., Dangel, P., Weigang, F., Kirisits, T., Nakase, T., and Sigler, L. 1996. Yeasts associated with termites: a phenotypic and genotypic characterization and use of coevolution for dating evolutionary radiations in asco- and basidiomycetes. Syst. Appl. Microbiol. 19: 265-283.

Benno, Y. 1996. A semi-automatic system for bacterial identification. RIKEN Rev. 12: 57-58.

Benno, Y., Inoue, H., Tajima, K., Nagamine, T., Ogata, K., Sugiura, M., and Aminov, R. I. 1996. Isolation and identification of rumen anaerobic bacteria, In: The 8th Animal Science Congress of the Asian-Australasian Association of Animal Production Societies: Proceedings Vol. 2, pp. 654-655, Japanese Society of Zootechnical Science, Tokyo.

Tajima, K., Aminov, R. I., Nagamine, T., Ogata, K., Sugiura, M., and Benno, Y. 1996. Genetic diversity of rumen bacteria based on direct retrieval and analysis of 16S rDNA sequences, In: The 8th Animal Science Congress of the Asian-Australasian Association of Animal Production Societies: Proceedings Vol. 2, pp. 656-657, Japanese Society of Zootechnical Science, Tokyo.

Nagamine, T., Takenaka, A., Aminov, R. I., Ogata, K., Sugiura, M., Tajima, K., Benno, Y., and Itabashi, H. 1996. Cloning, molecular analysis and expression of xylanase gene from Ruminococcus albus 7, In: The 8th Animal Science Congress of the Asian-Australasian Association of Animal Production Societies: Proceedings Vol. 2, pp. 660-661, Japanese Society of Zootechnical Science, Tokyo.

Ogata, K., Aminov, R. I., Nagamine, T., Sugiura, M., Tajima, K., Mitsumori, M., Sekizaki, T., Minato, H., and Benno, Y. 1996. Construction of AscI restriction map of Fibrobacter succinogenes S85 by pulse-field gel electrophoresis, In: The 8th Animal Science Congress of the Asian-Australasian Association of Animal Production Societies: Proceedings Vol. 2, pp. 664-665, Japanese Society of Zootechnical Science, Tokyo.

Cai, Y., Ogawa, M., Benno, Y., and Nakase, T. 1996. Effect of physical properties of yeasts on the aerobic deterioration in dairy farm silage, In: The 8th Animal Science Congress of the Asian-Australasian Association of Animal Production Societies: Proceedings Vol. 2, pp. 891-892, Japanese Society of Zootechnical Science, Tokyo.

Itoh, T., Kudo, T., Oyaizu, H., and Seino, A. 1995. Two new species in the genus Actinomadura; A. glomerata sp. nov., and A. longicatena sp. nov. Actinomycetologica 9: 164-177.

Hamamoto, M. and Nakase, T. 1995. Ballistosporous yeasts found on the surface of plant materials collected in New Zealand. I. Six new species in the genus Sporobolomyces. Antonie van Leeuwenhoek 67: 151-171. PubMed ID: 7771763.

Sakurai, I., Kosako, Y., Kawamura, Y., Ueki, T., Inoue, Y., and Nakase, T. 1995. Bacterially associated corrosion of aluminum surface in the air. Biotechnol. Lett. 17: 1131-1132.

Hiraishi, A., Kishimoto, N., Kosako, Y., Wakao, N., and Tano, T. 1995. Phylogenetic position of the menaquinone-containing acidophilic chemo-organotroph Acidobacterium capsulatum. FEMS Microbiol. Lett. 132: 91-94. PubMed ID: 7590170.

Urakami, T., Sasaki, J., Suzuki, K., and Komagata, K. 1995. Characterization and description of Hyphomicrobium denitrificans sp. nov. Int. J. Syst. Bacteriol. 45: 528-532.

Kakeya, H., Takahashi, I., Okada, G., Isono, K., and Osada, H. 1995. Epolactaene, a novel neuritogenic compound in human neuroblastoma cells, produced by a marine fungus. J. Antibiotics 48: 733-735. PubMed ID: 7649877.

Cui, C.-B., Kakeya, H., Okada, G., Onose, R., Ubukata, M., Takahashi, I., Isono, K., and Osada, H. 1995. Tryprostatins A and B, novel mammalian cell cycle inhibitors produced by Aspergillus fumigatus. J. Antibiotics 48: 1382-1384. PubMed ID: 8557590.

Naito, S., Hayashidani, H., Kaneko, K., Ogawa, M., and Benno, Y. 1995. Development of intestinal lactobacilli in normal piglets. J. Appl. Bacteriol. 79: 230-236. PubMed ID: 7592119.

Takashima, M., Suh, S.-O., and Nakase, T. 1995. Phylogenetic relationships among species of the genus Bensingtonia and related taxa based on the small subunit ribosomal DNA sequences. J. Gen. Appl. Microbiol. 41: 131-141.

Takashima, M., Suh, S.-O., and Nakase, T. 1995. Bensingtonia musae sp. nov. isolated from a dead leaf of Musa paradisiaca and its phylogenetic relationship among basidiomycetous yeasts. J. Gen. Appl. Microbiol. 41: 143-151.

Hamana, K., Hamana, H., and Itoh, T. 1995. Ubiquitous occurrence of agmatine as the major polyamine within extremely halophilic archaebacteria. J. Gen. Appl. Microbiol. 41: 153-158.

Suh, S.-O. and Nakase, T. 1995. Phylogenetic analysis of the ballistosporous anamorphic genera Udeniomyces and Bullera, and related basidiomycetous yeasts based on 18S rDNA sequences. Microbiology 141: 901-906. PubMed ID: 7773393.

Hamana, K., Hamana, H., and Itoh, T. 1995. Polyamines in the hydrogen-oxidizing eubacteria, Hydrogenobacter, Calderobacterium and Hydrogenovibrio and the sulphur-reducing archaebacteria Stygiolobus and Desulfurolobus. Microbios 81: 223-229.

Okada, G., Sakai, N., and Yamagishi, M. 1995. Acremonium-like submerged conidiation in Paecilomyces nostocoides and P. lilacinus. Microbios 81: 345-351.

Nagai, K., Sakai, T., Rantiatmodjo, R. M., Suzuki, K., Gams, W., and Okada, G. 1995. Studies on the distribution of alkalophilic and alkali-tolerant soil fungi I. Mycoscience 36: 247-256.

Koseki, T., Ishikawa, I., Umeda, M., and Benno, Y. 1995. Characterization of oral treponemes isolated from human periodontal pockets. Oral Microbiol. Immunol. 10: 271-277. PubMed ID: 8596668.

Kishimoto, N., Kosako, Y., Wakao, N., Tano, T., and Hiraishi, A. 1995. Transfer of Acidiphilium facilis and Acidiphilium aminolytica to the genus Acidocella gen. nov., and emendation of the genus Acidiphilium. Syst. Appl. Microbiol. 18: 85-91.

Kudo, T. 1995. Establishment of the genus Herbidospora and some new taxa of actinomycetes. Actinomycetologica 9: 66-74.

Nakase, T., Suh, S.-O., and Takashima, M. 1995. Significance of cellular xylose in the systematics of basidiomycetous yeasts. RIKEN Rev. 8: 47-48.

Benno, Y. 1995. Oligosaccharides and human fecal bifidobacteria. RIKEN Rev. 8: 57-58.

Nakase, T., Suh, S.-O., and Hamamoto, M. 1995. Molecular systematics of ballistoconidium-forming yeasts, In: Boekhout, T. and Samson, R. A. (eds.), Studies in Mycology No. 38, pp. 163-173, Centraalbureau voor Schimmelcultures, Baarn and Delft.

Ochi, K., Inatsu, Y., Okamoto, S., Penyige, A., Kudo, T., and Hotta, K. 1994. Characterization of various Streptomyces griseus strains as to aerial mycelium- and submerged spore-formation. Actinomycetologica 8: 79-84.

Hara-Kudo, Y., Benno, Y., Hayashidani, H., Kaneko, K. I., and Ogawa, M. 1994. Improved media for isolation of fecal bacteria in koalas. Bifidobacteria Microflora 13: 9-16.

Ishii, M., Ono, T., Suzuki, K., Igarashi, Y., and Kodama, T. 1994. Electron transport system in Pseudomonas hydrogenothermophila strain TH-1, a thermophilic hydrogen-oxidizing bacterium. Biosci. Biotechnol. Biochem. 58: 1-4.

Shimada, T., Arakawa, E., Itoh, K., Kosako, Y., Inoue, K., Zhengshi, Y., and Aldova, E. 1994. New O and H antigens of Plesiomonas shigelloides and their O antigenic relationships to Shigella boydii. Curr. Microbiol. 28: 351-354.

Urakami, T., Ito-Yoshida, C., Araki, H., Kojima, T., Suzuki, K., and Komagata, K. 1994. Transfer of Pseudomonas plantarii and Pseudomonas glumae to Burkholderia as Burkholderia spp. and description of Burkholderia vandii sp. nov. Int. J. Syst. Bacteriol. 44: 235-245.

Takizawa, S., Kojima, S., Tamura, S., Fujinaga, S., Benno, Y., and Nakase, T. 1994. Lactobacillus kefirgranum sp. nov. and Lactobacillus parakefir sp. nov., two new species from kefir grains. Int. J. Syst. Bacteriol. 44: 435-439.

Nakase, T., Takashima, M., and Hamamoto, M. 1994. Sporobolomyces linderae, a new ballistosporous anamorphic yeast found on a dead leaf of Lindera obtusiloba collected at Mt. Fuji. J. Gen. Appl. Microbiol. 40: 95-101.

Suzuki, M., Nakase, T., and Komagata, K. 1994. Candida stellimalicola, a new species of anamorphic yeast isolated from star apple in Thailand. J. Gen. Appl. Microbiol. 40: 115-121.

Nakase, T., Suzuki, M., Takashima, M., Miyakawa, Y., Kagaya, K., Fukazawa, Y., and Komagata, K. 1994. Candida sojae, a new species of yeast isolated from an extraction process of water-soluble substances of defatted soybean flakes. J. Gen. Appl. Microbiol. 40: 161-169.

van der Walt, J. P., Nakase, T., Suzuki, M., Takashima, M., and Yamada, Y. 1994. Debaryomyces polymorphus var. africanus, a new variety of ascosporogenous yeast found in South Africa. J. Gen. Appl. Microbiol. 40: 331-337.

Nakase, T., Suzuki, M., Takashima, M., Hamamoto, M., Hatano, T., and Fukui, S. 1994. A taxonomic study on cellulolytic yeasts and yeast-like microorganisms isolated in Japan. I. Ascomycetous yeast genera Candida and Williopsis, and a yeast-like genus Prototheca. J. Gen. Appl. Microbiol. 40: 519-531.

Nakase, T., Suzuki, M., Takashima, M., Rosadi, D., Hermosillo, A. M., and Komagata, K. 1994. Candida akabanensis, a new species of yeast isolated from insect frass in bark of a grape-vine. Microbiol. Cult. Collect. 10: 35-43.

Lee, W.-K., Benno, Y., Fujisawa, T., Itoh, K., and Mitsuoka, T. 1994. Isolation and characterization of fecal clostridia from humans and animals. Microbiol. Cult. Collect. 10: 89-96.

Takashima, M., Suzuki, M., and Nakase, T. 1994. Isolation of pyridoxine-requiring strains of Candida intermedia from insect frass of a fig-tree. Microbiol. Cult. Collect. 10: 97-101.

Nakase, T., Takematsu, A., Hamamoto, M., and Takashima, M. 1993. The expanding realm of ballistosporous yeasts. Antonie van Leeuwenhoek 63: 191-200. PubMed ID: 8259835.

Park, Y.-H., Suzuki, K., Yim, D.-G., Lee, K.-C., Kim, E., Yoon, J., Kim, S., Kho, Y. H., Goodfellow, M., and Komagata, K. 1993. Supra-generic classification of peptidoglycan group B actinomycetes by nucleotide sequencing of 5S ribosomal RNA. Antonie van Leeuwenhoek 64: 307-313.

Taguchi, S., Kikuchi, H., Kojima, S., Kumagai, I., Nakase, T., Miura, K., and Momose, H. 1993. High frequency of SSI-like protease inhibitors among Streptomyces. Biosci. Biotechnol. Biochem. 57: 522-524. PubMed ID: 7763545.

Kojima, S., Takizawa, S., Tamura, S., Fujinaga, S., Benno, Y., and Nakase, T. 1993. An improved medium for the isolation of lactobacilli from kefir grains. Biosci. Biotechnol. Biochem. 57: 119-120.

Suzuki, M. and Nakase, T. 1993. A taxonomic study on Candida glaebosa and phenotypically related species Candida saitoana, with a description of a new species Candida pseudoglaebosa. Bull. JFCC 9: 120-134.

Kishimoto, N., Kosako, Y., and Tano, T. 1993. Acidiphilium aminolytica sp. nov.: an acidophilic chemoorganotrophic bacterium isolated form acidic mineral environment. Curr. Microbiol. 27: 131-136.

Kudo, T., Itoh, T., Miyadoh, S., Shomura, T., and Seino, A. 1993. Herbidospora gen. nov., a new genus of the family Streptosporangiaceae Goodfellow et al. 1990. Int. J. Syst. Bacteriol. 43: 319-328. PubMed ID: 7684242.

Urakami, T., Araki, H., Suzuki, K., and Komagata, K. 1993. Further studies of the genus Methylobacterium and description of Methylobacterium aminovorans sp. nov. Int. J. Syst. Bacteriol. 43: 504-513.

Shima, S. and Suzuki, K. 1993. Hydrogenobacter acidophilus, sp. nov., a thermoacidophilic, aerobic, hydrogen-oxidizing bacterium requiring elemental sulfur for growth. Int. J. Syst. Bacteriol. 43: 703-708.

Ubukata, M., Osada, H., Kudo, T., and Isono, K. 1993. Respinomycins A1, A2, B, C and D, a novel group of anthracycline antibiotics. I. Taxonomy, fermentation, isolation and biological activities. J. Antibiot. 46: 936-941. PubMed ID: 8344875.

Kobinata, K., Koshino, H., Kudo, T., Isono, K., and Osada, H. 1993. RK-397, a new oxo pentaene antibiotic. J. Antibiot. 46: 1616-1618. PubMed ID: 8244892.

Nakase, T., Takematsu, A., and Yamada, Y. 1993. Molecular approaches to the taxonomy of ballistosporous yeasts based on the partial nucleotide sequences of 18S ribosomal ribonucleic acid. J. Gen. Appl. Microbiol. 39: 107-134.

Masuda, S., Seki, K., Sumi, T., Kobayashi, K., Sakurada, J., Murai, M., Usui, A., Jitsukawa, H., Ishii, M., Yoshiba, S., and Kosako, Y. 1993. Isolation procedure and preliminary characterization of toxin-producing bacteria form Japanese land leech, Haemadipsa zeylanica japonica and medical leech, Hirudo medicinalis. Jpn. J. Sanit. Zool. 44: 279-285.

Ohama, T., Suzuki, T., Mori, M., Osawa, S., Ueda, T., Watanabe, K., and Nakase, T. 1993. Non-universal decoding of the leucine codon CUG in several Candida species. Nucleic Acids Res. 21: 4039-4045. PubMed ID: 8371978.

Okada, G., Niimura, Y., Sakata, T., Uchimura, T., Ohara, N., Suzuki, H., and Kozaki, M. 1993. Acremonium alcalophilum, a new alkalophilic cellulolytic hyphomycete. Trans. Mycol. Soc. Japan 34: 171-185.

Kosako, Y. and Kishimoto, N. 1993. Acidobacterium capsulatum; a new genus and species isolated form acidic environment. RIKEN Rev. 3: 5-6.

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Benno, Y. and Koseki, T. 1993. Treponemes in human periodontal disease. RIKEN Rev. 3: 25-26.

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